Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AMT	275	genome.wustl.edu	37	3	49455277	49455277	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49455277	49455277	A	T	SNP	AMT	NM_000481	human	genbank	57_37b	-1	reviewed	missense	c.1007	p.I336N	1.000	HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain	superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain	-	no_errors	
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139862242	139862243	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	139862242	139862243	-	A	INS	ANKHD1-EIF4EBP3	NM_020690	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1860_1861	p.I620fs	0.993:1.000	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1	-	no_errors	
ANKRD34A	284615	genome.wustl.edu	37	1	145473655	145473655	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145473655	145473655	C	T	SNP	ANKRD34A	NM_001039888	human	genbank	57_37b	+1	validated	silent	c.327	p.H109	1.000	superfamily_Ankyrin repeat,HMMPfam_Ank	HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat	-	no_errors	
CBR1	873	genome.wustl.edu	37	21	37445117	37445117	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	37445117	37445117	G	T	SNP	CBR1	NM_001757	human	genbank	57_37b	+1	reviewed	missense	c.771	p.L257F	0.992	superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_ADH_SHORT	-	no_errors	
EFCAB2	84288	genome.wustl.edu	37	1	245246937	245246937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	245246937	245246937	C	T	SNP	EFCAB2	NM_032328	human	genbank	57_37b	+1	validated	missense	c.320	p.A107V	0.056	superfamily_SSF47473,HMMSmart_EFh	superfamily_SSF47473,HMMSmart_EFh	-	no_errors	
HOXA1	3198	genome.wustl.edu	37	7	27134229	27134229	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27134229	27134229	G	A	SNP	HOXA1	NM_005522	human	genbank	57_37b	-1	reviewed	missense	c.838	p.R280C	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
ING2	3622	genome.wustl.edu	37	4	184426387	184426387	+	Silent	SNP	C	C	T	rs8872	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A15F-01	TCGA-E2-A15F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	184426387	184426387	C	T	SNP	ING2	NM_001564	human	genbank	57_37b	+1	validated	silent	c.39	p.A13	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-		
KCNU1	0	genome.wustl.edu	37	8	36662741	36662741	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	36662741	36662741	G	C	SNP	KCNU1	NM_001031836	human	genbank	57_37b	+1	validated	missense	c.406	p.D136H	0.936	superfamily_SSF81324	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a	-	no_errors	
KIAA1279	26128	genome.wustl.edu	37	10	70748750	70748750	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70748750	70748750	T	C	SNP	KIAA1279	NM_015634	human	genbank	57_37b	+1	validated	silent	c.162	p.P54	0.000	NULL	superfamily_SSF48452	-	no_errors	
LOC100132857	0	genome.wustl.edu	37	X	16492524	16492524	+	RNA	SNP	C	C	T	rs10127289	byCluster;by1000genomes	TCGA-E2-A15F-01	TCGA-E2-A15F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	16492524	16492524	C	T	SNP	LOC100132857	XR_037457	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.992	-	-	-		
LOC100287357	0	genome.wustl.edu	37	15	21010225	21010225	+	RNA	SNP	A	G	G	rs11248646	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-E2-A15F-01	TCGA-E2-A15F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21010225	21010225	A	G	SNP	LOC100287357	XR_078487	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.697	-	-	-		
LOC100287822	0	genome.wustl.edu	37	1	179153697	179153697	+	RNA	SNP	G	G	A	rs2636293	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179153697	179153697	G	A	SNP	LOC100287822	XR_078231	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.997	-	-	-		
LOC148709	148709	genome.wustl.edu	37	1	202843127	202843127	+	RNA	SNP	C	C	T	rs11590469	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-E2-A15F-01	TCGA-E2-A15F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	202843127	202843127	C	T	SNP	LOC148709	NR_002929	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
LOC284551	0	genome.wustl.edu	37	1	31987662	31987662	+	RNA	SNP	G	A	A	rs10914430	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	31987662	31987662	G	A	SNP	LOC284551	NR_027085	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-		
MORC1	27136	genome.wustl.edu	37	3	108819313	108819313	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108819313	108819313	G	A	SNP	MORC1	NM_014429	human	genbank	57_37b	-1	reviewed	missense	c.265	p.R89W	0.974	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMPfam_zf-CW	-	no_errors	
MUC15	143662	genome.wustl.edu	37	11	26584710	26584710	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	26584710	26584710	G	A	SNP	MUC15	NM_001135091	human	genbank	57_37b	-1	validated	missense	c.878	p.T293M	0.048	NULL	NULL	-	no_errors	
PARP15	165631	genome.wustl.edu	37	3	122296675	122296675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122296675	122296675	C	T	SNP	PARP15	NM_001113523	human	genbank	57_37b	+1	validated	missense	c.161	p.S54F	0.002	NULL	superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors	
PBX4	80714	genome.wustl.edu	37	19	19681029	19681029	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19681029	19681029	A	G	SNP	PBX4	NM_025245	human	genbank	57_37b	-1	reviewed	missense	c.521	p.I174T	0.990	HMMPfam_PBC	HMMPfam_PBC,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors	
PDXDC1	23042	genome.wustl.edu	37	16	15128373	15128373	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15128373	15128373	G	-	DEL	PDXDC1	NM_015027	human	genbank	57_37b	+1	validated	frame_shift_del	c.1965	p.A656fs	0.823	NULL	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC	(deletion:cds_exon[15128314,15128410])	no_errors	
PNLIP	5406	genome.wustl.edu	37	10	118313248	118313248	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118313248	118313248	G	A	SNP	PNLIP	NM_000936	human	genbank	57_37b	+1	reviewed	missense	c.469	p.G157S	0.002	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors	
RAG2	5897	genome.wustl.edu	37	11	36615502	36615502	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	36615502	36615502	G	A	SNP	RAG2	NM_000536	human	genbank	57_37b	-1	reviewed	missense	c.217	p.R73C	1.000	HMMPfam_RAG2	HMMPfam_RAG2,PatternScan_PEROXIDASE_1	-	no_errors	
SH3BP5L	80851	genome.wustl.edu	37	1	249107351	249107351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	249107351	249107351	G	A	SNP	SH3BP5L	NM_030645	human	genbank	57_37b	-1	provisional	missense	c.548	p.A183V	1.000	HMMPfam_SH3BP5	HMMPfam_SH3BP5	-	no_errors	
SLC19A1	6573	genome.wustl.edu	37	21	46951971	46951971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46951971	46951971	G	A	SNP	SLC19A1	NM_194255	human	genbank	57_37b	-1	validated	missense	c.281	p.P94L	1.000	superfamily_MFS general substrate transporter,HMMPfam_Folate_carrier	superfamily_MFS general substrate transporter,HMMPfam_Folate_carrier	-	no_errors	
SLC47A2	146802	genome.wustl.edu	37	17	19607404	19607404	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	19607404	19607404	C	T	SNP	SLC47A2	NM_152908	human	genbank	57_37b	-1	validated	missense	c.1105	p.V369I	0.000	HMMPfam_MatE	HMMPfam_MatE	-	no_errors	
STRN3	29966	genome.wustl.edu	37	14	31388247	31388247	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	31388247	31388247	G	C	SNP	STRN3	NM_001083893	human	genbank	57_37b	-1	validated	missense	c.1165	p.P389A	1.000	NULL	HMMPfam_Striatin,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
TYW3	127253	genome.wustl.edu	37	1	75202299	75202299	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	75202299	75202299	A	T	SNP	TYW3	NM_138467	human	genbank	57_37b	+1	validated	missense	c.248	p.D83V	1.000	HMMPfam_TYW3,superfamily_DUF207	HMMPfam_TYW3,superfamily_DUF207	-	no_errors	
UEVLD	55293	genome.wustl.edu	37	11	18568489	18568489	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15F-01	TCGA-E2-A15F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18568489	18568489	G	C	SNP	UEVLD	NM_001040697	human	genbank	57_37b	-1	validated	missense	c.824	p.A275G	0.965	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Ldh_1_N	superfamily_UBC-like,HMMPfam_UEV,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Ldh_1_N,superfamily_LDH C-terminal domain-like,HMMPfam_Ldh_1_C	-	no_errors	
