Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS9	56999	genome.wustl.edu	37	3	64589940	64589940	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	64589940	64589940	G	T	SNP	ADAMTS9	NM_182920	human	genbank	57_37b	-1	reviewed	missense	c.3542	p.A1181E	0.000	superfamily_TSP-1 type 1 repeat	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors	
ANK2	287	genome.wustl.edu	37	4	114199618	114199618	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	114199618	114199618	C	T	SNP	ANK2	NM_001148	human	genbank	57_37b	+1	reviewed	silent	c.1785	p.N595	0.988	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors	
ASXL3	80816	genome.wustl.edu	37	18	31325701	31325701	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	31325701	31325701	C	A	SNP	ASXL3	NM_030632	human	genbank	57_37b	+1	provisional	missense	c.5889	p.F1963L	0.998	NULL	NULL	-	no_errors	
ATG2A	23130	genome.wustl.edu	37	11	64669591	64669591	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64669591	64669591	C	T	SNP	ATG2A	NM_015104	human	genbank	57_37b	-1	validated	missense	c.3962	p.S1321N	1.000	NULL	PatternScan_OX2_COVAL_FAD,HMMPfam_ATG_C,PatternScan_ADH_ZINC	-	no_errors	
ATP2B3	492	genome.wustl.edu	37	X	152807210	152807210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152807210	152807210	G	A	SNP	ATP2B3	NM_001001344	human	genbank	57_37b	+1	reviewed	missense	c.490	p.V164I	1.000	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
BBS2	583	genome.wustl.edu	37	16	56536710	56536710	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	56536710	56536710	C	T	SNP	BBS2	NM_031885	human	genbank	57_37b	-1	reviewed	missense	c.815	p.R272Q	1.000	superfamily_WD40 repeat-like,HMMPfam_FG-GAP	superfamily_WD40 repeat-like,HMMPfam_FG-GAP	-	no_errors	
BCL2L13	23786	genome.wustl.edu	37	22	18209657	18209657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18209657	18209657	G	T	SNP	BCL2L13	NM_015367	human	genbank	57_37b	+1	validated	missense	c.815	p.G272V	1.000	NULL	superfamily_Bcl-2 inhibitors of programmed cell death,HMMPfam_Bcl-2	-	no_errors	
BECN1L1	441925	genome.wustl.edu	37	1	242121540	242121540	+	Missense_Mutation	SNP	G	G	A	rs56335758	byCluster;by1000genomes	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	242121540	242121540	G	A	SNP	BECN1L1	XM_497740	human	genbank	57_37b	+1	model	missense	c.472	p.E158K	0.002	HMMPfam_APG6	HMMPfam_APG6	-		
BLCAP	10904	genome.wustl.edu	37	20	36147543	36147543	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36147543	36147543	G	C	SNP	BLCAP	NM_006698	human	genbank	57_37b	-1	reviewed	missense	c.34	p.L12V	1.000	HMMPfam_BC10	HMMPfam_BC10	-	no_errors	
C10orf92	54777	genome.wustl.edu	37	10	134649709	134649709	+	Missense_Mutation	SNP	C	C	T	rs76581191	byCluster;by1000genomes	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	134649709	134649709	C	T	SNP	C10orf92	ENST00000368586	human	ensembl	57_37b	-1	known	missense	c.6550	p.G2184S	0.000	NULL	superfamily_TPR-like	-		
C16orf78	123970	genome.wustl.edu	37	16	49433130	49433130	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	49433130	49433130	G	A	SNP	C16orf78	NM_144602	human	genbank	57_37b	+1	predicted	missense	c.739	p.V247I	0.002	NULL	NULL	-	no_errors	
C2orf29	55571	genome.wustl.edu	37	2	101879132	101879132	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	101879132	101879132	G	A	SNP	C2orf29	NM_017546	human	genbank	57_37b	+1	validated	missense	c.811	p.G271R	1.000	NULL	HMMPfam_DUF2363	-	no_errors	
C9orf153	389766	genome.wustl.edu	37	9	88842313	88842313	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	88842313	88842313	T	A	SNP	C9orf153	NM_001010907	human	genbank	57_37b	-1	predicted	splice_site	c.243-2	e3-2	0.000	-	-	-	no_errors	
DAAM1	23002	genome.wustl.edu	37	14	59792440	59792440	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	59792440	59792440	T	A	SNP	DAAM1	NM_014992	human	genbank	57_37b	+1	reviewed	missense	c.1048	p.F350I	1.000	HMMPfam_Drf_FH3	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors	
EEF2K	29904	genome.wustl.edu	37	16	22268146	22268146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	22268146	22268146	C	T	SNP	EEF2K	NM_013302	human	genbank	57_37b	+1	reviewed	silent	c.696	p.I232	0.984	superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase	superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase,HMMPfam_Sel1,superfamily_SSF81901	-	no_errors	
EFHC2	80258	genome.wustl.edu	37	X	44094685	44094685	+	Missense_Mutation	SNP	G	G	T	rs2208592	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	44094685	44094685	G	T	SNP	EFHC2	ENST00000333807	human	ensembl	57_37b	-1	known	missense	c.1289	p.S430Y	0.000	NULL	HMMSmart_SM00676,HMMPfam_DUF1126,superfamily_EF-hand	-		
ENSG00000247337	0	genome.wustl.edu	37	6	167764349	167764350	+	RNA	INS	-	-	GAAGGCAACGG	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	167764349	167764350	-	GAAGGCAACGG	INS	ENSG00000247337	ENST00000499858	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.005:0.004	-	-	-	no_errors	
FAM83E	54854	genome.wustl.edu	37	19	49116555	49116555	+	Silent	SNP	A	A	G	rs368654	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49116555	49116555	A	G	SNP	FAM83E	NM_017708	human	genbank	57_37b	-1	validated	silent	c.75	p.F25	0.621	HMMPfam_DUF1669	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	-		
FLG	2312	genome.wustl.edu	37	1	152285981	152285981	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152285981	152285981	G	A	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.1381	p.R461W	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors	
GPR52	9293	genome.wustl.edu	37	1	174417411	174417411	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	174417411	174417411	C	A	SNP	GPR52	NM_005684	human	genbank	57_37b	+1	validated	silent	c.162	p.I54	1.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
LOC100129396	0	genome.wustl.edu	37	17	16692262	16692262	+	RNA	SNP	C	T	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16692262	16692262	C	T	SNP	LOC100129396	NR_026810	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.025	-	-	-	no_errors	
LRRC43	254050	genome.wustl.edu	37	12	122669187	122669187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122669187	122669187	G	A	SNP	LRRC43	NM_001098519	human	genbank	57_37b	+1	validated	missense	c.272	p.R91H	0.836	NULL	superfamily_Outer arm dynein light chain 1	-	no_errors	
LSR	51599	genome.wustl.edu	37	19	35758275	35758276	+	In_Frame_Ins	INS	-	-	GGA	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35758275	35758276	-	GGA	INS	LSR	NM_205834	human	genbank	57_37b	+1	validated	in_frame_ins	c.1552_1553	p.520in_frame_insR	0.950:0.994	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_LSR,PatternScan_ADH_SHORT	-	no_errors	
MARCO	8685	genome.wustl.edu	37	2	119752091	119752091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	119752091	119752091	G	A	SNP	MARCO	NM_006770	human	genbank	57_37b	+1	reviewed	missense	c.1558	p.V520I	0.006	NULL	HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors	
MED12	9968	genome.wustl.edu	37	X	70344907	70344907	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70344907	70344907	C	T	SNP	MED12	NM_005120	human	genbank	57_37b	+1	reviewed	missense	c.2137	p.P713S	0.162	NULL	HMMPfam_Med12	-	no_errors	
MRC1	4360	genome.wustl.edu	37	10	18155491	18155491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	18155491	18155491	G	A	SNP	MRC1	NM_002438	human	genbank	57_37b	+1	validated	missense	c.1784	p.G595E	0.997	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
MYO3A	53904	genome.wustl.edu	37	10	26243889	26243889	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	26243889	26243889	C	T	SNP	MYO3A	NM_017433	human	genbank	57_37b	+1	reviewed	silent	c.255	p.Y85	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ	-	no_errors	
NPFFR2	10886	genome.wustl.edu	37	4	72897694	72897694	+	Missense_Mutation	SNP	G	G	C	rs71655703	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	72897694	72897694	G	C	SNP	NPFFR2	NM_004885	human	genbank	57_37b	+1	reviewed	missense	c.76	p.E26Q	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
NPTX2	4885	genome.wustl.edu	37	7	98254285	98254285	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	98254285	98254285	G	A	SNP	NPTX2	NM_002523	human	genbank	57_37b	+1	reviewed	missense	c.695	p.R232H	1.000	HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin	HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin,PatternScan_PENTAXIN	-	no_errors	
NSMCE4A	54780	genome.wustl.edu	37	10	123719061	123719062	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	123719061	123719062	TT	-	DEL	NSMCE4A	NM_017615	human	genbank	57_37b	-1	validated	frame_shift_del	c.1038_1037	p.Q346fs	0.220:0.489	HMMPfam_Nse4	HMMPfam_Nse4	(deletion:cds_exon[123719016,123719110])	no_errors	
ODZ4	26011	genome.wustl.edu	37	11	78433879	78433879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78433879	78433879	G	A	SNP	ODZ4	NM_001098816	human	genbank	57_37b	-1	validated	missense	c.3634	p.R1212W	1.000	NULL	HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196,superfamily_SSF101898,superfamily_TolB_C,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
OPA1	4976	genome.wustl.edu	37	3	193386239	193386239	+	Silent	SNP	C	C	T	rs12494482	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	193386239	193386239	C	T	SNP	OPA1	ENST00000429164	human	ensembl	57_37b	+1	known	silent	c.222	p.P74	0.001	NULL	NULL	-		
OR2T3	343173	genome.wustl.edu	37	1	248636826	248636826	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248636826	248636826	C	T	SNP	OR2T3	NM_001005495	human	genbank	57_37b	+1	provisional	missense	c.175	p.R59C	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PDS5B	23047	genome.wustl.edu	37	13	33344430	33344430	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	33344430	33344430	G	C	SNP	PDS5B	NM_015032	human	genbank	57_37b	+1	validated	missense	c.3796	p.E1266Q	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_AT_hook	-	no_errors	
PGK1	5230	genome.wustl.edu	37	X	77378339	77378339	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77378339	77378339	G	T	SNP	PGK1	NM_000291	human	genbank	57_37b	+1	reviewed	missense	c.649	p.V217F	1.000	HMMPfam_PGK,superfamily_Phosphoglycerate kinase	HMMPfam_PGK,superfamily_Phosphoglycerate kinase,PatternScan_PGLYCERATE_KINASE	-	no_errors	
PHF20	51230	genome.wustl.edu	37	20	34459596	34459605	+	Frame_Shift_Del	DEL	CTGGCCAGGT	CTGGCCAGGT	-	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	CTGGCCAGGT	CTGGCCAGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34459596	34459605	CTGGCCAGGT	-	DEL	PHF20	NM_016436	human	genbank	57_37b	+1	validated	frame_shift_del	c.1127_1136	p.G377fs	1.000:1.000:1.000:1.000:0.997:0.994:0.995:0.997:0.998:0.999	NULL	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	(deletion:cds_exon[34459572,34459751])	no_errors	
PRX	57716	genome.wustl.edu	37	19	40902613	40902627	+	In_Frame_Del	DEL	GGCAGCTGTACCTCT	GGCAGCTGTACCTCT	-	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	GGCAGCTGTACCTCT	GGCAGCTGTACCTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40902613	40902627	GGCAGCTGTACCTCT	-	DEL	PRX	NM_181882	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1646_1632	p.EVQLP545in_frame_del	0.008:0.012:0.003:0.304:0.256:0.226:0.126:0.053:0.000:0.000:0.000:0.002:0.684:0.917:0.900	NULL	HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228	(deletion:cds_exon[40899873,40903877])	no_errors	
PTGER3	5733	genome.wustl.edu	37	1	71512366	71512366	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	71512366	71512366	G	C	SNP	PTGER3	NM_198718	human	genbank	57_37b	-1	reviewed	missense	c.895	p.L299V	0.881	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
RB1	5925	genome.wustl.edu	37	13	49050933	49050933	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	49050933	49050933	A	G	SNP	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	missense	c.2617	p.K873E	1.000	HMMPfam_Rb_C	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors	
RELN	5649	genome.wustl.edu	37	7	103276003	103276003	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103276003	103276003	G	T	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	missense	c.2334	p.S778R	1.000	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors	
SEMA5B	54437	genome.wustl.edu	37	3	122632436	122632436	+	Missense_Mutation	SNP	A	A	G	rs2276781	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122632436	122632436	A	G	SNP	SEMA5B	NM_001031702	human	genbank	57_37b	-1	validated	missense	c.2225	p.M742T	1.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-		
SLC22A20	440044	genome.wustl.edu	37	11	64981837	64981837	+	Missense_Mutation	SNP	C	C	T	rs12420456	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64981837	64981837	C	T	SNP	SLC22A20	NM_001004326	human	genbank	57_37b	+1	validated	missense	c.422	p.A141V	1.000	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-		
SLC35F3	148641	genome.wustl.edu	37	1	234452419	234452419	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	234452419	234452419	C	T	SNP	SLC35F3	NM_173508	human	genbank	57_37b	+1	provisional	silent	c.900	p.S300	0.001	NULL	superfamily_SSF103481,HMMPfam_DUF6	-	no_errors	
SPACA3	124912	genome.wustl.edu	37	17	31318972	31318972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	31318972	31318972	C	T	SNP	SPACA3	NM_173847	human	genbank	57_37b	+1	provisional	missense	c.16	p.R6W	0.031	NULL	HMMPfam_Lys,superfamily_Lysozyme-like,HMMSmart_SM00263,PatternScan_LACTALBUMIN_LYSOZYME_1	-	no_errors	
SYT4	6860	genome.wustl.edu	37	18	40853841	40853841	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	40853841	40853841	C	T	SNP	SYT4	NM_020783	human	genbank	57_37b	-1	validated	missense	c.553	p.E185K	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
TM9SF1	10548	genome.wustl.edu	37	14	24664018	24664018	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24664018	24664018	C	T	SNP	TM9SF1	NM_006405	human	genbank	57_37b	-1	validated	missense	c.208	p.E70K	1.000	HMMPfam_EMP70	HMMPfam_EMP70	-	no_errors	
TNXB	7148	genome.wustl.edu	37	6	32017242	32017242	+	Missense_Mutation	SNP	C	C	T	rs61745920	unknown	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32017242	32017242	C	T	SNP	TNXB	NM_019105	human	genbank	57_37b	-1	reviewed	missense	c.9556	p.V3186I	0.959	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-		
WNK2	65268	genome.wustl.edu	37	9	96021312	96021312	+	Missense_Mutation	SNP	G	G	A	rs10761203	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0IG-01	TCGA-B6-A0IG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	96021312	96021312	G	A	SNP	WNK2	NM_006648	human	genbank	57_37b	+1	reviewed	missense	c.2482	p.V828M	0.208	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-		
