Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AASDHPPT	60496	genome.wustl.edu	37	11	105967547	105967547	+	Silent	SNP	C	C	T	rs116058639	byCluster;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	105967547	105967547	C	T	SNP	AASDHPPT	NM_015423	human	genbank	57_37b	+1	reviewed	silent	c.843	p.A281	0.541	NULL	superfamily_4-PPT_transf,HMMPfam_ACPS	-		
AHRR	57491	genome.wustl.edu	37	5	434581	434581	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	434581	434581	C	G	SNP	AHRR	NM_020731	human	genbank	57_37b	+1	reviewed	missense	c.1792	p.P598A	0.995	NULL	HMMSmart_SM00353,HMMPfam_HLH,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors	
AOAH	313	genome.wustl.edu	37	7	36552857	36552857	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	36552857	36552857	C	T	SNP	AOAH	ENST00000431169	human	ensembl	57_37b	-1	known	silent	c.1848	p.E616	0.604	NULL	superfamily_Saposin,HMMSmart_SM00741,HMMPfam_SapB_2,HMMPfam_Lipase_GDSL,PatternScan_EGF_1	-	no_errors	
BMPER	168667	genome.wustl.edu	37	7	34192803	34192803	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	34192803	34192803	G	T	SNP	BMPER	NM_133468	human	genbank	57_37b	+1	validated	missense	c.1976	p.C659F	0.997	superfamily_Cysrich_TIL,HMMPfam_TIL	HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL	-	no_errors	
C7orf27	221927	genome.wustl.edu	37	7	2577781	2577781	+	Silent	SNP	T	T	C	rs1043291	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2577781	2577781	T	C	SNP	C7orf27	NM_152743	human	genbank	57_37b	-1	provisional	silent	c.2388	p.E796	0.958	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-		
CALML6	163688	genome.wustl.edu	37	1	1848228	1848228	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1848228	1848228	A	G	SNP	CALML6	NM_138705	human	genbank	57_37b	+1	validated	silent	c.291	p.L97	0.947	superfamily_SSF47473,HMMSmart_EFh	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
CCDC9	26093	genome.wustl.edu	37	19	47774668	47774668	+	Missense_Mutation	SNP	G	G	T	rs79550409	byCluster;byFrequency;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47774668	47774668	G	T	SNP	CCDC9	NM_015603	human	genbank	57_37b	+1	validated	missense	c.1329	p.E443D	0.300	NULL	NULL	-		
DCAF8L2	347442	genome.wustl.edu	37	X	27765025	27765025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	27765025	27765025	G	A	SNP	DCAF8L2	NM_001136533	human	genbank	57_37b	+1	provisional	missense	c.13	p.E5K	0.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
EZR	7430	genome.wustl.edu	37	6	159192434	159192434	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	159192434	159192434	A	-	DEL	EZR	NM_001111077	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.801	p.F267fs	1.000	superfamily_SSF50729,HMMPfam_FERM_C	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_ERM,superfamily_Moesin	(deletion:cds_exon[159192276,159192439])	no_errors	
FAM131C	348487	genome.wustl.edu	37	1	16386385	16386385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16386385	16386385	G	A	SNP	FAM131C	NM_182623	human	genbank	57_37b	-1	validated	missense	c.430	p.R144C	0.508	NULL	NULL	-	no_errors	
INTS1	26173	genome.wustl.edu	37	7	1542697	1542697	+	Silent	SNP	G	G	A	rs3752714	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	1542697	1542697	G	A	SNP	INTS1	NM_001080453	human	genbank	57_37b	-1	validated	silent	c.189	p.A63	0.132	NULL	PatternScan_ACTININ_1	-		
ITPR3	3710	genome.wustl.edu	37	6	33643558	33643558	+	Silent	SNP	G	A	A	rs2229637	byCluster;byFrequency;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33643558	33643558	G	A	SNP	ITPR3	NM_002224	human	genbank	57_37b	+1	validated	silent	c.3207	p.P1069	0.001	NULL	HMMPfam_Ins145_P3_rec,superfamily_MIR,HMMSmart_MIR,HMMPfam_MIR,superfamily_SSF100909,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-		
KIAA0495	57212	genome.wustl.edu	37	1	3662208	3662208	+	Missense_Mutation	SNP	G	A	A	rs79457354	byCluster;byFrequency;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	3662208	3662208	G	A	SNP	KIAA0495	NM_207306	human	genbank	57_37b	-1	predicted	missense	c.560	p.S187L	0.971	NULL	NULL	-		
LOC100128675	0	genome.wustl.edu	37	19	35565726	35565726	+	RNA	SNP	T	C	C	rs11882294	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35565726	35565726	T	C	SNP	LOC100128675	NR_024561	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.001	-	-	-		
MST1P9	0	genome.wustl.edu	37	1	17083778	17083778	+	Silent	SNP	C	C	T	rs78612194	byFrequency	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17083778	17083778	C	T	SNP	MST1P9	ENST00000455405	human	ensembl	57_37b	-1	known	silent	c.2097	p.T699	1.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	-		
OR1N1	138883	genome.wustl.edu	37	9	125289198	125289198	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125289198	125289198	G	A	SNP	OR1N1	NM_012363	human	genbank	57_37b	-1	provisional	silent	c.375	p.C125	0.163	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR6C1	390321	genome.wustl.edu	37	12	55714623	55714623	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55714623	55714623	G	A	SNP	OR6C1	NM_001005182	human	genbank	57_37b	+1	provisional	silent	c.240	p.L80	0.113	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR6V1	346517	genome.wustl.edu	37	7	142749782	142749782	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142749782	142749782	C	A	SNP	OR6V1	NM_001001667	human	genbank	57_37b	+1	provisional	missense	c.345	p.D115E	0.991	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHA13	56136	genome.wustl.edu	37	5	140263650	140263650	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140263650	140263650	C	T	SNP	PCDHA13	NM_018904	human	genbank	57_37b	+1	reviewed	silent	c.1797	p.A599	0.560	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCMTD2	55251	genome.wustl.edu	37	20	62896720	62896720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62896720	62896720	G	A	SNP	PCMTD2	NM_018257	human	genbank	57_37b	+1	validated	missense	c.520	p.E174K	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors	
PPM1L	151742	genome.wustl.edu	37	3	160783305	160783305	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	160783305	160783305	A	C	SNP	PPM1L	NM_139245	human	genbank	57_37b	+1	provisional	missense	c.689	p.D230A	1.000	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,HMMSmart_SM00331	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,HMMSmart_SM00331,PatternScan_PP2C	-	no_errors	
PROK2	60675	genome.wustl.edu	37	3	71821981	71821981	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	71821981	71821981	T	C	SNP	PROK2	NM_001126128	human	genbank	57_37b	-1	reviewed	splice_site	c.286-2	e4-2	0.999	-	-	-	no_errors	
RICTOR	253260	genome.wustl.edu	37	5	38958580	38958580	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	38958580	38958580	G	A	SNP	RICTOR	NM_152756	human	genbank	57_37b	-1	validated	silent	c.2385	p.S795	0.731	superfamily_ARM repeat,HMMPfam_RasGEF_N	superfamily_ARM repeat,HMMPfam_RasGEF_N	-	no_errors	
RNASE3	6037	genome.wustl.edu	37	14	21359857	21359857	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21359857	21359857	A	G	SNP	RNASE3	NM_002935	human	genbank	57_37b	+1	validated	silent	c.12	p.K4	0.000	NULL	superfamily_RNaseA,HMMSmart_RNAse_Pc,HMMPfam_RnaseA,PatternScan_RNASE_PANCREATIC	-	no_errors	
SNORD88A	0	genome.wustl.edu	37	19	51302716	51302716	+	RNA	SNP	G	A	A	rs3810284	byCluster;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51302716	51302716	G	A	SNP	SNORD88A	NR_003067	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.977	-	-	-		
SORCS2	57537	genome.wustl.edu	37	4	7714487	7714487	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7714487	7714487	C	T	SNP	SORCS2	NM_020777	human	genbank	57_37b	+1	reviewed	silent	c.1896	p.S632	0.593	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD	-	no_errors	
TMEM155	132332	genome.wustl.edu	37	4	122681612	122681612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	122681612	122681612	C	T	SNP	TMEM155	NM_152399	human	genbank	57_37b	-1	validated	missense	c.230	p.R77H	0.000	NULL	NULL	-	no_errors	
TMEM71	137835	genome.wustl.edu	37	8	133764098	133764098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133764098	133764098	C	T	SNP	TMEM71	NM_144649	human	genbank	57_37b	-1	validated	missense	c.247	p.D83N	0.923	NULL	NULL	-	no_errors	
TSPAN17	26262	genome.wustl.edu	37	5	176081907	176081907	+	Silent	SNP	C	C	T	rs11267007	byCluster;byFrequency;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176081907	176081907	C	T	SNP	TSPAN17	NM_012171	human	genbank	57_37b	+1	validated	silent	c.468	p.C156	0.984	HMMPfam_Tetraspannin,superfamily_Tetraspanin	HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin	-		
TTLL3	26140	genome.wustl.edu	37	3	9859333	9859333	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9859333	9859333	G	T	SNP	TTLL3	NM_001025930	human	genbank	57_37b	+1	provisional	missense	c.320	p.G107V	1.000	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors	
XPNPEP2	7512	genome.wustl.edu	37	X	128887190	128887190	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	128887190	128887190	A	G	SNP	XPNPEP2	NM_003399	human	genbank	57_37b	+1	reviewed	missense	c.1073	p.N358S	1.000	superfamily_Peptidase_M24_cat_core	superfamily_SSF53092,HMMPfam_Creatinase_N,superfamily_Peptidase_M24_cat_core,HMMPfam_Peptidase_M24,PatternScan_PROLINE_PEPTIDASE	-	no_errors	
ZC3H3	23144	genome.wustl.edu	37	8	144620342	144620342	+	Missense_Mutation	SNP	T	T	C	rs1318196	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144620342	144620342	T	C	SNP	ZC3H3	NM_015117	human	genbank	57_37b	-1	validated	missense	c.1195	p.S399G	0.210	NULL	superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356	-		
ZNF354B	117608	genome.wustl.edu	37	5	178310408	178310408	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0H0-01	TCGA-BH-A0H0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178310408	178310408	A	C	SNP	ZNF354B	NM_058230	human	genbank	57_37b	+1	validated	missense	c.955	p.I319L	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
