Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB1	5243	genome.wustl.edu	37	7	87175263	87175263	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	87175263	87175263	G	A	SNP	ABCB1	NM_000927	human	genbank	57_37b	-1	reviewed	silent	c.1803	p.F601	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ADCYAP1	116	genome.wustl.edu	37	18	907675	907675	+	Silent	SNP	G	G	A	rs8192597	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	907675	907675	G	A	SNP	ADCYAP1	NM_001099733	human	genbank	57_37b	+1	reviewed	silent	c.126	p.A42	0.141	NULL	HMMSmart_GLUCA,HMMPfam_Hormone_2,PatternScan_GLUCAGON	-		
AEBP1	165	genome.wustl.edu	37	7	44150707	44150707	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44150707	44150707	T	G	SNP	AEBP1	ENST00000450684	human	ensembl	57_37b	+1	known	missense	c.310	p.W104G	0.000	NULL	HMMPfam_F5_F8_type_C,superfamily_Gal_bind_like,PatternScan_FA58C_2,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_CarboxypepD_reg	-	no_errors	
ANKRD11	29123	genome.wustl.edu	37	16	89347633	89347633	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89347633	89347633	C	A	SNP	ANKRD11	NM_013275	human	genbank	57_37b	-1	validated	nonsense	c.5317	p.E1773*	0.999	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
ANKRD32	84250	genome.wustl.edu	37	5	94014648	94014648	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	94014648	94014648	C	G	SNP	ANKRD32	NM_032290	human	genbank	57_37b	+1	validated	missense	c.1963	p.L655V	0.994	NULL	HMMSmart_BRCT,superfamily_BRCT,HMMPfam_BRCT,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
ATP1A1	476	genome.wustl.edu	37	1	116936238	116936238	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	116936238	116936238	G	A	SNP	ATP1A1	NM_000701	human	genbank	57_37b	+1	reviewed	missense	c.1553	p.C518Y	1.000	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
C14orf43	91748	genome.wustl.edu	37	14	74205696	74205696	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74205696	74205696	T	-	DEL	C14orf43	NM_001043318	human	genbank	57_37b	-1	validated	frame_shift_del	c.1016	p.Q339fs	1.000	NULL	HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	(deletion:cds_exon[74205263,74206711])	no_errors	
CACNG2	10369	genome.wustl.edu	37	22	36983554	36983554	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36983554	36983554	C	T	SNP	CACNG2	NM_006078	human	genbank	57_37b	-1	reviewed	missense	c.253	p.E85K	0.451	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors	
CDC42BPA	8476	genome.wustl.edu	37	1	227182616	227182616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	227182616	227182616	G	A	SNP	CDC42BPA	NM_003607	human	genbank	57_37b	-1	reviewed	missense	c.4936	p.R1646W	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,HMMPfam_DMPK_coil,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_CNH,HMMSmart_CNH,HMMSmart_PBD	-	no_errors	
CEACAM18	729767	genome.wustl.edu	37	19	51984819	51984819	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51984819	51984819	C	G	SNP	CEACAM18	NM_001080405	human	genbank	57_37b	+1	provisional	silent	c.756	p.V252	0.002	HMMSmart_SM00409,superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors	
CETP	1071	genome.wustl.edu	37	16	57009014	57009014	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57009014	57009014	C	T	SNP	CETP	NM_000078	human	genbank	57_37b	+1	reviewed	missense	c.932	p.A311V	0.006	HMMPfam_LBP_BPI_CETP_C,superfamily_Bactericidal permeability-increasing protein BPI,HMMSmart_SM00329	superfamily_Bactericidal permeability-increasing protein BPI,PatternScan_LBP_BPI_CETP,HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329	-	no_errors	
COL20A1	57642	genome.wustl.edu	37	20	61959802	61959803	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61959802	61959803	-	T	INS	COL20A1	NM_020882	human	genbank	57_37b	+1	validated	frame_shift_ins	c.3733_3734	p.V1246fs	0.001:0.004	NULL	HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors	
DNAH8	1769	genome.wustl.edu	37	6	38863942	38863942	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	38863942	38863942	G	A	SNP	DNAH8	NM_001371	human	genbank	57_37b	+1	validated	missense	c.8230	p.E2744K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DPP4	1803	genome.wustl.edu	37	2	162875265	162875265	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	162875265	162875265	G	A	SNP	DPP4	NM_001935	human	genbank	57_37b	-1	reviewed	missense	c.1394	p.A465V	0.877	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER	-	no_errors	
ENSA	2029	genome.wustl.edu	37	1	150600017	150600017	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150600017	150600017	G	C	SNP	ENSA	NM_207042	human	genbank	57_37b	-1	reviewed	missense	c.109	p.L37V	1.000	HMMPfam_Endosulfine	HMMPfam_Endosulfine	-	no_errors	
ENSG00000171101	0	genome.wustl.edu	37	19	51671571	51671571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51671571	51671571	C	T	SNP	ENSG00000171101	ENST00000341811	human	ensembl	57_37b	+1	known	missense	c.572	p.T191M	0.000	superfamily_SSF48726	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig	-	no_errors	
ENSG00000187900	0	genome.wustl.edu	37	3	97957599	97957599	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97957599	97957599	T	C	SNP	ENSG00000187900	ENST00000341450	human	ensembl	57_37b	+1	known	missense	c.287	p.I96T	0.883	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
ENSG00000211794	0	genome.wustl.edu	37	14	22434289	22434289	+	Silent	SNP	C	C	T	rs34835133	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	22434289	22434289	C	T	SNP	ENSG00000211794	ENST00000390442	human	ensembl	57_37b	+1	known	silent	c.342	p.S114	0.001	HMMPfam_V-set	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-		
ENSG00000245908	0	genome.wustl.edu	37	9	132502164	132502164	+	RNA	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	132502164	132502164	C	T	SNP	ENSG00000245908	ENST00000501752	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.271	-	-	-	no_errors	
ENSG00000246512	0	genome.wustl.edu	37	18	43480771	43480771	+	RNA	SNP	C	C	A	rs12604880	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43480771	43480771	C	A	SNP	ENSG00000246512	ENST00000499212	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-		
FAM164C	79696	genome.wustl.edu	37	14	75537877	75537877	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75537877	75537877	G	A	SNP	FAM164C	NM_024643	human	genbank	57_37b	+1	validated	missense	c.601	p.A201T	0.000	NULL	NULL	-	no_errors	
FAM96B	51647	genome.wustl.edu	37	16	66967614	66967614	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	66967614	66967614	A	C	SNP	FAM96B	NM_016062	human	genbank	57_37b	-1	validated	missense	c.251	p.V84G	0.987	HMMPfam_DUF59	HMMPfam_DUF59	-	no_errors	
FGG	2266	genome.wustl.edu	37	4	155533328	155533328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	155533328	155533328	C	T	SNP	FGG	NM_021870	human	genbank	57_37b	-1	reviewed	missense	c.149	p.G50D	1.000	HMMPfam_Fib_gamma	HMMPfam_Fib_gamma,superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
FLJ16779	0	genome.wustl.edu	37	20	61888621	61888621	+	RNA	SNP	G	G	A	rs112221121	byCluster;by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61888621	61888621	G	A	SNP	FLJ16779	NR_024389	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.014	-	-	-		
FLJ90680	400926	genome.wustl.edu	37	22	37242489	37242490	+	RNA	DEL	GT	GT	-	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37242489	37242490	GT	-	DEL	FLJ90680	XR_041668	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.001:0.000	-	-	(deletion:rna[37242075,37244244])	no_errors	
G6PD	2539	genome.wustl.edu	37	X	153761880	153761880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153761880	153761880	C	T	SNP	G6PD	NM_000402	human	genbank	57_37b	-1	reviewed	missense	c.865	p.V289M	1.000	superfamily_SSF55347,HMMPfam_G6PD_C	superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C	-	no_errors	
GAB4	128954	genome.wustl.edu	37	22	17451008	17451008	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17451008	17451008	C	A	SNP	GAB4	NM_001037814	human	genbank	57_37b	-1	provisional	missense	c.762	p.Q254H	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
GP5	2814	genome.wustl.edu	37	3	194117824	194117824	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	194117824	194117824	G	A	SNP	GP5	NM_004488	human	genbank	57_37b	-1	validated	silent	c.1188	p.H396	0.588	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT	-	no_errors	
GPRASP2	114928	genome.wustl.edu	37	X	101971946	101971946	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101971946	101971946	G	T	SNP	GPRASP2	NM_001004051	human	genbank	57_37b	+1	validated	missense	c.2149	p.A717S	0.733	HMMPfam_DUF634,superfamily_ARM-type_fold	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors	
GRK1	6011	genome.wustl.edu	37	13	114321757	114321757	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114321757	114321757	G	A	SNP	GRK1	ENST00000335678	human	ensembl	57_37b	+1	known	missense	c.56	p.R19Q	1.000	NULL	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors	
H2AFZ	3015	genome.wustl.edu	37	4	100870877	100870877	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	100870877	100870877	C	G	SNP	H2AFZ	NM_002106	human	genbank	57_37b	-1	reviewed	missense	c.24	p.K8N	1.000	superfamily_Histone-fold,HMMSmart_SM00414	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
HIBCH	26275	genome.wustl.edu	37	2	191069855	191069855	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	191069855	191069855	A	C	SNP	HIBCH	NM_014362	human	genbank	57_37b	-1	validated	missense	c.1149	p.D383E	1.000	NULL	superfamily_ClpP/crotonase,HMMPfam_ECH	-	no_errors	
HNRNPUL1	11100	genome.wustl.edu	37	19	41811615	41811615	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41811615	41811615	G	C	SNP	HNRNPUL1	NM_007040	human	genbank	57_37b	+1	reviewed	missense	c.2297	p.G766A	0.966	NULL	superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_SPRY,HMMSmart_SM00449,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
LMBRD1	55788	genome.wustl.edu	37	6	70428924	70428924	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70428924	70428924	C	T	SNP	LMBRD1	NM_018368	human	genbank	57_37b	-1	reviewed	missense	c.686	p.S229N	0.996	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors	
LOC100129396	0	genome.wustl.edu	37	17	16692262	16692262	+	RNA	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16692262	16692262	C	T	SNP	LOC100129396	NR_026810	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.025	-	-	-	no_errors	
LOC645314	645314	genome.wustl.edu	37	2	194141424	194141424	+	Missense_Mutation	SNP	G	G	C	rs13409950	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	194141424	194141424	G	C	SNP	LOC645314	XM_002342299	human	genbank	57_37b	-1	model	missense	c.510	p.D170E	0.003	NULL	NULL	-		
LOC728743	728743	genome.wustl.edu	37	7	150108704	150108704	+	RNA	SNP	G	G	C	rs34466870	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150108704	150108704	G	C	SNP	LOC728743	NR_027237	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-		
LOC84740	84740	genome.wustl.edu	37	4	7775099	7775099	+	RNA	SNP	C	C	T	rs16841175	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7775099	7775099	C	T	SNP	LOC84740	NR_026892	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.001	-	-	-		
LRP2BP	55805	genome.wustl.edu	37	4	186296782	186296782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186296782	186296782	C	T	SNP	LRP2BP	NM_018409	human	genbank	57_37b	-1	validated	silent	c.315	p.G105	0.997	superfamily_HCP-like,HMMSmart_SM00671	superfamily_HCP-like,HMMPfam_TPR_2,HMMSmart_SM00671,HMMPfam_Sel1	-	no_errors	
MAP2K4	6416	genome.wustl.edu	37	17	11958309	11958310	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11958309	11958310	-	T	INS	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	splice_site_ins	c.218+1_218+1	e2+1	1.000:1.000	-	-	-	no_errors	
MUC4	4585	genome.wustl.edu	37	3	195512343	195512343	+	Silent	SNP	G	G	A	rs113457754	byCluster;by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195512343	195512343	G	A	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	silent	c.6108	p.T2036	0.000	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-		
MXD4	10608	genome.wustl.edu	37	4	2252287	2252287	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2252287	2252287	C	T	SNP	MXD4	NM_006454	human	genbank	57_37b	-1	reviewed	missense	c.614	p.R205H	0.908	NULL	HMMPfam_HLH,superfamily_HLH_basic,HMMSmart_HLH	-	no_errors	
NF1	4763	genome.wustl.edu	37	17	29657384	29657384	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29657384	29657384	G	C	SNP	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	missense	c.5680	p.E1894Q	1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors	
NFASC	23114	genome.wustl.edu	37	1	204938069	204938069	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204938069	204938069	A	G	SNP	NFASC	NM_015090	human	genbank	57_37b	+1	reviewed	missense	c.995	p.K332R	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors	
NIPAL4	348938	genome.wustl.edu	37	5	156899539	156899539	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156899539	156899539	G	A	SNP	NIPAL4	NM_001099287	human	genbank	57_37b	+1	reviewed	silent	c.972	p.P324	0.017	HMMPfam_DUF803	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors	
NLRP1	22861	genome.wustl.edu	37	17	5418124	5418124	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5418124	5418124	C	A	SNP	NLRP1	NM_033004	human	genbank	57_37b	-1	reviewed	nonsense	c.4372	p.E1458*	0.025	superfamily_DEATH domain,HMMPfam_CARD	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1,HMMPfam_CARD	-	no_errors	
PCYOX1	51449	genome.wustl.edu	37	2	70503936	70503936	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	70503936	70503936	C	T	SNP	PCYOX1	NM_016297	human	genbank	57_37b	+1	validated	silent	c.930	p.I310	0.516	superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain,HMMPfam_Prenylcys_lyase	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain,HMMPfam_Prenylcys_lyase	-	no_errors	
PHLDB3	653583	genome.wustl.edu	37	19	44006351	44006351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44006351	44006351	G	A	SNP	PHLDB3	NM_198850	human	genbank	57_37b	-1	validated	missense	c.298	p.R100C	0.993	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
PNMAL2	0	genome.wustl.edu	37	19	46997335	46997335	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46997335	46997335	A	C	SNP	PNMAL2	NM_020709	human	genbank	57_37b	-1	validated	missense	c.1388	p.V463G	0.000	NULL	NULL	-	no_errors	
POLR3F	10621	genome.wustl.edu	37	20	18462391	18462391	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18462391	18462391	C	-	DEL	POLR3F	NM_006466	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.810	p.Y270fs	0.998	HMMPfam_RNA_pol_Rpc34	HMMPfam_RNA_pol_Rpc34	(deletion:cds_exon[18462263,18462454])	no_errors	
PROX1	5629	genome.wustl.edu	37	1	214170689	214170689	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214170689	214170689	G	T	SNP	PROX1	NM_002763	human	genbank	57_37b	+1	provisional	missense	c.811	p.D271Y	1.000	HMMPfam_Prox1	HMMPfam_Prox1,superfamily_Homeodomain_like	-	no_errors	
PTEN	5728	genome.wustl.edu	37	10	89711873	89711873	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89711873	89711873	A	G	SNP	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	splice_site	c.493-2	e6-2	1.000	-	-	-	no_errors	
PTK7	5754	genome.wustl.edu	37	6	43107257	43107257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43107257	43107257	C	T	SNP	PTK7	NM_002821	human	genbank	57_37b	+1	reviewed	missense	c.1612	p.R538W	0.988	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
RAB3C	115827	genome.wustl.edu	37	5	57913553	57913553	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	57913553	57913553	C	G	SNP	RAB3C	NM_138453	human	genbank	57_37b	+1	provisional	missense	c.108	p.I36M	0.912	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors	
RGAG1	57529	genome.wustl.edu	37	X	109694759	109694759	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	109694759	109694759	G	T	SNP	RGAG1	NM_020769	human	genbank	57_37b	+1	validated	missense	c.914	p.G305V	0.009	NULL	HMMPfam_Retrotrans_gag	-	no_errors	
RNF152	220441	genome.wustl.edu	37	18	59483310	59483310	+	Silent	SNP	G	G	A	rs4362478	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	59483310	59483310	G	A	SNP	RNF152	NM_173557	human	genbank	57_37b	-1	validated	silent	c.387	p.S129	0.021	NULL	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-		
RSL1D1	26156	genome.wustl.edu	37	16	11940376	11940376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11940376	11940376	G	A	SNP	RSL1D1	NM_015659	human	genbank	57_37b	-1	validated	missense	c.617	p.S206F	1.000	superfamily_Ribosomal protein L1	superfamily_Ribosomal protein L1	-	no_errors	
SLC9A3R1	9368	genome.wustl.edu	37	17	72764791	72764791	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72764791	72764791	T	C	SNP	SLC9A3R1	NM_004252	human	genbank	57_37b	+1	reviewed	missense	c.1073	p.L358P	1.000	HMMPfam_EBP50_C-term	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_EBP50_C-term	-	no_errors	
SLCO1A2	6579	genome.wustl.edu	37	12	21445147	21445147	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21445147	21445147	T	C	SNP	SLCO1A2	NM_021094	human	genbank	57_37b	-1	reviewed	missense	c.1561	p.S521G	0.929	superfamily_MFS general substrate transporter,HMMPfam_OATP	superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors	
SPTBN5	51332	genome.wustl.edu	37	15	42144894	42144894	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42144894	42144894	G	-	DEL	SPTBN5	NM_016642	human	genbank	57_37b	-1	validated	frame_shift_del	c.10282	p.Q3428fs	0.346	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	(deletion:cds_exon[42144832,42144933])	no_errors	
TIPARP	25976	genome.wustl.edu	37	3	156395929	156395929	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	156395929	156395929	G	T	SNP	TIPARP	NM_015508	human	genbank	57_37b	+1	provisional	missense	c.443	p.S148I	0.579	NULL	HMMPfam_zf-CCCH,superfamily_SSF56399,HMMPfam_PARP	-	no_errors	
TMTC3	160418	genome.wustl.edu	37	12	88589349	88589349	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	88589349	88589349	A	G	SNP	TMTC3	NM_181783	human	genbank	57_37b	+1	validated	missense	c.2668	p.I890V	1.000	NULL	HMMPfam_DUF1736,superfamily_Prenyl_trans,HMMPfam_TPR_1,HMMSmart_TPR	-	no_errors	
UBA7	7318	genome.wustl.edu	37	3	49847490	49847490	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49847490	49847490	G	A	SNP	UBA7	NM_003335	human	genbank	57_37b	-1	reviewed	missense	c.1760	p.S587L	0.000	superfamily_MoeB,HMMPfam_UBA_e1_thiolCys	PatternScan_UBIQUITIN_ACTIVAT_1,superfamily_MoeB,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors	
YIPF4	84272	genome.wustl.edu	37	2	32515694	32515694	+	Missense_Mutation	SNP	C	C	A	rs115575403	by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32515694	32515694	C	A	SNP	YIPF4	NM_032312	human	genbank	57_37b	+1	validated	missense	c.222	p.N74K	0.999	NULL	HMMPfam_Yip1	-		
ZCCHC2	54877	genome.wustl.edu	37	18	60242257	60242257	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	60242257	60242257	G	A	SNP	ZCCHC2	NM_017742	human	genbank	57_37b	+1	validated	silent	c.2943	p.A981	0.099	NULL	superfamily_PX,HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC	-	no_errors	
ZFP36L1	677	genome.wustl.edu	37	14	69257027	69257039	+	Frame_Shift_Del	DEL	GCTCAGAGCGGGG	GCTCAGAGCGGGG	-	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	GCTCAGAGCGGGG	GCTCAGAGCGGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69257027	69257039	GCTCAGAGCGGGG	-	DEL	ZFP36L1	NM_004926	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.240_228	p.P77fs	0.977:0.999:1.000:1.000:1.000:0.995:0.609:0.951:0.936:0.776:0.997:0.999:0.996	HMMPfam_Tis11B_N	HMMPfam_Tis11B_N,superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	(deletion:cds_exon[69256250,69257209])	no_errors	
ZNF238	10472	genome.wustl.edu	37	1	244218061	244218061	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	244218061	244218061	G	T	SNP	ZNF238	NM_205768	human	genbank	57_37b	+1	validated	missense	c.985	p.D329Y	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF574	64763	genome.wustl.edu	37	19	42585344	42585344	+	Silent	SNP	C	C	T	rs61732643	by1000genomes	TCGA-B6-A0IB-01	TCGA-B6-A0IB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42585344	42585344	C	T	SNP	ZNF574	NM_022752	human	genbank	57_37b	+1	validated	silent	c.2586	p.A862	0.129	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
