Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ANAPC5	51433	genome.wustl.edu	37	12	121756176	121756176	+	Silent	SNP	G	G	A	rs114544541	by1000genomes	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121756176	121756176	G	A	SNP	ANAPC5	NM_016237	human	genbank	57_37b	-1	reviewed	silent	c.1797	p.I599	0.942	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMSmart_SM00028	-		
ANXA11	311	genome.wustl.edu	37	10	81923292	81923292	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	81923292	81923292	G	C	SNP	ANXA11	NM_001157	human	genbank	57_37b	-1	reviewed	missense	c.1027	p.Q343E	1.000	superfamily_Annexin	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335	-	no_errors	
AP4M1	9179	genome.wustl.edu	37	7	99702544	99702547	+	Frame_Shift_Del	DEL	CTTC	CTTC	-	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	CTTC	CTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99702544	99702547	CTTC	-	DEL	AP4M1	NM_004722	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.654_657	p.P221fs	1.000:1.000:1.000:1.000	HMMPfam_Adap_comp_sub,superfamily_AP50	PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Clat_adaptor_s,superfamily_Longin_like,HMMPfam_Adap_comp_sub,superfamily_AP50,PatternScan_CLAT_ADAPTOR_M_2	(deletion:cds_exon[99702497,99702563])	no_errors	
APOA1	335	genome.wustl.edu	37	11	116706641	116706641	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	116706641	116706641	C	T	SNP	APOA1	NM_000039	human	genbank	57_37b	-1	reviewed	silent	c.687	p.E229	1.000	HMMPfam_Apolipoprotein,superfamily_SSF47162	superfamily_SSF47162,HMMPfam_Apolipoprotein	-	no_errors	
ARSE	415	genome.wustl.edu	37	X	2856150	2856150	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	2856150	2856150	C	T	SNP	ARSE	NM_000047	human	genbank	57_37b	-1	reviewed	silent	c.1275	p.E425	0.001	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors	
ATPAF1	64756	genome.wustl.edu	37	1	47130954	47130954	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	47130954	47130954	C	T	SNP	ATPAF1	NM_022745	human	genbank	57_37b	-1	reviewed	missense	c.349	p.D117N	1.000	HMMPfam_ATP11	HMMPfam_ATP11	-	no_errors	
BEND2	139105	genome.wustl.edu	37	X	18195777	18195777	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18195777	18195777	G	A	SNP	BEND2	NM_153346	human	genbank	57_37b	-1	validated	silent	c.1542	p.F514	0.998	HMMPfam_BEN	HMMPfam_BEN	-	no_errors	
C4A	720	genome.wustl.edu	37	6	31962113	31962113	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31962113	31962113	G	C	SNP	C4A	NM_007293	human	genbank	57_37b	+1	reviewed	missense	c.2544	p.Q848H	1.000	HMMPfam_A2M	HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylatoxin,HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terp_cyc_toroid,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_AM_receptor_bind,HMMPfam_A2M_recep,HMMSmart_C345C,HMMPfam_NTR	-	no_errors	
C8orf73	642475	genome.wustl.edu	37	8	144652216	144652216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144652216	144652216	C	T	SNP	C8orf73	NM_001100878	human	genbank	57_37b	-1	validated	missense	c.1063	p.D355N	0.988	NULL	superfamily_ARM-type_fold	-	no_errors	
CDH1	999	genome.wustl.edu	37	16	68855935	68855936	+	Frame_Shift_Ins	INS	-	-	CTGC	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68855935	68855936	-	CTGC	INS	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1743_1744	p.L582fs	0.393:0.403	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CEACAM3	1084	genome.wustl.edu	37	19	42301853	42301853	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42301853	42301853	G	A	SNP	CEACAM3	NM_001815	human	genbank	57_37b	+1	reviewed	missense	c.397	p.E133K	0.000	HMMPfam_V-set,superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors	
CES3	23491	genome.wustl.edu	37	16	67006796	67006796	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67006796	67006796	C	T	SNP	CES3	NM_024922	human	genbank	57_37b	+1	validated	silent	c.1560	p.F520	0.000	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_1	-	no_errors	
CLIP2	7461	genome.wustl.edu	37	7	73790952	73790952	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73790952	73790952	G	C	SNP	CLIP2	NM_003388	human	genbank	57_37b	+1	reviewed	missense	c.2221	p.E741Q	0.998	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors	
CNTLN	54875	genome.wustl.edu	37	9	17466866	17466866	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	17466866	17466866	G	C	SNP	CNTLN	NM_017738	human	genbank	57_37b	+1	validated	missense	c.3832	p.E1278Q	0.988	NULL	superfamily_Prefoldin	-	no_errors	
CNTNAP5	129684	genome.wustl.edu	37	2	125281897	125281897	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	125281897	125281897	G	A	SNP	CNTNAP5	NM_130773	human	genbank	57_37b	+1	reviewed	missense	c.1342	p.G448S	1.000	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2	PatternScan_FA58C_1,PatternScan_FIBRIN_AG_C_DOMAIN,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,superfamily_Fibrinogen_a/b/g_C	-	no_errors	
COL2A1	1280	genome.wustl.edu	37	12	48381467	48381467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48381467	48381467	C	T	SNP	COL2A1	NM_001844	human	genbank	57_37b	-1	reviewed	missense	c.1148	p.R383H	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors	
CUL4B	8450	genome.wustl.edu	37	X	119691821	119691821	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119691821	119691821	C	A	SNP	CUL4B	NM_003588	human	genbank	57_37b	-1	reviewed	missense	c.684	p.Q228H	1.000	superfamily_Cullin repeat,HMMPfam_Cullin	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors	
ENSG00000237144	0	genome.wustl.edu	37	19	19906732	19906732	+	RNA	SNP	A	A	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19906732	19906732	A	C	SNP	ENSG00000237144	ENST00000499863	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	
ENSG00000245549	0	genome.wustl.edu	37	1	16950889	16950889	+	RNA	SNP	G	G	A	rs12045375	byCluster	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950889	16950889	G	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.470	-	-	-		
ERO1LB	56605	genome.wustl.edu	37	1	236385305	236385305	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236385305	236385305	T	A	SNP	ERO1LB	NM_019891	human	genbank	57_37b	-1	validated	missense	c.1128	p.E376D	1.000	superfamily_ERO1,HMMPfam_ERO1	superfamily_ERO1,HMMPfam_ERO1	-	no_errors	
EXOSC10	5394	genome.wustl.edu	37	1	11147520	11147520	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11147520	11147520	G	A	SNP	EXOSC10	NM_001001998	human	genbank	57_37b	-1	validated	silent	c.1074	p.D358	1.000	HMMPfam_3_5_exonuc,HMMSmart_SM00474,superfamily_Ribonuclease H-like	HMMPfam_PMC2NT,HMMPfam_3_5_exonuc,HMMSmart_SM00474,superfamily_Ribonuclease H-like,HMMSmart_SM00341,HMMPfam_HRDC	-	no_errors	
FAM131B	9715	genome.wustl.edu	37	7	143057212	143057212	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	143057212	143057212	C	T	SNP	FAM131B	NM_001031690	human	genbank	57_37b	-1	validated	missense	c.59	p.G20D	1.000	NULL	NULL	-	no_errors	
FLNC	2318	genome.wustl.edu	37	7	128490064	128490064	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128490064	128490064	C	A	SNP	FLNC	NM_001458	human	genbank	57_37b	+1	reviewed	missense	c.5234	p.S1745Y	0.025	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors	
GDF3	9573	genome.wustl.edu	37	12	7843251	7843251	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7843251	7843251	C	T	SNP	GDF3	NM_020634	human	genbank	57_37b	-1	reviewed	silent	c.318	p.Q106	0.963	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors	
GPR97	222487	genome.wustl.edu	37	16	57713121	57713121	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57713121	57713121	C	T	SNP	GPR97	NM_170776	human	genbank	57_37b	+1	validated	silent	c.525	p.G175	0.000	NULL	PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors	
GRK4	2868	genome.wustl.edu	37	4	3040213	3040213	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3040213	3040213	C	T	SNP	GRK4	NM_182982	human	genbank	57_37b	+1	reviewed	silent	c.1656	p.G552	1.000	NULL	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133	-	no_errors	
GTF2IRD2	84163	genome.wustl.edu	37	7	74212296	74212296	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	74212296	74212296	G	A	SNP	GTF2IRD2	NM_173537	human	genbank	57_37b	-1	validated	nonsense	c.1555	p.Q519*	0.000	NULL	HMMPfam_GTF2I	-	no_errors	
H2BFM	286436	genome.wustl.edu	37	X	103268309	103268309	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103268309	103268309	C	T	SNP	H2BFM	XM_001723437	human	genbank	57_37b	+1	model	missense	c.41	p.A14V	0.000	NULL	PatternScan_HISTONE_H2B,superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone	-	no_errors	
HMGCLL1	54511	genome.wustl.edu	37	6	55360322	55360322	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	55360322	55360322	T	C	SNP	HMGCLL1	NM_019036	human	genbank	57_37b	-1	validated	silent	c.780	p.K260	0.002	superfamily_Aldolase,HMMPfam_HMGL-like	superfamily_Aldolase,HMMPfam_HMGL-like	-	no_errors	
INPP5D	3635	genome.wustl.edu	37	2	234094557	234094557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234094557	234094557	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	57_37b	+1	known	missense	c.2344	p.E782K	0.991	NULL	HMMSmart_SM00252,HMMPfam_SH2,superfamily_SH2 domain,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos	-	no_errors	
KIF5A	3798	genome.wustl.edu	37	12	57944160	57944160	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57944160	57944160	G	A	SNP	KIF5A	NM_004984	human	genbank	57_37b	+1	reviewed	missense	c.106	p.G36R	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_Prefoldin	-	no_errors	
KIFC1	3833	genome.wustl.edu	37	6	33371820	33371820	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33371820	33371820	G	C	SNP	KIFC1	NM_002263	human	genbank	57_37b	+1	validated	missense	c.670	p.E224Q	1.000	NULL	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
KRT72	140807	genome.wustl.edu	37	12	52981502	52981502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52981502	52981502	C	T	SNP	KRT72	NM_080747	human	genbank	57_37b	-1	reviewed	missense	c.1223	p.R408H	0.995	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	
LRIT2	340745	genome.wustl.edu	37	10	85984684	85984684	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	85984684	85984684	C	A	SNP	LRIT2	NM_001017924	human	genbank	57_37b	-1	validated	silent	c.297	p.L99	1.000	superfamily_SSF52058,HMMPfam_LRR_1	HMMPfam_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors	
MTMR11	10903	genome.wustl.edu	37	1	149901660	149901660	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149901660	149901660	G	C	SNP	MTMR11	NM_181873	human	genbank	57_37b	-1	validated	missense	c.1580	p.S527C	0.993	superfamily_SSF52799	superfamily_SSF50729,superfamily_SSF52799,HMMPfam_Myotub-related	-	no_errors	
NEB	4703	genome.wustl.edu	37	2	152384078	152384078	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152384078	152384078	C	T	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	missense	c.16654	p.E5552K	1.000	HMMSmart_SM00227	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
NF1	4763	genome.wustl.edu	37	17	29562657	29562660	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	TGTT	TGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29562657	29562660	TGTT	-	DEL	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3737_3740	p.F1247fs	1.000:0.780:1.000:1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	(deletion:cds_exon[29562629,29562790])	no_errors	
NLRC4	58484	genome.wustl.edu	37	2	32476071	32476071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32476071	32476071	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	57_37b	-1	known	missense	c.862	p.R288W	0.614	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like	-	no_errors	
OR2G3	81469	genome.wustl.edu	37	1	247769804	247769804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247769804	247769804	C	T	SNP	OR2G3	NM_001001914	human	genbank	57_37b	+1	provisional	missense	c.917	p.S306L	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
P2RY10	27334	genome.wustl.edu	37	X	78216027	78216027	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	78216027	78216027	C	T	SNP	P2RY10	NM_014499	human	genbank	57_37b	+1	reviewed	missense	c.10	p.L4F	0.122	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PAGE1	8712	genome.wustl.edu	37	X	49459371	49459371	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49459371	49459371	C	G	SNP	PAGE1	NM_003785	human	genbank	57_37b	-1	reviewed	missense	c.3	p.M1I	0.006	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A18F-01	TCGA-BH-A18F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936094	178936094	C	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1636	p.Q546K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
POLR1B	84172	genome.wustl.edu	37	2	113308539	113308539	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113308539	113308539	G	A	SNP	POLR1B	NM_019014	human	genbank	57_37b	+1	validated	missense	c.722	p.R241Q	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpa2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors	
POLR2G	5436	genome.wustl.edu	37	11	62533187	62533187	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62533187	62533187	G	A	SNP	POLR2G	NM_002696	human	genbank	57_37b	+1	reviewed	silent	c.462	p.K154	1.000	HMMPfam_S1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316	superfamily_N-terminal heterodimerisation domain of RBP4 (RpoE),HMMPfam_RNA_pol_Rpb7_N,HMMPfam_S1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316	-	no_errors	
PPP3CB	5532	genome.wustl.edu	37	10	75231327	75231327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75231327	75231327	C	T	SNP	PPP3CB	NM_001142353	human	genbank	57_37b	-1	validated	missense	c.568	p.A190T	1.000	superfamily_SSF56300,HMMSmart_PP2Ac,HMMPfam_Metallophos	superfamily_SSF56300,HMMSmart_PP2Ac,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors	
PRRX1	5396	genome.wustl.edu	37	1	170688909	170688909	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	170688909	170688909	G	A	SNP	PRRX1	NM_022716	human	genbank	57_37b	+1	reviewed	missense	c.284	p.R95Q	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors	
RORC	6097	genome.wustl.edu	37	1	151787136	151787136	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151787136	151787136	C	T	SNP	RORC	NM_005060	human	genbank	57_37b	-1	reviewed	missense	c.847	p.E283K	1.000	superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
SCN4B	6330	genome.wustl.edu	37	11	118004688	118004688	+	RNA	SNP	A	G	G	rs3741315	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A18F-01	TCGA-BH-A18F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118004688	118004688	A	G	SNP	SCN4B	NR_024527	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.000	-	-	-		
SCN5A	6331	genome.wustl.edu	37	3	38593036	38593036	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38593036	38593036	C	T	SNP	SCN5A	NM_001099404	human	genbank	57_37b	-1	reviewed	silent	c.4827	p.S1609	0.210	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors	
SEC31A	22872	genome.wustl.edu	37	4	83763540	83763541	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	83763540	83763541	-	T	INS	SEC31A	NM_001077207	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.2721_2720	p.Y907fs	1.000:1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
SOCS6	9306	genome.wustl.edu	37	18	67992128	67992128	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	67992128	67992128	G	T	SNP	SOCS6	NM_004232	human	genbank	57_37b	+1	reviewed	missense	c.224	p.G75V	1.000	NULL	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,HMMSmart_SOCS,HMMPfam_SOCS_box	-	no_errors	
TCERG1L	256536	genome.wustl.edu	37	10	133106511	133106511	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	133106511	133106511	C	T	SNP	TCERG1L	NM_174937	human	genbank	57_37b	-1	validated	silent	c.633	p.P211	0.275	NULL	PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,superfamily_FF,HMMSmart_FF,HMMPfam_FF	-	no_errors	
TRPM2	7226	genome.wustl.edu	37	21	45826592	45826592	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45826592	45826592	G	C	SNP	TRPM2	NM_003307	human	genbank	57_37b	+1	reviewed	missense	c.2906	p.G969A	1.000	HMMPfam_Ion_trans	HMMPfam_Ion_trans,PatternScan_CHITINASE_18,superfamily_Nudix	-	no_errors	
TSPAN11	441631	genome.wustl.edu	37	12	31136068	31136068	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	31136068	31136068	G	A	SNP	TSPAN11	NM_001080509	human	genbank	57_37b	+1	validated	missense	c.685	p.G229R	1.000	HMMPfam_Tetraspannin	PatternScan_TM4_1,HMMPfam_Tetraspannin,superfamily_Tetraspanin	-	no_errors	
USP47	55031	genome.wustl.edu	37	11	11977640	11977640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	11977640	11977640	G	A	SNP	USP47	NM_017944	human	genbank	57_37b	+1	validated	missense	c.3782	p.R1261H	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VPS13B	157680	genome.wustl.edu	37	8	100479736	100479736	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	100479736	100479736	T	C	SNP	VPS13B	NM_017890	human	genbank	57_37b	+1	reviewed	silent	c.3540	p.G1180	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors	
XPO1	7514	genome.wustl.edu	37	2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61719472	61719472	C	T	SNP	XPO1	NM_003400	human	genbank	57_37b	-1	reviewed	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1,HMMPfam_CRM1_C	-	no_errors	
ZCCHC16	340595	genome.wustl.edu	37	X	111698859	111698859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	111698859	111698859	G	A	SNP	ZCCHC16	NM_001004308	human	genbank	57_37b	+1	validated	silent	c.903	p.P301	0.795	NULL	HMMSmart_ZnF_C2HC	-	no_errors	
ZFP64	55734	genome.wustl.edu	37	20	50701381	50701381	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	50701381	50701381	C	T	SNP	ZFP64	NM_199427	human	genbank	57_37b	-1	validated	silent	c.1653	p.K551	0.148	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF257	113835	genome.wustl.edu	37	19	22271888	22271888	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18F-01	TCGA-BH-A18F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22271888	22271888	C	A	SNP	ZNF257	NM_033468	human	genbank	57_37b	+1	provisional	missense	c.1336	p.L446I	0.018	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors	
