Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AFF2	2334	genome.wustl.edu	37	X	148037578	148037578	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	148037578	148037578	G	T	SNP	AFF2	NM_002025	human	genbank	57_37b	+1	reviewed	missense	c.2003	p.R668I	0.997	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	
ALG13	55849	genome.wustl.edu	37	X	110987998	110987998	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	110987998	110987998	C	A	SNP	ALG13	ENST00000394780	human	ensembl	57_37b	+1	known	missense	c.2798	p.P933H	0.001	NULL	superfamily_SSF53756,HMMPfam_Glyco_tran_28_C,superfamily_SSF54001,HMMPfam_OTU,superfamily_SSF63748	-	no_errors	
ASCC2	84164	genome.wustl.edu	37	22	30189408	30189408	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30189408	30189408	G	A	SNP	ASCC2	NM_032204	human	genbank	57_37b	-1	provisional	silent	c.1860	p.Y620	0.986	NULL	HMMPfam_CUE,HMMSmart_SM00546	-	no_errors	
CKAP2	26586	genome.wustl.edu	37	13	53048072	53048072	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	53048072	53048072	T	G	SNP	CKAP2	NM_001098525	human	genbank	57_37b	+1	validated	missense	c.1658	p.L553R	0.000	NULL	NULL	-	no_errors	
CNTN1	1272	genome.wustl.edu	37	12	41316230	41316230	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	41316230	41316230	T	A	SNP	CNTN1	NM_001843	human	genbank	57_37b	+1	reviewed	missense	c.400	p.Y134N	1.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,PatternScan_N6_MTASE,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
CORO1A	11151	genome.wustl.edu	37	16	30198938	30198938	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30198938	30198938	G	A	SNP	CORO1A	ENST00000421578	human	ensembl	57_37b	+1	known	missense	c.404	p.R135H	0.000	NULL	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors	
DMWD	1762	genome.wustl.edu	37	19	46294321	46294321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46294321	46294321	C	T	SNP	DMWD	NM_004943	human	genbank	57_37b	-1	validated	missense	c.466	p.D156N	1.000	NULL	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors	
ENSG00000229113	0	genome.wustl.edu	37	19	42027776	42027776	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42027776	42027776	C	T	SNP	ENSG00000229113	ENST00000439847	human	ensembl	57_37b	-1	known	missense	c.508	p.A170T	0.889	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors	
FBXL5	26234	genome.wustl.edu	37	4	15627295	15627295	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	15627295	15627295	G	T	SNP	FBXL5	NM_012161	human	genbank	57_37b	-1	reviewed	missense	c.1430	p.P477H	1.000	superfamily_RNI-like	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,superfamily_RNI-like,HMMSmart_SM00367,HMMPfam_LRR_1	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115810	8115829	+	Frame_Shift_Del	DEL	CCCAAGAACAGCTCGTTTAA	CCCAAGAACAGCTCGTTTAA	-	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	CCCAAGAACAGCTCGTTTAA	CCCAAGAACAGCTCGTTTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115810	8115829	CCCAAGAACAGCTCGTTTAA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1159_1178	p.K388fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:0.952:1.000:1.000:0.998:1.000:1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	(deletion:cds_exon[8115702,8115986])	no_errors	
LOC653513	653513	genome.wustl.edu	37	1	144679890	144679891	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	144679890	144679891	-	A	INS	LOC653513	XM_927826	human	genbank	57_37b	-1	model	splice_site_ins	c.101+2_101+1	e2+2	1.000:1.000	-	-	-	no_errors	
LOC728683	728683	genome.wustl.edu	37	9	68371770	68371770	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	68371770	68371770	G	A	SNP	LOC728683	XM_001128151	human	genbank	57_37b	-1	model	silent	c.660	p.D220	1.000	HMMPfam_7tm_1	HMMPfam_7tm_1	-	no_errors	
MBD4	8930	genome.wustl.edu	37	3	129152964	129152964	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129152964	129152964	C	T	SNP	MBD4	NM_003925	human	genbank	57_37b	-1	reviewed	missense	c.1217	p.R406Q	1.000	NULL	superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-glycosylase,HMMPfam_HhH-GPD	-	no_errors	
MYB	4602	genome.wustl.edu	37	6	135511361	135511361	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	135511361	135511361	C	T	SNP	MYB	NM_001130173	human	genbank	57_37b	+1	reviewed	missense	c.403	p.H135Y	1.000	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Cmyb_C	-	no_errors	
PDE4C	5143	genome.wustl.edu	37	19	18333013	18333013	+	Silent	SNP	C	C	G	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18333013	18333013	C	G	SNP	PDE4C	NM_000923	human	genbank	57_37b	-1	validated	silent	c.363	p.L121	0.998	NULL	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
PRSS37	136242	genome.wustl.edu	37	7	141537798	141537798	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141537798	141537798	C	A	SNP	PRSS37	NM_001008270	human	genbank	57_37b	-1	validated	missense	c.292	p.D98Y	1.000	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,HMMPfam_Trypsin	PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,HMMPfam_Trypsin	-	no_errors	
PSMB6	5694	genome.wustl.edu	37	17	4700075	4700075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4700075	4700075	C	T	SNP	PSMB6	NM_002798	human	genbank	57_37b	+1	reviewed	missense	c.155	p.S52F	1.000	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B	-	no_errors	
RIMBP2	23504	genome.wustl.edu	37	12	130912757	130912757	+	Missense_Mutation	SNP	C	C	A	rs2277356	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130912757	130912757	C	A	SNP	RIMBP2	NM_015347	human	genbank	57_37b	-1	validated	missense	c.2328	p.R776S	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	-		
RMND1	55005	genome.wustl.edu	37	6	151743699	151743699	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151743699	151743699	C	A	SNP	RMND1	NM_017909	human	genbank	57_37b	-1	validated	nonsense	c.979	p.E327*	1.000	HMMPfam_DUF155	HMMPfam_DUF155	-	no_errors	
RREB1	6239	genome.wustl.edu	37	6	7189439	7189439	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7189439	7189439	A	G	SNP	RREB1	NM_001003699	human	genbank	57_37b	+1	reviewed	silent	c.309	p.G103	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
SULF1	23213	genome.wustl.edu	37	8	70541787	70541787	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	70541787	70541787	C	A	SNP	SULF1	NM_001128204	human	genbank	57_37b	+1	validated	missense	c.2157	p.N719K	0.751	superfamily_Alkaline_phosphatase_core	PatternScan_SULFATASE_2,HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core,PatternScan_SULFATASE_1	-	no_errors	
SULT1A2	6799	genome.wustl.edu	37	16	28603690	28603690	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28603690	28603690	C	T	SNP	SULT1A2	NM_001054	human	genbank	57_37b	-1	reviewed	missense	c.669	p.M223I	0.002	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors	
TEAD4	7004	genome.wustl.edu	37	12	3104024	3104024	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	3104024	3104024	T	G	SNP	TEAD4	NM_003213	human	genbank	57_37b	+1	reviewed	missense	c.92	p.L31R	0.996	HMMPfam_TEA	HMMPfam_TEA,HMMSmart_TEA,PatternScan_TEA_1	-	no_errors	
TRPC4AP	26133	genome.wustl.edu	37	20	33591392	33591392	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A133-01	TCGA-C8-A133-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33591392	33591392	G	A	SNP	TRPC4AP	NM_015638	human	genbank	57_37b	-1	validated	silent	c.2077	p.L693	1.000	NULL	NULL	-	no_errors	
