Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AADACL2	344752	genome.wustl.edu	37	3	151474973	151474973	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	151474973	151474973	G	A	SNP	AADACL2	NM_207365	human	genbank	57_37b	+1	validated	missense	c.797	p.R266K	0.009	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER	-	no_errors	
ABCB10	23456	genome.wustl.edu	37	1	229663041	229663041	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	229663041	229663041	C	G	SNP	ABCB10	NM_012089	human	genbank	57_37b	-1	reviewed	missense	c.1660	p.D554H	0.998	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran	superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABHD15	116236	genome.wustl.edu	37	17	27889902	27889902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27889902	27889902	C	T	SNP	ABHD15	NM_198147	human	genbank	57_37b	-1	validated	missense	c.1084	p.V362M	0.346	superfamily_alpha/beta-Hydrolases	superfamily_alpha/beta-Hydrolases	-	no_errors	
AMHR2	269	genome.wustl.edu	37	12	53819509	53819509	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53819509	53819509	G	C	SNP	AMHR2	NM_020547	human	genbank	57_37b	+1	reviewed	missense	c.658	p.G220R	0.814	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Snake toxin-like,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	-	no_errors	
ANAPC5	51433	genome.wustl.edu	37	12	121746366	121746366	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121746366	121746366	C	A	SNP	ANAPC5	NM_016237	human	genbank	57_37b	-1	reviewed	nonsense	c.2185	p.E729*	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00028	-	no_errors	
AP3M1	26985	genome.wustl.edu	37	10	75884140	75884140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75884140	75884140	G	A	SNP	AP3M1	NM_012095	human	genbank	57_37b	-1	reviewed	missense	c.1154	p.S385L	1.000	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	superfamily_SNARE-like,HMMPfam_Clat_adaptor_s,PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors	
C10orf137	26098	genome.wustl.edu	37	10	127429725	127429725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	127429725	127429725	G	A	SNP	C10orf137	NM_015608	human	genbank	57_37b	+1	validated	missense	c.2224	p.D742N	1.000	NULL	NULL	-	no_errors	
C6orf211	79624	genome.wustl.edu	37	6	151789511	151789511	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151789511	151789511	C	A	SNP	C6orf211	NM_024573	human	genbank	57_37b	+1	predicted	missense	c.592	p.L198I	0.401	HMMPfam_DUF89,superfamily_DUF89	HMMPfam_DUF89,superfamily_DUF89	-	no_errors	
CKMT2	1160	genome.wustl.edu	37	5	80562003	80562003	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	80562003	80562003	G	A	SNP	CKMT2	NM_001099735	human	genbank	57_37b	+1	reviewed	missense	c.1186	p.D396N	1.000	superfamily_SSF55931,HMMPfam_ATP-gua_Ptrans	superfamily_ATP-gua_Ptrans,HMMPfam_ATP-gua_PtransN,superfamily_SSF55931,HMMPfam_ATP-gua_Ptrans,PatternScan_GUANIDO_KINASE	-	no_errors	
CLCN2	1181	genome.wustl.edu	37	3	184070098	184070098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	184070098	184070098	C	T	SNP	CLCN2	NM_004366	human	genbank	57_37b	-1	reviewed	missense	c.2293	p.E765K	0.958	HMMPfam_CBS	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS	-	no_errors	
COASY	80347	genome.wustl.edu	37	17	40714751	40714752	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40714751	40714752	-	T	INS	COASY	NM_001042532	human	genbank	57_37b	+1	validated	frame_shift_ins	c.198_199	p.Y66fs	0.915:1.000	NULL	superfamily_SSF52374,HMMPfam_CTP_transf_2,HMMPfam_CoaE,superfamily_SSF52540	-	no_errors	
COG8	84342	genome.wustl.edu	37	16	69370510	69370510	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69370510	69370510	G	A	SNP	COG8	NM_032382	human	genbank	57_37b	-1	reviewed	silent	c.483	p.L161	0.838	HMMPfam_Dor1	HMMPfam_Dor1	-	no_errors	
CTBS	1486	genome.wustl.edu	37	1	85028998	85028998	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	85028998	85028998	C	T	SNP	CTBS	NM_004388	human	genbank	57_37b	-1	validated	missense	c.899	p.S300N	0.897	superfamily_(Trans)glycosidases,HMMSmart_SM00636,HMMPfam_Glyco_hydro_18	superfamily_(Trans)glycosidases,HMMSmart_SM00636,HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18	-	no_errors	
CXorf38	159013	genome.wustl.edu	37	X	40489945	40489945	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	40489945	40489945	C	T	SNP	CXorf38	NM_144970	human	genbank	57_37b	-1	validated	silent	c.882	p.Q294	1.000	NULL	NULL	-	no_errors	
DACH2	117154	genome.wustl.edu	37	X	85404051	85404051	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	85404051	85404051	C	G	SNP	DACH2	NM_053281	human	genbank	57_37b	+1	reviewed	missense	c.427	p.R143G	1.000	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain	-	no_errors	
DDB2	1643	genome.wustl.edu	37	11	47259551	47259551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47259551	47259551	C	T	SNP	DDB2	NM_000107	human	genbank	57_37b	+1	reviewed	missense	c.1187	p.S396L	1.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
DOCK9	23348	genome.wustl.edu	37	13	99460026	99460026	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	99460026	99460026	A	C	SNP	DOCK9	ENST00000357329	human	ensembl	57_37b	-1	known	missense	c.5448	p.I1816M	0.999	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors	
ENPP1	5167	genome.wustl.edu	37	6	132185712	132185712	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	132185712	132185712	G	T	SNP	ENPP1	NM_006208	human	genbank	57_37b	+1	reviewed	splice_site	c.1091+1	e10+1	1.000	-	-	-	no_errors	
ENSG00000210082	0	genome.wustl.edu	37	MT	1747	1747	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	1747	1747	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000246282	0	genome.wustl.edu	37	19	37642165	37642165	+	RNA	SNP	G	G	A	rs1047333	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37642165	37642165	G	A	SNP	ENSG00000246282	ENST00000500245	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
FAM151A	338094	genome.wustl.edu	37	1	55075435	55075435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55075435	55075435	G	A	SNP	FAM151A	NM_176782	human	genbank	57_37b	-1	validated	missense	c.1264	p.R422W	1.000	NULL	HMMPfam_DUF2181	-	no_errors	
FAM71E2	284418	genome.wustl.edu	37	19	55872361	55872361	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55872361	55872361	C	T	SNP	FAM71E2	ENST00000326070	human	ensembl	57_37b	-1	known	silent	c.765	p.A255	0.001	NULL	NULL	-	no_errors	
FLG2	388698	genome.wustl.edu	37	1	152328629	152328629	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152328629	152328629	G	T	SNP	FLG2	NM_001014342	human	genbank	57_37b	-1	provisional	missense	c.1633	p.Q545K	0.079	NULL	superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin	-	no_errors	
FLJ10357	55701	genome.wustl.edu	37	14	21549152	21549152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21549152	21549152	C	T	SNP	FLJ10357	NM_018071	human	genbank	57_37b	+1	validated	missense	c.2617	p.R873W	0.997	NULL	superfamily_DBL homology domain (DH-domain),superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors	
GCKR	2646	genome.wustl.edu	37	2	27722054	27722054	+	Missense_Mutation	SNP	C	C	A	rs8179207	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27722054	27722054	C	A	SNP	GCKR	NM_001486	human	genbank	57_37b	+1	reviewed	missense	c.474	p.H158Q	0.016	superfamily_SIS domain	superfamily_SIS domain,PatternScan_GCKR	-		
GTF2F2	2963	genome.wustl.edu	37	13	45694817	45694817	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	45694817	45694817	G	A	SNP	GTF2F2	NM_004128	human	genbank	57_37b	+1	validated	silent	c.27	p.L9	1.000	superfamily_TFIIF_interactn,HMMPfam_TFIIF_beta	superfamily_TFIIF_interactn,HMMPfam_TFIIF_beta,superfamily_SSF46785	-	no_errors	
HHAT	55733	genome.wustl.edu	37	1	210847683	210847683	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	210847683	210847683	G	T	SNP	HHAT	NM_001122834	human	genbank	57_37b	+1	validated	missense	c.1444	p.V482L	0.996	NULL	HMMPfam_MBOAT	-	no_errors	
HSPG2	3339	genome.wustl.edu	37	1	22157965	22157965	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22157965	22157965	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	57_37b	-1	known	missense	c.11443	p.G3815S	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1	-	no_errors	
IPCEF1	26034	genome.wustl.edu	37	6	154521037	154521038	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	154521037	154521038	TG	-	DEL	IPCEF1	NM_001130699	human	genbank	57_37b	-1	validated	frame_shift_del	c.675_674	p.T225fs	0.000:0.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	(deletion:cds_exon[154520802,154521174])	no_errors	
ISLR2	57611	genome.wustl.edu	37	15	74426742	74426742	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74426742	74426742	C	T	SNP	ISLR2	NM_001130136	human	genbank	57_37b	+1	validated	silent	c.1647	p.G549	0.988	NULL	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	-	no_errors	
KCNJ12	3768	genome.wustl.edu	37	17	21319341	21319341	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	21319341	21319341	C	T	SNP	KCNJ12	NM_021012	human	genbank	57_37b	+1	validated	silent	c.687	p.R229	0.231	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK_N,superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	-	no_errors	
KIF1C	10749	genome.wustl.edu	37	17	4925966	4925966	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4925966	4925966	C	T	SNP	KIF1C	NM_006612	human	genbank	57_37b	+1	provisional	missense	c.2590	p.R864C	1.000	NULL	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	-	no_errors	
LOC100289151	0	genome.wustl.edu	37	10	15059247	15059247	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15059247	15059247	T	C	SNP	LOC100289151	XM_002342972	human	genbank	57_37b	-1	model	silent	c.126	p.R42	0.652	NULL	NULL	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56168740	56168740	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56168740	56168740	C	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.1594	p.R532*	0.998	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56170880	56170880	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56170880	56170880	G	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.1708	p.G570fs	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56170859,56171137])	no_errors	
MUC4	4585	genome.wustl.edu	37	3	195507062	195507062	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195507062	195507062	C	T	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	missense	c.11005	p.D3669N	0.860	NULL	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-	no_errors	
MUC4	4585	genome.wustl.edu	37	3	195510156	195510156	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195510156	195510156	G	A	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	silent	c.7911	p.H2637	0.035	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors	
NCOR2	9612	genome.wustl.edu	37	12	124816874	124816874	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124816874	124816874	G	C	SNP	NCOR2	NM_006312	human	genbank	57_37b	-1	validated	missense	c.6916	p.P2306A	0.990	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
NCRNA00200	0	genome.wustl.edu	37	10	1206562	1206562	+	RNA	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	1206562	1206562	C	T	SNP	NCRNA00200	NR_015376	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.001	-	-	-	no_errors	
NEFM	4741	genome.wustl.edu	37	8	24774763	24774763	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	24774763	24774763	G	C	SNP	NEFM	NM_005382	human	genbank	57_37b	+1	reviewed	missense	c.1395	p.E465D	0.998	NULL	HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF	-	no_errors	
NEFM	4741	genome.wustl.edu	37	8	24775733	24775733	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	24775733	24775733	G	A	SNP	NEFM	NM_005382	human	genbank	57_37b	+1	reviewed	missense	c.2365	p.D789N	0.163	NULL	HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF	-	no_errors	
NFRKB	4798	genome.wustl.edu	37	11	129762649	129762649	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	129762649	129762649	T	C	SNP	NFRKB	NM_006165	human	genbank	57_37b	-1	validated	silent	c.135	p.G45	0.423	NULL	NULL	-	no_errors	
NINL	22981	genome.wustl.edu	37	20	25507207	25507207	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	25507207	25507207	T	G	SNP	NINL	NM_025176	human	genbank	57_37b	-1	validated	missense	c.17	p.N6T	0.048	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
PCDHA9	9752	genome.wustl.edu	37	5	140229589	140229589	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140229589	140229589	G	A	SNP	PCDHA9	NM_031857	human	genbank	57_37b	+1	reviewed	silent	c.1509	p.S503	0.770	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PEBP1	5037	genome.wustl.edu	37	12	118574086	118574086	+	Silent	SNP	G	G	C	rs11554100	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	118574086	118574086	G	C	SNP	PEBP1	NM_002567	human	genbank	57_37b	+1	validated	silent	c.72	p.P24	0.994	superfamily_PEBP-like,HMMPfam_PBP	superfamily_PEBP-like,HMMPfam_PBP,PatternScan_PBP	-		
PLCG2	5336	genome.wustl.edu	37	16	81902858	81902858	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81902858	81902858	C	A	SNP	PLCG2	NM_002661	human	genbank	57_37b	+1	validated	silent	c.519	p.I173	1.000	superfamily_SSF47473	superfamily_SSF50729,HMMSmart_PH,HMMPfam_PH,superfamily_SSF47473,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
PLG	5340	genome.wustl.edu	37	6	161173261	161173261	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	161173261	161173261	G	A	SNP	PLG	NM_000301	human	genbank	57_37b	+1	reviewed	missense	c.2240	p.G747E	0.004	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_SSF57414,HMMSmart_PAN_AP,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
POLG	5428	genome.wustl.edu	37	15	89870412	89870412	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	89870412	89870412	C	T	SNP	POLG	NM_001126131	human	genbank	57_37b	-1	reviewed	silent	c.1419	p.L473	1.000	NULL	superfamily_SSF56672,HMMPfam_DNA_pol_A,HMMSmart_POLAc,PatternScan_DNA_POLYMERASE_A	-	no_errors	
PRKAR1A	5573	genome.wustl.edu	37	17	66521903	66521903	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66521903	66521903	T	C	SNP	PRKAR1A	NM_002734	human	genbank	57_37b	+1	reviewed	silent	c.558	p.V186	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	HMMPfam_RIIa,HMMSmart_SM00394,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors	
PTEN	5728	genome.wustl.edu	37	10	89692794	89692794	+	Missense_Mutation	SNP	A	A	T	rs121909238	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89692794	89692794	A	T	SNP	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	missense	c.278	p.H93L	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-		
RAD18	56852	genome.wustl.edu	37	3	8932110	8932110	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	8932110	8932110	G	A	SNP	RAD18	NM_020165	human	genbank	57_37b	-1	reviewed	missense	c.1348	p.L450F	0.059	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00734,HMMPfam_SAP,HMMSmart_SM00513	-	no_errors	
RBM10	8241	genome.wustl.edu	37	X	47044963	47044963	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47044963	47044963	C	T	SNP	RBM10	NM_005676	human	genbank	57_37b	+1	reviewed	silent	c.2289	p.L763	0.978	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors	
RIF1	55183	genome.wustl.edu	37	2	152285358	152285358	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152285358	152285358	C	T	SNP	RIF1	NM_018151	human	genbank	57_37b	+1	validated	missense	c.847	p.R283C	1.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
SLC38A10	124565	genome.wustl.edu	37	17	79226469	79226469	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79226469	79226469	C	A	SNP	SLC38A10	NM_001037984	human	genbank	57_37b	-1	validated	missense	c.1471	p.V491L	0.013	NULL	HMMPfam_Aa_trans	-	no_errors	
SP100	6672	genome.wustl.edu	37	2	231367806	231367806	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	231367806	231367806	G	C	SNP	SP100	NM_001080391	human	genbank	57_37b	+1	validated	missense	c.1746	p.L582F	0.002	NULL	HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors	
TMIGD1	388364	genome.wustl.edu	37	17	28656338	28656338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	28656338	28656338	C	T	SNP	TMIGD1	NM_206832	human	genbank	57_37b	-1	provisional	missense	c.292	p.G98R	0.994	HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_ig	HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_ig,HMMSmart_SM00408	-	no_errors	
TMPRSS6	164656	genome.wustl.edu	37	22	37485669	37485669	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37485669	37485669	C	G	SNP	TMPRSS6	NM_153609	human	genbank	57_37b	-1	reviewed	missense	c.812	p.R271P	1.000	superfamily_Spermadhesin CUB domain	superfamily_SEA domain,superfamily_Spermadhesin CUB domain,superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_Ldl_recept_a,PatternScan_LDLRA_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
TMTC2	160335	genome.wustl.edu	37	12	83526091	83526091	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	83526091	83526091	G	C	SNP	TMTC2	NM_152588	human	genbank	57_37b	+1	provisional	missense	c.2434	p.D812H	1.000	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors	
TTC7B	145567	genome.wustl.edu	37	14	91110527	91110527	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	91110527	91110527	C	T	SNP	TTC7B	NM_001010854	human	genbank	57_37b	-1	provisional	missense	c.1616	p.R539H	1.000	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors	
UBE4A	9354	genome.wustl.edu	37	11	118239367	118239367	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118239367	118239367	A	G	SNP	UBE4A	NM_004788	human	genbank	57_37b	+1	reviewed	missense	c.143	p.D48G	1.000	NULL	HMMPfam_Ufd2P_core,HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box	-	no_errors	
USP11	8237	genome.wustl.edu	37	X	47092577	47092577	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47092577	47092577	C	T	SNP	USP11	NM_004651	human	genbank	57_37b	+1	reviewed	silent	c.264	p.G88	0.234	NULL	HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
WAS	7454	genome.wustl.edu	37	X	48547798	48547798	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48547798	48547798	G	A	SNP	WAS	NM_000377	human	genbank	57_37b	+1	reviewed	silent	c.1428	p.K476	1.000	superfamily_WASP_C	superfamily_SSF50729,HMMPfam_WH1,HMMSmart_WH1,HMMPfam_PBD,HMMSmart_PBD,superfamily_WASP_C,HMMPfam_WH2,HMMSmart_WH2	-	no_errors	
WDR67	93594	genome.wustl.edu	37	8	124162367	124162367	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124162367	124162367	G	A	SNP	WDR67	NM_145647	human	genbank	57_37b	+1	validated	silent	c.3066	p.Q1022	0.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors	
ZFHX3	463	genome.wustl.edu	37	16	72993144	72993144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72993144	72993144	C	T	SNP	ZFHX3	NM_006885	human	genbank	57_37b	-1	reviewed	missense	c.901	p.A301T	1.000	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
ZNF389	651302	genome.wustl.edu	37	6	28135014	28135014	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28135014	28135014	G	A	SNP	ZNF389	NM_001145129	human	genbank	57_37b	+1	provisional	silent	c.678	p.T226	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF75D	7626	genome.wustl.edu	37	X	134427818	134427818	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IO-01	TCGA-B6-A0IO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134427818	134427818	G	A	SNP	ZNF75D	NM_007131	human	genbank	57_37b	-1	validated	silent	c.249	p.H83	0.135	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
