Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACSS3	79611	genome.wustl.edu	37	12	81545639	81545639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	81545639	81545639	C	T	SNP	ACSS3	NM_024560	human	genbank	57_37b	+1	validated	missense	c.938	p.T313I	1.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
AHCTF1	25909	genome.wustl.edu	37	1	247079596	247079596	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247079596	247079596	C	A	SNP	AHCTF1	NM_015446	human	genbank	57_37b	-1	validated	nonsense	c.223	p.E75*	0.999	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors	
AHCTF1	25909	genome.wustl.edu	37	1	247079596	247079596	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247079596	247079596	C	A	SNP	AHCTF1	NM_015446	human	genbank	57_37b	-1	validated	nonsense	c.223	p.E75*	0.999	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors	
AMOTL1	154810	genome.wustl.edu	37	11	94532836	94532836	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	94532836	94532836	G	A	SNP	AMOTL1	NM_130847	human	genbank	57_37b	+1	reviewed	silent	c.480	p.P160	0.997	NULL	NULL	-	no_errors	
ANPEP	290	genome.wustl.edu	37	15	90349393	90349393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90349393	90349393	C	T	SNP	ANPEP	NM_001150	human	genbank	57_37b	-1	reviewed	missense	c.422	p.G141D	0.024	superfamily_SSF63737,HMMPfam_Peptidase_M1	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors	
CEPT1	10390	genome.wustl.edu	37	1	111724830	111724830	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	111724830	111724830	A	T	SNP	CEPT1	NM_001007794	human	genbank	57_37b	+1	reviewed	missense	c.736	p.M246L	1.000	HMMPfam_CDP-OH_P_transf	HMMPfam_CDP-OH_P_transf,PatternScan_CDP_ALCOHOL_P_TRANSF	-	no_errors	
DPP10	57628	genome.wustl.edu	37	2	116572515	116572515	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	116572515	116572515	A	T	SNP	DPP10	NM_020868	human	genbank	57_37b	+1	reviewed	missense	c.1847	p.H616L	1.000	superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors	
DPYSL2	1808	genome.wustl.edu	37	8	26484190	26484190	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	26484190	26484190	G	A	SNP	DPYSL2	NM_001386	human	genbank	57_37b	+1	validated	missense	c.536	p.C179Y	1.000	superfamily_Composite domain of metallo-dependent hydrolases,HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases	superfamily_Composite domain of metallo-dependent hydrolases,HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases	-	no_errors	
ENSG00000214679	0	genome.wustl.edu	37	15	76500480	76500480	+	RNA	SNP	G	C	C	rs11629459	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	76500480	76500480	G	C	SNP	ENSG00000214679	ENST00000499934	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.004	-	-	-		
ENSG00000245482	0	genome.wustl.edu	37	12	34175301	34175301	+	RNA	SNP	C	T	T	rs12372721	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	34175301	34175301	C	T	SNP	ENSG00000245482	ENST00000501954	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.012	-	-	-		
ENSG00000245914	0	genome.wustl.edu	37	3	13414864	13414864	+	RNA	SNP	G	A	A	rs6810132	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13414864	13414864	G	A	SNP	ENSG00000245914	ENST00000500340	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245999	0	genome.wustl.edu	37	17	2294048	2294048	+	RNA	SNP	A	C	C	rs2447094	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2294048	2294048	A	C	SNP	ENSG00000245999	ENST00000500871	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.095	-	-	-		
ENSG00000246314	0	genome.wustl.edu	37	15	27610713	27610713	+	RNA	SNP	A	G	G	rs12913023	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	27610713	27610713	A	G	SNP	ENSG00000246314	ENST00000501754	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246782	0	genome.wustl.edu	37	17	5190244	5190244	+	RNA	SNP	T	C	C	rs114071527	by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5190244	5190244	T	C	SNP	ENSG00000246782	ENST00000500938	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247699	0	genome.wustl.edu	37	5	159625345	159625345	+	RNA	SNP	G	A	A	rs62379585	byCluster;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	159625345	159625345	G	A	SNP	ENSG00000247699	ENST00000501818	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.001	-	-	-		
FAM22G	441457	genome.wustl.edu	37	9	99701178	99701178	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	99701178	99701178	A	C	SNP	FAM22G	ENST00000372322	human	ensembl	57_37b	+1	known	missense	c.1973	p.Q658P	0.009	NULL	NULL	-	no_errors	
FCGR2A	2212	genome.wustl.edu	37	1	161475284	161475284	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161475284	161475284	G	A	SNP	FCGR2A	NM_001136219	human	genbank	57_37b	+1	reviewed	silent	c.27	p.Q9	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
FLJ10661	286042	genome.wustl.edu	37	8	8097217	8097217	+	RNA	SNP	A	A	G	rs2980442	byCluster	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	8097217	8097217	A	G	SNP	FLJ10661	NR_024363	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.007	-	-	-		
GAB4	128954	genome.wustl.edu	37	22	17450868	17450868	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17450868	17450868	C	G	SNP	GAB4	NM_001037814	human	genbank	57_37b	-1	provisional	missense	c.902	p.R301T	0.989	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
GTSE1	51512	genome.wustl.edu	37	22	46712235	46712235	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46712235	46712235	A	T	SNP	GTSE1	NM_016426	human	genbank	57_37b	+1	reviewed	missense	c.1358	p.D453V	0.000	NULL	NULL	-	no_errors	
HKDC1	80201	genome.wustl.edu	37	10	71007230	71007230	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	71007230	71007230	G	T	SNP	HKDC1	NM_025130	human	genbank	57_37b	+1	validated	silent	c.1146	p.S382	0.000	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES	-	no_errors	
HRNR	388697	genome.wustl.edu	37	1	152185882	152185882	+	Silent	SNP	G	G	A	rs77559827	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152185882	152185882	G	A	SNP	HRNR	NM_001009931	human	genbank	57_37b	-1	validated	silent	c.8223	p.G2741	0.060	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-		
LOC144742	0	genome.wustl.edu	37	12	119721749	119721749	+	RNA	SNP	T	T	C	rs2727703	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	119721749	119721749	T	C	SNP	LOC144742	NR_024246	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.004	-	-	-		
LOC202181	202181	genome.wustl.edu	37	5	177045771	177045771	+	RNA	SNP	G	T	T	rs76636522	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	177045771	177045771	G	T	SNP	LOC202181	NR_026921	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.149	-	-	-		
LOC348021	348021	genome.wustl.edu	37	13	19585867	19585867	+	RNA	SNP	T	C	C	rs4769320	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19585867	19585867	T	C	SNP	LOC348021	NR_026852	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.004	-	-	-		
LOC642236	642236	genome.wustl.edu	37	9	68435907	68435907	+	RNA	SNP	A	A	G	rs118106267	by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	68435907	68435907	A	G	SNP	LOC642236	XR_041085	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-		
LYZL6	57151	genome.wustl.edu	37	17	34264775	34264775	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34264775	34264775	G	A	SNP	LYZL6	NM_020426	human	genbank	57_37b	-1	provisional	silent	c.285	p.H95	0.078	HMMPfam_Lys,superfamily_SSF53955,HMMSmart_LYZ1,PatternScan_LACTALBUMIN_LYSOZYME_1	HMMPfam_Lys,superfamily_SSF53955,HMMSmart_LYZ1,PatternScan_LACTALBUMIN_LYSOZYME_1	-	no_errors	
MEF2C	4208	genome.wustl.edu	37	5	88018447	88018447	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	88018447	88018447	G	A	SNP	MEF2C	NM_002397	human	genbank	57_37b	-1	validated	nonsense	c.1396	p.R466*	1.000	NULL	HMMSmart_SM00432,superfamily_SRF-like,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF	-	no_errors	
MEF2C	4208	genome.wustl.edu	37	5	88018447	88018447	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	88018447	88018447	G	A	SNP	MEF2C	NM_002397	human	genbank	57_37b	-1	validated	nonsense	c.1396	p.R466*	1.000	NULL	HMMSmart_SM00432,superfamily_SRF-like,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF	-	no_errors	
MYO5A	4644	genome.wustl.edu	37	15	52620094	52620094	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	52620094	52620094	C	T	SNP	MYO5A	NM_000259	human	genbank	57_37b	-1	reviewed	silent	c.4590	p.R1530	1.000	NULL	superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL	-	no_errors	
PCDH7	5099	genome.wustl.edu	37	4	30725361	30725361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	30725361	30725361	G	A	SNP	PCDH7	NM_032457	human	genbank	57_37b	+1	reviewed	missense	c.2176	p.D726N	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMPfam_Protocadherin	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors	
PLA2G4D	283748	genome.wustl.edu	37	15	42362138	42362138	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42362138	42362138	G	-	DEL	PLA2G4D	NM_178034	human	genbank	57_37b	-1	validated	frame_shift_del	c.2199	p.N734fs	1.000	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	(deletion:cds_exon[42362107,42362293])	no_errors	
PRB3	5544	genome.wustl.edu	37	12	11420444	11420444	+	Missense_Mutation	SNP	C	C	G	rs28605625	byCluster	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11420444	11420444	C	G	SNP	PRB3	ENST00000381842	human	ensembl	57_37b	-1	known	missense	c.613	p.E205Q	0.032	NULL	NULL	-		
SCN4B	6330	genome.wustl.edu	37	11	118004688	118004688	+	RNA	SNP	A	A	G	rs3741315	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118004688	118004688	A	G	SNP	SCN4B	NR_024527	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.000	-	-	-		
SFPQ	6421	genome.wustl.edu	37	1	35656463	35656463	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35656463	35656463	T	C	SNP	SFPQ	NM_005066	human	genbank	57_37b	-1	validated	missense	c.1151	p.N384S	1.000	HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_NOPS	-	no_errors	
SILV	6490	genome.wustl.edu	37	12	56349111	56349111	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56349111	56349111	G	A	SNP	SILV	NM_006928	human	genbank	57_37b	-1	validated	silent	c.1797	p.I599	0.192	NULL	superfamily_PKD domain,HMMPfam_PKD,HMMSmart_SM00089	-	no_errors	
SMYD1	150572	genome.wustl.edu	37	2	88390554	88390554	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	88390554	88390554	C	T	SNP	SMYD1	NM_198274	human	genbank	57_37b	+1	provisional	silent	c.552	p.L184	1.000	superfamily_SSF82199,HMMSmart_SET	superfamily_SSF82199,HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_SET	-	no_errors	
SRRM4	84530	genome.wustl.edu	37	12	119583290	119583290	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	119583290	119583290	C	T	SNP	SRRM4	NM_194286	human	genbank	57_37b	+1	validated	silent	c.876	p.S292	1.000	NULL	NULL	-	no_errors	
STAG1	10274	genome.wustl.edu	37	3	136136813	136136813	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136136813	136136813	C	G	SNP	STAG1	NM_005862	human	genbank	57_37b	-1	reviewed	missense	c.2110	p.A704P	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_STAG	-	no_errors	
TDRD6	221400	genome.wustl.edu	37	6	46657115	46657115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46657115	46657115	A	G	SNP	TDRD6	NM_001010870	human	genbank	57_37b	+1	validated	missense	c.1250	p.H417R	0.982	NULL	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748	-	no_errors	
THBS1	7057	genome.wustl.edu	37	15	39882178	39882178	+	Missense_Mutation	SNP	A	A	G	rs2228262	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	39882178	39882178	A	G	SNP	THBS1	NM_003246	human	genbank	57_37b	+1	reviewed	missense	c.2099	p.N700S	1.000	superfamily_TSP type-3 repeat	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,HMMPfam_TSP_C	-		
TP53	7157	genome.wustl.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577539	7577539	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.742	p.R248W	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRAT1	50852	genome.wustl.edu	37	3	108549621	108549621	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108549621	108549621	C	T	SNP	TRAT1	NM_016388	human	genbank	57_37b	+1	validated	nonsense	c.112	p.R38*	0.838	NULL	NULL	-	no_errors	
TRAT1	50852	genome.wustl.edu	37	3	108549621	108549621	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108549621	108549621	C	T	SNP	TRAT1	NM_016388	human	genbank	57_37b	+1	validated	nonsense	c.112	p.R38*	0.838	NULL	NULL	-	no_errors	
UBR4	23352	genome.wustl.edu	37	1	19464532	19464532	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19464532	19464532	C	G	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	missense	c.8875	p.E2959Q	1.000	NULL	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors	
UNC13C	440279	genome.wustl.edu	37	15	54556502	54556502	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	54556502	54556502	T	A	SNP	UNC13C	NM_001080534	human	genbank	57_37b	+1	provisional	silent	c.3585	p.I1195	1.000	NULL	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors	
UPF1	5976	genome.wustl.edu	37	19	18974986	18974986	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18974986	18974986	G	T	SNP	UPF1	NM_002911	human	genbank	57_37b	+1	reviewed	missense	c.2783	p.R928L	1.000	NULL	HMMPfam_UPF1_Zn_bind,superfamily_SSF52540,HMMPfam_ResIII	-	no_errors	
WDR48	57599	genome.wustl.edu	37	3	39136217	39136217	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39136217	39136217	C	T	SNP	WDR48	NM_020839	human	genbank	57_37b	+1	provisional	missense	c.2017	p.R673C	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
ZFPM2	23414	genome.wustl.edu	37	8	106431410	106431410	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	106431410	106431410	T	A	SNP	ZFPM2	NM_012082	human	genbank	57_37b	+1	reviewed	missense	c.79	p.C27S	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF415	55786	genome.wustl.edu	37	19	53612661	53612661	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53612661	53612661	C	A	SNP	ZNF415	NM_018355	human	genbank	57_37b	-1	validated	nonsense	c.637	p.E213*	0.907	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF415	55786	genome.wustl.edu	37	19	53612661	53612661	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BC-01	TCGA-BH-A0BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53612661	53612661	C	A	SNP	ZNF415	NM_018355	human	genbank	57_37b	-1	validated	nonsense	c.637	p.E213*	0.907	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
