Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AGPHD1	123688	genome.wustl.edu	37	15	78825858	78825858	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78825858	78825858	C	G	SNP	AGPHD1	NM_001013619	human	genbank	57_37b	+1	validated	missense	c.968	p.S323C	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_APH	-	no_errors	
ASH1L	55870	genome.wustl.edu	37	1	155311856	155311856	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155311856	155311856	G	A	SNP	ASH1L	NM_018489	human	genbank	57_37b	-1	reviewed	silent	c.8331	p.I2777	1.000	HMMPfam_BAH,HMMSmart_SM00439	HMMSmart_SM00384,HMMPfam_AT_hook,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_BAH,HMMSmart_SM00439	-	no_errors	
ATP6V1B2	526	genome.wustl.edu	37	8	20067922	20067922	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	20067922	20067922	C	G	SNP	ATP6V1B2	NM_001693	human	genbank	57_37b	+1	reviewed	silent	c.357	p.L119	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ATP-synt_ab_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ATP-synt_ab,PatternScan_ATPASE_ALPHA_BETA,HMMPfam_ATP-synt_ab_C	-	no_errors	
C1orf124	83932	genome.wustl.edu	37	1	231474280	231474280	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	231474280	231474280	C	T	SNP	C1orf124	NM_032018	human	genbank	57_37b	+1	validated	nonsense	c.151	p.Q51*	1.000	HMMPfam_SprT-like,HMMSmart_SM00731	HMMPfam_SprT-like,HMMSmart_SM00731,HMMSmart_SM00734	-	no_errors	
C7orf46	340277	genome.wustl.edu	37	7	23729011	23729011	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	23729011	23729011	C	G	SNP	C7orf46	NM_199136	human	genbank	57_37b	+1	validated	silent	c.363	p.P121	1.000	NULL	NULL	-	no_errors	
C9orf41	138199	genome.wustl.edu	37	9	77631273	77631273	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	77631273	77631273	T	C	SNP	C9orf41	NM_152420	human	genbank	57_37b	-1	predicted	silent	c.501	p.R167	1.000	HMMPfam_N2227,superfamily_SSF53335	HMMPfam_N2227,superfamily_SSF53335	-	no_errors	
CACNA1E	777	genome.wustl.edu	37	1	181767528	181767528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	181767528	181767528	G	A	SNP	CACNA1E	NM_000721	human	genbank	57_37b	+1	reviewed	missense	c.6371	p.R2124Q	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CCDC34	91057	genome.wustl.edu	37	11	27379074	27379074	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	27379074	27379074	G	C	SNP	CCDC34	NM_030771	human	genbank	57_37b	-1	validated	nonsense	c.374	p.S125*	0.001	NULL	NULL	-	no_errors	
CD101	0	genome.wustl.edu	37	1	117568312	117568312	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117568312	117568312	G	C	SNP	CD101	NM_004258	human	genbank	57_37b	+1	validated	missense	c.2610	p.L870F	0.992	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors	
CD40	958	genome.wustl.edu	37	20	44750513	44750513	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44750513	44750513	C	T	SNP	CD40	NM_001250	human	genbank	57_37b	+1	reviewed	nonsense	c.106	p.Q36*	0.005	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2	-	no_errors	
CNTNAP1	8506	genome.wustl.edu	37	17	40849571	40849571	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40849571	40849571	G	C	SNP	CNTNAP1	NM_003632	human	genbank	57_37b	+1	reviewed	splice_site	c.3569-1	e22-1	1.000	-	-	-	no_errors	
DUSP10	11221	genome.wustl.edu	37	1	221913018	221913018	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	221913018	221913018	G	C	SNP	DUSP10	NM_007207	human	genbank	57_37b	-1	reviewed	silent	c.69	p.L23	1.000	NULL	superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
EDEM3	80267	genome.wustl.edu	37	1	184686738	184686738	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	184686738	184686738	C	G	SNP	EDEM3	NM_025191	human	genbank	57_37b	-1	validated	missense	c.1181	p.R394T	1.000	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47,superfamily_SSF52025,HMMPfam_PA,PatternScan_ER_TARGET	-	no_errors	
ENSG00000247770	0	genome.wustl.edu	37	1	11188423	11188423	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11188423	11188423	C	G	SNP	ENSG00000247770	ENST00000499978	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.002	-	-	-	no_errors	
EPB41L1	2036	genome.wustl.edu	37	20	34778680	34778680	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34778680	34778680	T	G	SNP	EPB41L1	NM_012156	human	genbank	57_37b	+1	reviewed	missense	c.1261	p.S421A	0.998	superfamily_PH domain-like,HMMPfam_FA	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors	
FAM5C	339479	genome.wustl.edu	37	1	190195266	190195266	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	190195266	190195266	G	A	SNP	FAM5C	NM_199051	human	genbank	57_37b	-1	provisional	missense	c.907	p.L303F	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors	
FRY	10129	genome.wustl.edu	37	13	32811934	32811934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	32811934	32811934	G	A	SNP	FRY	NM_023037	human	genbank	57_37b	+1	validated	missense	c.6229	p.D2077N	1.000	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors	
FSHR	2492	genome.wustl.edu	37	2	49217745	49217745	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	49217745	49217745	G	A	SNP	FSHR	NM_000145	human	genbank	57_37b	-1	reviewed	missense	c.406	p.P136S	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GRXCR1	389207	genome.wustl.edu	37	4	42964964	42964964	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	42964964	42964964	G	A	SNP	GRXCR1	NM_001080476	human	genbank	57_37b	+1	inferred	missense	c.440	p.R147H	1.000	superfamily_Thiordxn-like_fd,HMMPfam_Glutaredoxin	PatternScan_GLUTAREDOXIN_1,superfamily_Thiordxn-like_fd,HMMPfam_Glutaredoxin,superfamily_HSP_DnaJ_cys-rich	-	no_errors	
HEATR1	55127	genome.wustl.edu	37	1	236746159	236746159	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236746159	236746159	C	G	SNP	HEATR1	NM_018072	human	genbank	57_37b	-1	validated	missense	c.2439	p.W813C	1.000	NULL	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT	-	no_errors	
HMOX2	3163	genome.wustl.edu	37	16	4559694	4559694	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4559694	4559694	C	G	SNP	HMOX2	NM_001127204	human	genbank	57_37b	+1	reviewed	silent	c.888	p.L296	0.990	NULL	superfamily_Heme oxygenase-like,HMMPfam_Heme_oxygenase,PatternScan_HEME_OXYGENASE	-	no_errors	
INTS5	80789	genome.wustl.edu	37	11	62414645	62414645	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62414645	62414645	G	T	SNP	INTS5	NM_030628	human	genbank	57_37b	-1	provisional	missense	c.2907	p.F969L	1.000	NULL	NULL	-	no_errors	
INTS5	80789	genome.wustl.edu	37	11	62415402	62415402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62415402	62415402	G	A	SNP	INTS5	NM_030628	human	genbank	57_37b	-1	provisional	missense	c.2150	p.S717L	0.034	NULL	NULL	-	no_errors	
INTS5	80789	genome.wustl.edu	37	11	62417233	62417233	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62417233	62417233	G	C	SNP	INTS5	NM_030628	human	genbank	57_37b	-1	provisional	missense	c.319	p.P107A	0.995	NULL	NULL	-	no_errors	
INTU	27152	genome.wustl.edu	37	4	128564824	128564824	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	128564824	128564824	G	C	SNP	INTU	NM_015693	human	genbank	57_37b	+1	provisional	missense	c.295	p.D99H	0.998	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors	
KCTD19	146212	genome.wustl.edu	37	16	67325298	67325298	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67325298	67325298	G	T	SNP	KCTD19	NM_001100915	human	genbank	57_37b	-1	provisional	missense	c.2479	p.L827M	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_K_tetra	-	no_errors	
LAMA1	284217	genome.wustl.edu	37	18	7032992	7032992	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	7032992	7032992	G	C	SNP	LAMA1	NM_005559	human	genbank	57_37b	-1	validated	silent	c.2154	p.T718	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00180,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors	
LASS2	29956	genome.wustl.edu	37	1	150939642	150939642	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150939642	150939642	T	C	SNP	LASS2	NM_022075	human	genbank	57_37b	-1	reviewed	missense	c.649	p.I217V	1.000	HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	superfamily_Homeodomain-like,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	-	no_errors	
LILRA2	11027	genome.wustl.edu	37	19	55086977	55086977	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55086977	55086977	G	A	SNP	LILRA2	NM_001130917	human	genbank	57_37b	+1	validated	missense	c.910	p.E304K	0.003	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
LOC728064	728064	genome.wustl.edu	37	10	43199466	43199466	+	RNA	SNP	A	A	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43199466	43199466	A	T	SNP	LOC728064	XR_015196	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.997	-	-	-	no_errors	
LPIN2	9663	genome.wustl.edu	37	18	2960806	2960806	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	2960806	2960806	C	T	SNP	LPIN2	NM_014646	human	genbank	57_37b	-1	reviewed	silent	c.33	p.V11	1.000	HMMPfam_Lipin_N	HMMPfam_Lipin_N,superfamily_SSF56784,HMMPfam_LNS2,HMMSmart_LNS2	-	no_errors	
NAALADL1	10004	genome.wustl.edu	37	11	64813656	64813656	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64813656	64813656	C	T	SNP	NAALADL1	ENST00000453486	human	ensembl	57_37b	-1	known	missense	c.1860	p.M620I	0.018	NULL	PatternScan_PROTEIN_KINASE_ATP,superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28	-	no_errors	
NDFIP1	80762	genome.wustl.edu	37	5	141511786	141511786	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141511786	141511786	A	T	SNP	NDFIP1	NM_030571	human	genbank	57_37b	+1	reviewed	missense	c.161	p.D54V	1.000	HMMPfam_DUF2370	HMMPfam_DUF2370	-	no_errors	
PFKFB3	5209	genome.wustl.edu	37	10	6262763	6262763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	6262763	6262763	G	A	SNP	PFKFB3	NM_004566	human	genbank	57_37b	+1	validated	missense	c.766	p.E256K	1.000	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like,PatternScan_PG_MUTASE	HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like,PatternScan_PG_MUTASE	-	no_errors	
PHC1	1911	genome.wustl.edu	37	12	9070338	9070338	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9070338	9070338	C	G	SNP	PHC1	NM_004426	human	genbank	57_37b	+1	reviewed	missense	c.65	p.S22C	1.000	NULL	HMMPfam_zf-FCS,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	A	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	3	178917478	178917478	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.353	p.G118D	1.000	superfamily_SSF54236	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PLCE1	51196	genome.wustl.edu	37	10	95930961	95930966	+	In_Frame_Del	DEL	CCAATT	CCAATT	-	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	CCAATT	CCAATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95930961	95930966	CCAATT	-	DEL	PLCE1	NM_016341	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1517_1522	p.SN508in_frame_del	1.000:0.997:1.000:0.999:0.999:1.000	superfamily_Ras GEF	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMSmart_SM00149,HMMPfam_PI-PLC-Y,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RA,HMMSmart_SM00314	(deletion:cds_exon[95930937,95931253])	no_errors	
POLR3A	11128	genome.wustl.edu	37	10	79784369	79784369	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	79784369	79784369	G	C	SNP	POLR3A	NM_007055	human	genbank	57_37b	-1	validated	missense	c.583	p.Q195E	1.000	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_1	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_1,HMMSmart_RPOLA_N,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5	-	no_errors	
PTK2B	2185	genome.wustl.edu	37	8	27293815	27293815	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	27293815	27293815	C	A	SNP	PTK2B	NM_004103	human	genbank	57_37b	+1	reviewed	missense	c.1291	p.L431I	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_Focal_AT,superfamily_FAT domain of focal adhesion kinase	-	no_errors	
SFRS18	25957	genome.wustl.edu	37	6	99860583	99860583	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	99860583	99860583	A	G	SNP	SFRS18	NM_015491	human	genbank	57_37b	-1	validated	missense	c.121	p.W41R	1.000	NULL	NULL	-	no_errors	
SLAMF1	6504	genome.wustl.edu	37	1	160582299	160582299	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160582299	160582299	C	T	SNP	SLAMF1	NM_003037	human	genbank	57_37b	-1	validated	silent	c.936	p.E312	0.997	NULL	HMMPfam_SLAM	-	no_errors	
SMC1A	8243	genome.wustl.edu	37	X	53430747	53430747	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53430747	53430747	C	G	SNP	SMC1A	NM_006306	human	genbank	57_37b	-1	reviewed	missense	c.2275	p.E759Q	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors	
SNX11	29916	genome.wustl.edu	37	17	46189979	46189979	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46189979	46189979	A	G	SNP	SNX11	NM_013323	human	genbank	57_37b	+1	reviewed	missense	c.86	p.E29G	1.000	superfamily_PX,HMMPfam_PX,HMMSmart_PX	superfamily_PX,HMMPfam_PX,HMMSmart_PX	-	no_errors	
SPTB	6710	genome.wustl.edu	37	14	65263386	65263386	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65263386	65263386	C	T	SNP	SPTB	NM_001024858	human	genbank	57_37b	-1	reviewed	silent	c.1230	p.L410	1.000	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
STX17	55014	genome.wustl.edu	37	9	102677570	102677570	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	102677570	102677570	A	G	SNP	STX17	NM_017919	human	genbank	57_37b	+1	validated	missense	c.49	p.I17V	1.000	superfamily_t-snare	superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors	
SYT6	148281	genome.wustl.edu	37	1	114640500	114640500	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114640500	114640500	C	T	SNP	SYT6	NM_205848	human	genbank	57_37b	-1	validated	splice_site	c.1110-1	e5-1	1.000	-	-	-	no_errors	
TCEB3	6924	genome.wustl.edu	37	1	24086048	24086048	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24086048	24086048	A	C	SNP	TCEB3	NM_003198	human	genbank	57_37b	+1	reviewed	missense	c.2382	p.R794S	1.000	NULL	superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMPfam_TFIIS,HMMSmart_SM00509,HMMPfam_Elongin_A	-	no_errors	
TCHHL1	126637	genome.wustl.edu	37	1	152058642	152058642	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152058642	152058642	C	G	SNP	TCHHL1	NM_001008536	human	genbank	57_37b	-1	provisional	missense	c.1516	p.E506Q	0.000	NULL	PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100	-	no_errors	
TLR10	81793	genome.wustl.edu	37	4	38775802	38775802	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	38775802	38775802	T	C	SNP	TLR10	NM_001017388	human	genbank	57_37b	-1	reviewed	silent	c.1410	p.E470	0.861	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors	
TMEM87A	25963	genome.wustl.edu	37	15	42564268	42564268	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42564268	42564268	G	C	SNP	TMEM87A	NM_015497	human	genbank	57_37b	-1	validated	missense	c.198	p.F66L	1.000	NULL	HMMPfam_Lung_7-TM_R	-	no_errors	
TNKS1BP1	85456	genome.wustl.edu	37	11	57076132	57076132	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57076132	57076132	C	G	SNP	TNKS1BP1	NM_033396	human	genbank	57_37b	-1	validated	missense	c.4053	p.Q1351H	0.000	NULL	NULL	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577120	7577120	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.818	p.R273H	0.864	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TRIM58	25893	genome.wustl.edu	37	1	248028177	248028177	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248028177	248028177	G	A	SNP	TRIM58	NM_015431	human	genbank	57_37b	+1	validated	silent	c.687	p.L229	0.987	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
TXNDC11	51061	genome.wustl.edu	37	16	11782228	11782228	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11782228	11782228	C	A	SNP	TXNDC11	NM_015914	human	genbank	57_37b	-1	provisional	missense	c.1974	p.Q658H	1.000	superfamily_Thiordxn-like_fd	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	-	no_errors	
UBR1	197131	genome.wustl.edu	37	15	43244537	43244537	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43244537	43244537	C	G	SNP	UBR1	NM_174916	human	genbank	57_37b	-1	reviewed	missense	c.4945	p.E1649Q	1.000	NULL	HMMPfam_zf-UBR,HMMSmart_SM00396,superfamily_ClpS-like,HMMPfam_ClpS,PatternScan_RIBOSOMAL_S16	-	no_errors	
WNT2B	7482	genome.wustl.edu	37	1	113052034	113052034	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	113052034	113052034	G	C	SNP	WNT2B	NM_024494	human	genbank	57_37b	+1	reviewed	silent	c.150	p.L50	1.000	NULL	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors	
ZMYM2	7750	genome.wustl.edu	37	13	20641001	20641001	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	20641001	20641001	G	A	SNP	ZMYM2	NM_003453	human	genbank	57_37b	+1	validated	missense	c.3143	p.R1048K	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_TRASH	-	no_errors	
ZMYM2	7750	genome.wustl.edu	37	13	20657091	20657091	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	20657091	20657091	T	C	SNP	ZMYM2	NM_003453	human	genbank	57_37b	+1	validated	missense	c.3739	p.W1247R	0.998	NULL	HMMPfam_zf-FCS,HMMSmart_TRASH	-	no_errors	
ZNF695	57116	genome.wustl.edu	37	1	247150838	247150838	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247150838	247150838	C	A	SNP	ZNF695	NM_020394	human	genbank	57_37b	-1	validated	nonsense	c.979	p.E327*	0.022	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF785	146540	genome.wustl.edu	37	16	30596468	30596468	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A108-01	TCGA-E2-A108-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30596468	30596468	G	A	SNP	ZNF785	NM_152458	human	genbank	57_37b	-1	provisional	silent	c.309	p.F103	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
