Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABI1	10006	genome.wustl.edu	37	10	27052815	27052815	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27052815	27052815	C	A	SNP	ABI1	NM_005470	human	genbank	57_37b	-1	reviewed	missense	c.895	p.V299L	1.000	NULL	HMMPfam_Abi_HHR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
ACOX1	51	genome.wustl.edu	37	17	73956312	73956312	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73956312	73956312	C	G	SNP	ACOX1	NM_004035	human	genbank	57_37b	-1	reviewed	missense	c.414	p.Q138H	1.000	superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_M	superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_M,PatternScan_AA_TRNA_LIGASE_I,superfamily_AcylCoADH_C_like,HMMPfam_ACOX	-	no_errors	
AKAP9	10142	genome.wustl.edu	37	7	91632139	91632139	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	91632139	91632139	C	G	SNP	AKAP9	NM_005751	human	genbank	57_37b	+1	reviewed	missense	c.2908	p.H970D	0.925	NULL	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	-	no_errors	
ATG7	10533	genome.wustl.edu	37	3	11383698	11383698	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	11383698	11383698	A	G	SNP	ATG7	NM_006395	human	genbank	57_37b	+1	validated	missense	c.1070	p.K357R	0.987	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF	-	no_errors	
ATP11A	23250	genome.wustl.edu	37	13	113488902	113488902	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113488902	113488902	G	C	SNP	ATP11A	NM_032189	human	genbank	57_37b	+1	reviewed	splice_site	c.1560-1	e15-1	1.000	-	-	-	no_errors	
ATRN	8455	genome.wustl.edu	37	20	3527932	3527932	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3527932	3527932	T	A	SNP	ATRN	NM_139321	human	genbank	57_37b	+1	reviewed	missense	c.739	p.F247I	1.000	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_EGF/Laminin	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,HMMPfam_PSI,HMMSmart_SM00423,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1	-	no_errors	
BZRAP1	9256	genome.wustl.edu	37	17	56384995	56384995	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56384995	56384995	A	C	SNP	BZRAP1	NM_004758	human	genbank	57_37b	-1	validated	missense	c.4960	p.F1654V	1.000	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors	
C2orf89	129293	genome.wustl.edu	37	2	85097456	85097456	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85097456	85097456	A	C	SNP	C2orf89	NM_001080824	human	genbank	57_37b	-1	predicted	missense	c.562	p.L188V	1.000	NULL	NULL	-	no_errors	
CCDC3	83643	genome.wustl.edu	37	10	13043199	13043199	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	13043199	13043199	G	A	SNP	CCDC3	NM_031455	human	genbank	57_37b	-1	validated	silent	c.372	p.L124	1.000	NULL	NULL	-	no_errors	
CCDC69	26112	genome.wustl.edu	37	5	150566946	150566946	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150566946	150566946	C	A	SNP	CCDC69	NM_015621	human	genbank	57_37b	-1	validated	splice_site	c.393+1	e5+1	1.000	-	-	-	no_errors	
CDK5RAP1	51654	genome.wustl.edu	37	20	31961928	31961928	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31961928	31961928	G	A	SNP	CDK5RAP1	NM_016408	human	genbank	57_37b	-1	reviewed	missense	c.1198	p.R400W	1.000	superfamily_Radical SAM enzymes,HMMSmart_SM00729,HMMPfam_Radical_SAM	HMMPfam_UPF0004,superfamily_Radical SAM enzymes,HMMSmart_SM00729,PatternScan_UPF0004,HMMPfam_Radical_SAM,HMMPfam_TRAM	-	no_errors	
CEP68	23177	genome.wustl.edu	37	2	65298808	65298808	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	65298808	65298808	C	T	SNP	CEP68	NM_015147	human	genbank	57_37b	+1	validated	missense	c.578	p.P193L	0.000	NULL	superfamily_Spectrin repeat	-	no_errors	
CSMD2	114784	genome.wustl.edu	37	1	34554791	34554791	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34554791	34554791	T	C	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	missense	c.71	p.Q24R	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors	
CTSS	1520	genome.wustl.edu	37	1	150722597	150722597	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150722597	150722597	C	A	SNP	CTSS	NM_004079	human	genbank	57_37b	-1	reviewed	missense	c.678	p.K226N	0.946	superfamily_SSF54001,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1	superfamily_SSF54001,HMMPfam_Inhibitor_I29,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN	-	no_errors	
CUL5	8065	genome.wustl.edu	37	11	107965573	107965573	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	107965573	107965573	C	T	SNP	CUL5	NM_003478	human	genbank	57_37b	+1	validated	silent	c.1602	p.G534	1.000	HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors	
ENSG00000245570	0	genome.wustl.edu	37	19	10502102	10502102	+	RNA	SNP	C	C	T	rs11548939	byCluster;byFrequency;by1000genomes	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10502102	10502102	C	T	SNP	ENSG00000245570	ENST00000500204	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-		
F7	2155	genome.wustl.edu	37	13	113771885	113771885	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113771885	113771885	C	T	SNP	F7	NM_000131	human	genbank	57_37b	+1	reviewed	silent	c.780	p.N260	0.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMSmart_SM00069,superfamily_GLA-domain,HMMPfam_Gla,PatternScan_GLA_1,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,superfamily_EGF/Laminin,PatternScan_EGF_2,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
FAM108A1	81926	genome.wustl.edu	37	19	1877565	1877565	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1877565	1877565	C	A	SNP	FAM108A1	NM_031213	human	genbank	57_37b	-1	validated	missense	c.802	p.G268C	1.000	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases	PatternScan_TONB_DEPENDENT_REC_1,superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_2	-	no_errors	
FAM124A	220108	genome.wustl.edu	37	13	51854669	51854669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	51854669	51854669	G	A	SNP	FAM124A	ENST00000422903	human	ensembl	57_37b	+1	known	missense	c.38	p.R13Q	0.000	NULL	NULL	-	no_errors	
FAM171B	165215	genome.wustl.edu	37	2	187626606	187626606	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187626606	187626606	A	T	SNP	FAM171B	NM_177454	human	genbank	57_37b	+1	validated	missense	c.1537	p.R513W	0.944	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors	
FER1L5	90342	genome.wustl.edu	37	2	97357535	97357535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97357535	97357535	C	T	SNP	FER1L5	NM_001113382	human	genbank	57_37b	+1	provisional	missense	c.3130	p.P1044S	0.000	NULL	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerI,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	-	no_errors	
GANAB	23193	genome.wustl.edu	37	11	62400200	62400200	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62400200	62400200	C	G	SNP	GANAB	NM_198335	human	genbank	57_37b	-1	validated	missense	c.899	p.R300P	1.000	NULL	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2	-	no_errors	
GYG2	8908	genome.wustl.edu	37	X	2774660	2774660	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	2774660	2774660	C	G	SNP	GYG2	NM_003918	human	genbank	57_37b	+1	validated	missense	c.702	p.F234L	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	-	no_errors	
HPSE	10855	genome.wustl.edu	37	4	84234382	84234382	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	84234382	84234382	A	T	SNP	HPSE	NM_001098540	human	genbank	57_37b	-1	validated	missense	c.558	p.F186L	1.000	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_79n	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_79n	-	no_errors	
HTR5A	3361	genome.wustl.edu	37	7	154862779	154862779	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	154862779	154862779	G	T	SNP	HTR5A	NM_024012	human	genbank	57_37b	+1	reviewed	missense	c.170	p.W57L	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
IL27	246778	genome.wustl.edu	37	16	28511052	28511052	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28511052	28511052	C	G	SNP	IL27	NM_145659	human	genbank	57_37b	-1	reviewed	missense	c.652	p.V218L	0.722	NULL	NULL	-	no_errors	
KDM3B	51780	genome.wustl.edu	37	5	137771360	137771360	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	137771360	137771360	G	A	SNP	KDM3B	NM_016604	human	genbank	57_37b	+1	validated	missense	c.5257	p.A1753T	1.000	NULL	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors	
KGFLP2	654466	genome.wustl.edu	37	9	41962410	41962410	+	RNA	SNP	T	T	A	rs28474905	byCluster;byFrequency	TCGA-E2-A14N-01	TCGA-E2-A14N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	41962410	41962410	T	A	SNP	KGFLP2	NR_003670	human	genbank	57_37b	-1	validated	rna	NULL	NULL	1.000	-	-	-		
LOC732391	0	genome.wustl.edu	37	17	15469101	15469101	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15469101	15469101	G	A	SNP	LOC732391	XM_001722159	human	genbank	57_37b	-1	model	missense	c.478	p.R160W	0.001	NULL	NULL	-	no_errors	
LPPR3	0	genome.wustl.edu	37	19	815750	815750	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	815750	815750	G	A	SNP	LPPR3	NM_024888	human	genbank	57_37b	-1	provisional	silent	c.177	p.L59	0.997	superfamily_AcPase_VanPerase	superfamily_AcPase_VanPerase,HMMPfam_PAP2,HMMSmart_acidPPc	-	no_errors	
MGAM	8972	genome.wustl.edu	37	7	141705436	141705436	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141705436	141705436	A	G	SNP	MGAM	NM_004668	human	genbank	57_37b	+1	reviewed	missense	c.106	p.K36E	0.014	NULL	HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31	-	no_errors	
MID2	11043	genome.wustl.edu	37	X	107170052	107170052	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107170052	107170052	C	G	SNP	MID2	NM_012216	human	genbank	57_37b	+1	reviewed	missense	c.1957	p.R653G	1.000	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain,HMMSmart_SM00502,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
MLLT3	4300	genome.wustl.edu	37	9	20620668	20620668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	20620668	20620668	G	A	SNP	MLLT3	NM_004529	human	genbank	57_37b	-1	validated	missense	c.178	p.P60S	1.000	HMMPfam_YEATS	HMMPfam_YEATS	-	no_errors	
MRGPRX3	117195	genome.wustl.edu	37	11	18159472	18159472	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18159472	18159472	G	T	SNP	MRGPRX3	NM_054031	human	genbank	57_37b	+1	reviewed	missense	c.723	p.R241S	0.211	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
MYO18B	84700	genome.wustl.edu	37	22	26423470	26423470	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26423470	26423470	A	T	SNP	MYO18B	NM_032608	human	genbank	57_37b	+1	reviewed	silent	c.7530	p.S2510	0.558	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors	
MYO9A	4649	genome.wustl.edu	37	15	72338876	72338876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	72338876	72338876	C	T	SNP	MYO9A	NM_006901	human	genbank	57_37b	-1	validated	missense	c.29	p.R10H	1.000	NULL	HMMPfam_RA,HMMSmart_SM00314,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
NUMBL	9253	genome.wustl.edu	37	19	41173774	41173774	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41173774	41173774	C	A	SNP	NUMBL	NM_004756	human	genbank	57_37b	-1	validated	missense	c.1429	p.V477L	1.000	NULL	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,HMMPfam_NumbF	-	no_errors	
PCMTD2	55251	genome.wustl.edu	37	20	62899355	62899355	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62899355	62899355	T	C	SNP	PCMTD2	NM_018257	human	genbank	57_37b	+1	validated	missense	c.698	p.V233A	1.000	NULL	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors	
PIP5K1A	8394	genome.wustl.edu	37	1	151209081	151209081	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151209081	151209081	C	T	SNP	PIP5K1A	NM_001135638	human	genbank	57_37b	+1	validated	silent	c.987	p.I329	1.000	superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K	superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K	-	no_errors	
PLEKHN1	84069	genome.wustl.edu	37	1	906108	906108	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	906108	906108	G	T	SNP	PLEKHN1	NM_032129	human	genbank	57_37b	+1	validated	missense	c.454	p.G152W	0.379	superfamily_SSF50729,HMMSmart_PH,HMMPfam_PH	superfamily_SSF50729,HMMSmart_PH,HMMPfam_PH	-	no_errors	
PRODH2	58510	genome.wustl.edu	37	19	36303679	36303679	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36303679	36303679	G	C	SNP	PRODH2	NM_021232	human	genbank	57_37b	-1	reviewed	missense	c.257	p.S86C	0.267	NULL	HMMPfam_Pro_dh,superfamily_SSF51730	-	no_errors	
PROX2	283571	genome.wustl.edu	37	14	75329577	75329577	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75329577	75329577	T	A	SNP	PROX2	NM_001080408	human	genbank	57_37b	-1	provisional	missense	c.961	p.T321S	0.002	NULL	HMMPfam_Prox1,superfamily_Homeodomain-like	-	no_errors	
PTCH1	5727	genome.wustl.edu	37	9	98221930	98221930	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98221930	98221930	C	G	SNP	PTCH1	NM_000264	human	genbank	57_37b	-1	reviewed	missense	c.2839	p.E947Q	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	
PTCHD3	374308	genome.wustl.edu	37	10	27700858	27700858	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27700858	27700858	C	A	SNP	PTCHD3	NM_001034842	human	genbank	57_37b	-1	validated	missense	c.1090	p.V364L	0.998	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
RANBP3	8498	genome.wustl.edu	37	19	5917932	5917932	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5917932	5917932	C	T	SNP	RANBP3	NM_007322	human	genbank	57_37b	-1	reviewed	silent	c.1533	p.L511	1.000	superfamily_PH domain-like	superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1	-	no_errors	
RIMKLA	284716	genome.wustl.edu	37	1	42875811	42875811	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	42875811	42875811	T	C	SNP	RIMKLA	NM_173642	human	genbank	57_37b	+1	validated	missense	c.638	p.M213T	1.000	superfamily_SSF56059,HMMPfam_RimK	superfamily_SSF56059,HMMPfam_RimK	-	no_errors	
RNF10	9921	genome.wustl.edu	37	12	120995476	120995476	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120995476	120995476	C	T	SNP	RNF10	NM_014868	human	genbank	57_37b	+1	reviewed	missense	c.958	p.H320Y	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
RSPH3	83861	genome.wustl.edu	37	6	159401878	159401878	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	159401878	159401878	G	C	SNP	RSPH3	NM_031924	human	genbank	57_37b	-1	validated	missense	c.1213	p.L405V	1.000	HMMPfam_Radial_spoke_3	HMMPfam_Radial_spoke_3	-	no_errors	
RTL1	388015	genome.wustl.edu	37	14	101350779	101350779	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101350779	101350779	C	T	SNP	RTL1	NM_001134888	human	genbank	57_37b	-1	reviewed	missense	c.347	p.G116E	0.000	NULL	HMMPfam_Retrotrans_gag,superfamily_Acid proteases,superfamily_DNA/RNA polymerases	-	no_errors	
SAMD9	54809	genome.wustl.edu	37	7	92733023	92733023	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	92733023	92733023	G	T	SNP	SAMD9	NM_017654	human	genbank	57_37b	-1	validated	silent	c.2388	p.L796	0.993	NULL	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
SH3GL2	6456	genome.wustl.edu	37	9	17795652	17795652	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	17795652	17795652	G	A	SNP	SH3GL2	NM_003026	human	genbank	57_37b	+1	validated	missense	c.970	p.D324N	1.000	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
SLC5A9	200010	genome.wustl.edu	37	1	48699331	48699331	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	48699331	48699331	G	A	SNP	SLC5A9	ENST00000425816	human	ensembl	57_37b	+1	known	missense	c.832	p.G278S	0.992	NULL	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors	
SPRR3	6707	genome.wustl.edu	37	1	152975898	152975898	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152975898	152975898	T	G	SNP	SPRR3	NM_001097589	human	genbank	57_37b	+1	validated	silent	c.402	p.P134	0.897	HMMPfam_Cornifin	HMMPfam_Cornifin	-	no_errors	
SSR1	6745	genome.wustl.edu	37	6	7301667	7301667	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7301667	7301667	A	G	SNP	SSR1	NM_003144	human	genbank	57_37b	-1	reviewed	missense	c.419	p.L140P	1.000	HMMPfam_TRAP_alpha	HMMPfam_TRAP_alpha	-	no_errors	
SYCP2L	221711	genome.wustl.edu	37	6	10935310	10935310	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10935310	10935310	C	A	SNP	SYCP2L	NM_001040274	human	genbank	57_37b	+1	validated	nonsense	c.1703	p.S568*	0.000	NULL	NULL	-	no_errors	
THNSL1	79896	genome.wustl.edu	37	10	25313398	25313398	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	25313398	25313398	C	T	SNP	THNSL1	NM_024838	human	genbank	57_37b	+1	validated	nonsense	c.1246	p.Q416*	1.000	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,HMMPfam_PALP	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SKI,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,HMMPfam_PALP	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578263	7578263	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.586	p.R196*	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TTC29	83894	genome.wustl.edu	37	4	147724636	147724636	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	147724636	147724636	C	G	SNP	TTC29	NM_031956	human	genbank	57_37b	-1	validated	missense	c.1303	p.G435R	0.983	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors	
UGT2A1	10941	genome.wustl.edu	37	4	70455314	70455314	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	70455314	70455314	G	T	SNP	UGT2A1	NM_006798	human	genbank	57_37b	-1	validated	missense	c.1360	p.P454T	1.000	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
XPO1	7514	genome.wustl.edu	37	2	61710129	61710129	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61710129	61710129	A	G	SNP	XPO1	NM_003400	human	genbank	57_37b	-1	reviewed	silent	c.2775	p.H925	1.000	superfamily_ARM-type_fold,HMMPfam_CRM1_C	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1,HMMPfam_CRM1_C	-	no_errors	
ZNF625	90589	genome.wustl.edu	37	19	12256170	12256170	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12256170	12256170	G	C	SNP	ZNF625	NM_145233	human	genbank	57_37b	-1	provisional	missense	c.863	p.T288S	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZRSR2	8233	genome.wustl.edu	37	X	15841195	15841206	+	In_Frame_Del	DEL	AGGGACCGCAGC	AGGGACCGCAGC	-	novel	unknown	TCGA-E2-A14N-01	TCGA-E2-A14N-01	AGGGACCGCAGC	AGGGACCGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	15841195	15841206	AGGGACCGCAGC	-	DEL	ZRSR2	NM_005089	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1279_1290	p.SRDR430in_frame_del	0.850:0.705:0.258:0.245:0.115:0.074:0.028:0.014:0.010:0.015:0.015:0.007	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928,HMMSmart_RRM	(deletion:cds_exon[15840854,15841365])	no_errors	
