Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS16	170690	genome.wustl.edu	37	5	5318312	5318312	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	5318312	5318312	G	A	SNP	ADAMTS16	NM_139056	human	genbank	57_37b	+1	reviewed	silent	c.3477	p.P1159	0.106	superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors	
BCL6	604	genome.wustl.edu	37	3	187451419	187451419	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	187451419	187451419	G	C	SNP	BCL6	NM_001130845	human	genbank	57_37b	-1	reviewed	missense	c.63	p.N21K	1.000	superfamily_POZ domain	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
BRS3	680	genome.wustl.edu	37	X	135574435	135574435	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135574435	135574435	G	A	SNP	BRS3	NM_001727	human	genbank	57_37b	+1	validated	silent	c.1101	p.V367	0.036	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
C1orf200	644997	genome.wustl.edu	37	1	9714541	9714542	+	RNA	INS	-	-	CA	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	9714541	9714542	-	CA	INS	C1orf200	NR_027045	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	
C6	729	genome.wustl.edu	37	5	41159254	41159254	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41159254	41159254	G	A	SNP	C6	NM_000065	human	genbank	57_37b	-1	reviewed	nonsense	c.1786	p.R596*	0.021	superfamily_TSP1,HMMPfam_TSP_1,HMMSmart_TSP1	PatternScan_EGF_2,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN,PatternScan_EGF_1,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,HMMSmart_FIMAC,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors	
C9orf142	286257	genome.wustl.edu	37	9	139888077	139888077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139888077	139888077	G	A	SNP	C9orf142	NM_183241	human	genbank	57_37b	+1	predicted	missense	c.536	p.R179Q	0.998	NULL	NULL	-	no_errors	
C9orf69	90120	genome.wustl.edu	37	9	139008534	139008534	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139008534	139008534	A	T	SNP	C9orf69	NM_152833	human	genbank	57_37b	-1	validated	missense	c.287	p.V96E	0.996	NULL	NULL	-	no_errors	
CARKD	55739	genome.wustl.edu	37	13	111274599	111274599	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	111274599	111274599	C	T	SNP	CARKD	NM_018210	human	genbank	57_37b	+1	validated	missense	c.137	p.S46L	0.020	NULL	superfamily_SSF53613,HMMPfam_Carb_kinase	-	no_errors	
CCDC141	285025	genome.wustl.edu	37	2	179730515	179730515	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179730515	179730515	G	A	SNP	CCDC141	NM_173648	human	genbank	57_37b	-1	provisional	silent	c.978	p.A326	0.000	NULL	HMMPfam_I-set	-	no_errors	
CCDC67	159989	genome.wustl.edu	37	11	93097377	93097377	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	93097377	93097377	C	T	SNP	CCDC67	NM_181645	human	genbank	57_37b	+1	validated	nonsense	c.349	p.Q117*	1.000	NULL	NULL	-	no_errors	
CDH20	28316	genome.wustl.edu	37	18	59167643	59167643	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	59167643	59167643	C	A	SNP	CDH20	NM_031891	human	genbank	57_37b	+1	reviewed	missense	c.569	p.T190K	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CHPF	79586	genome.wustl.edu	37	2	220405780	220405780	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220405780	220405780	C	T	SNP	CHPF	NM_024536	human	genbank	57_37b	-1	validated	missense	c.956	p.R319Q	0.873	HMMPfam_CHGN	HMMPfam_CHGN	-	no_errors	
DENND1C	79958	genome.wustl.edu	37	19	6480063	6480063	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6480063	6480063	C	T	SNP	DENND1C	NM_024898	human	genbank	57_37b	-1	validated	splice_site	c.18-1	e2-1	0.919	-	-	-	no_errors	
DHX30	22907	genome.wustl.edu	37	3	47891404	47891404	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47891404	47891404	C	T	SNP	DHX30	NM_138615	human	genbank	57_37b	+1	reviewed	missense	c.3379	p.R1127W	0.999	NULL	superfamily_dsRNA-binding domain-like,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors	
DNAJB4	11080	genome.wustl.edu	37	1	78481910	78481910	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	78481910	78481910	G	A	SNP	DNAJB4	NM_007034	human	genbank	57_37b	+1	provisional	silent	c.993	p.R331	1.000	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP40/DnaJ peptide-binding domain,HMMPfam_DnaJ_C	-	no_errors	
EGFLAM	133584	genome.wustl.edu	37	5	38407953	38407953	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	38407953	38407953	G	A	SNP	EGFLAM	NM_152403	human	genbank	57_37b	+1	validated	silent	c.1194	p.T398	0.998	superfamily_ConA_like_lec_gl	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_EGF,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_EGF,PatternScan_EGF_2,HMMPfam_Laminin_G_2	-	no_errors	
ENSG00000197426	0	genome.wustl.edu	37	11	4730942	4730942	+	Silent	SNP	G	G	T	rs11033474	byCluster;byFrequency;by1000genomes	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4730942	4730942	G	T	SNP	ENSG00000197426	ENST00000357170	human	ensembl	57_37b	+1	known	silent	c.135	p.L45	0.850	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
FAM48B1	170067	genome.wustl.edu	37	X	24383517	24383517	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24383517	24383517	C	T	SNP	FAM48B1	NM_001136234	human	genbank	57_37b	+1	inferred	silent	c.2640	p.G880	0.000	NULL	NULL	-	no_errors	
FES	2242	genome.wustl.edu	37	15	91436887	91436887	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91436887	91436887	C	A	SNP	FES	NM_002005	human	genbank	57_37b	+1	reviewed	missense	c.2049	p.D683E	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	HMMPfam_FCH,HMMSmart_SM00055,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
FGF4	2249	genome.wustl.edu	37	11	69588113	69588113	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	69588113	69588113	G	T	SNP	FGF4	NM_002007	human	genbank	57_37b	-1	reviewed	silent	c.585	p.P195	0.999	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors	
FMO1	2326	genome.wustl.edu	37	1	171251383	171251383	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171251383	171251383	C	A	SNP	FMO1	NM_002021	human	genbank	57_37b	+1	reviewed	missense	c.1094	p.T365N	1.000	HMMPfam_FMO-like	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like,PatternScan_LIPOCALIN,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors	
GABARAP	11337	genome.wustl.edu	37	17	7145570	7145570	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7145570	7145570	T	C	SNP	GABARAP	NM_007278	human	genbank	57_37b	-1	reviewed	missense	c.80	p.D27G	1.000	superfamily_Ubiquitin-like,HMMPfam_MAP1_LC3	superfamily_Ubiquitin-like,HMMPfam_MAP1_LC3	-	no_errors	
GDF6	392255	genome.wustl.edu	37	8	97157010	97157010	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	97157010	97157010	G	A	SNP	GDF6	ENST00000435084	human	ensembl	57_37b	-1	known	nonsense	c.898	p.R300*	1.000	NULL	HMMPfam_TGFb_propeptide	-	no_errors	
HERC1	8925	genome.wustl.edu	37	15	63970199	63970199	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	63970199	63970199	G	C	SNP	HERC1	NM_003922	human	genbank	57_37b	-1	reviewed	silent	c.6915	p.P2305	0.000	NULL	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00449,HMMPfam_SPRY,PatternScan_PHOSPHOPANTETHEINE,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,PatternScan_ARGINASE_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HMCN1	83872	genome.wustl.edu	37	1	185984285	185984295	+	Splice_Site	DEL	TTGTAGTTCCA	TTGTAGTTCCA	-	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	TTGTAGTTCCA	TTGTAGTTCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	185984285	185984295	TTGTAGTTCCA	-	DEL	HMCN1	NM_031935	human	genbank	57_37b	+1	reviewed	splice_site_del	c.4631-6_4631-1	e31-1	0.019:0.000:0.000:0.035:0.997:1.000:1.000:0.999:1.000:1.000:1.000	-	-	(deletion:intron[185976415,185984290], cds_exon[185984291,185984569])	no_errors	
HNRNPA1L2	144983	genome.wustl.edu	37	13	53217035	53217035	+	Silent	SNP	C	C	A	rs78145640	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	53217035	53217035	C	A	SNP	HNRNPA1L2	NM_001011724	human	genbank	57_37b	+1	validated	silent	c.408	p.I136	0.998	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-		
HOXB2	3212	genome.wustl.edu	37	17	46620904	46620904	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46620904	46620904	C	A	SNP	HOXB2	NM_002145	human	genbank	57_37b	-1	reviewed	missense	c.597	p.K199N	1.000	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
IFT81	28981	genome.wustl.edu	37	12	110566885	110566885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	110566885	110566885	G	A	SNP	IFT81	NM_001143779	human	genbank	57_37b	+1	validated	missense	c.379	p.V127I	0.998	NULL	NULL	-	no_errors	
IRAK4	51135	genome.wustl.edu	37	12	44180307	44180307	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	44180307	44180307	G	T	SNP	IRAK4	NM_001114182	human	genbank	57_37b	+1	reviewed	missense	c.1294	p.V432F	0.892	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_DEATH domain,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	-	no_errors	
KBTBD8	84541	genome.wustl.edu	37	3	67054333	67054333	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	67054333	67054333	G	A	SNP	KBTBD8	NM_032505	human	genbank	57_37b	+1	validated	silent	c.864	p.V288	0.999	superfamily_Galactose oxidase central domain	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
KIAA1199	57214	genome.wustl.edu	37	15	81176528	81176528	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	81176528	81176528	T	C	SNP	KIAA1199	NM_018689	human	genbank	57_37b	+1	validated	silent	c.630	p.Y210	0.125	NULL	HMMPfam_G8	-	no_errors	
KIAA1257	57501	genome.wustl.edu	37	3	128707653	128707653	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128707653	128707653	A	G	SNP	KIAA1257	NM_020741	human	genbank	57_37b	-1	predicted	missense	c.371	p.L124P	1.000	NULL	NULL	-	no_errors	
LOC100009676	0	genome.wustl.edu	37	3	101395420	101395420	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	101395420	101395420	C	T	SNP	LOC100009676	NR_024407	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
LOC100290229	0	genome.wustl.edu	37	18	8276687	8276687	+	Missense_Mutation	SNP	A	A	G	rs72913140	byCluster;byFrequency;by1000genomes	TCGA-E2-A15G-01	TCGA-E2-A15G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	8276687	8276687	A	G	SNP	LOC100290229	XM_002347882	human	genbank	57_37b	+1	model	missense	c.91	p.I31V	0.000	NULL	NULL	-		
LOC100293225	0	genome.wustl.edu	37	7	1617434	1617434	+	Missense_Mutation	SNP	G	G	A	rs10246592	byCluster;by1000genomes	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	1617434	1617434	G	A	SNP	LOC100293225	XM_002346069	human	genbank	57_37b	-1	model	missense	c.95	p.T32M	0.010	NULL	NULL	-		
MAP3K1	4214	genome.wustl.edu	37	5	56160565	56160565	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56160565	56160565	A	C	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	missense	c.839	p.Q280P	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56177598	56177598	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56177598	56177598	G	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.2571	p.A858fs	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56177397,56178693])	no_errors	
MKNK2	2872	genome.wustl.edu	37	19	2041144	2041144	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2041144	2041144	G	T	SNP	MKNK2	NM_199054	human	genbank	57_37b	-1	validated	silent	c.1005	p.A335	0.993	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MYB	4602	genome.wustl.edu	37	6	135511399	135511399	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	135511399	135511399	G	A	SNP	MYB	NM_001130173	human	genbank	57_37b	+1	reviewed	nonsense	c.441	p.W147*	1.000	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Cmyb_C	-	no_errors	
MYBPC2	4606	genome.wustl.edu	37	19	50939058	50939058	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50939058	50939058	G	A	SNP	MYBPC2	NM_004533	human	genbank	57_37b	+1	validated	silent	c.135	p.P45	0.117	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2	-	no_errors	
MYBPC2	4606	genome.wustl.edu	37	19	50964798	50964798	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50964798	50964798	G	A	SNP	MYBPC2	NM_004533	human	genbank	57_37b	+1	validated	splice_site	c.2932-1	e25-1	1.000	-	-	-	no_errors	
MYH13	8735	genome.wustl.edu	37	17	10213133	10213133	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10213133	10213133	G	A	SNP	MYH13	NM_003802	human	genbank	57_37b	-1	validated	silent	c.4671	p.H1557	0.622	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors	
NALCN	259232	genome.wustl.edu	37	13	101756927	101756927	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	101756927	101756927	A	T	SNP	NALCN	NM_052867	human	genbank	57_37b	-1	validated	missense	c.2711	p.M904K	1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
PCNXL3	399909	genome.wustl.edu	37	11	65396838	65396838	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65396838	65396838	G	A	SNP	PCNXL3	NM_032223	human	genbank	57_37b	+1	validated	missense	c.3952	p.V1318M	1.000	NULL	HMMPfam_Pecanex_C	-	no_errors	
PCSK6	5046	genome.wustl.edu	37	15	101910696	101910696	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	101910696	101910696	G	A	SNP	PCSK6	ENST00000331826	human	ensembl	57_37b	-1	known	missense	c.1562	p.T521M	0.145	superfamily_Galactose-binding domain-like	superfamily_Protease propeptides/inhibitors,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Galactose-binding domain-like,HMMPfam_P_proprotein,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
PDHA2	5161	genome.wustl.edu	37	4	96761984	96761984	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	96761984	96761984	G	T	SNP	PDHA2	NM_005390	human	genbank	57_37b	+1	validated	missense	c.683	p.G228V	1.000	superfamily_SSF52518,HMMPfam_E1_dh	superfamily_SSF52518,HMMPfam_E1_dh	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15G-01	TCGA-E2-A15G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLEKHG1	57480	genome.wustl.edu	37	6	151055039	151055039	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151055039	151055039	G	A	SNP	PLEKHG1	NM_001029884	human	genbank	57_37b	+1	provisional	silent	c.222	p.T74	0.011	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
POLR3B	55703	genome.wustl.edu	37	12	106824180	106824180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	106824180	106824180	G	A	SNP	POLR3B	NM_018082	human	genbank	57_37b	+1	validated	missense	c.1393	p.V465M	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_3	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors	
RARS2	57038	genome.wustl.edu	37	6	88279250	88279250	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	88279250	88279250	G	T	SNP	RARS2	NM_020320	human	genbank	57_37b	-1	reviewed	missense	c.95	p.P32Q	0.996	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain,HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	-	no_errors	
RNF103	7844	genome.wustl.edu	37	2	86832076	86832076	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86832076	86832076	C	T	SNP	RNF103	NM_005667	human	genbank	57_37b	-1	reviewed	silent	c.948	p.L316	1.000	NULL	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors	
ROBO2	6092	genome.wustl.edu	37	3	77623847	77623847	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	77623847	77623847	T	G	SNP	ROBO2	NM_002942	human	genbank	57_37b	+1	reviewed	missense	c.2169	p.D723E	0.996	superfamily_Fibronectin type III	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
RRP1	8568	genome.wustl.edu	37	21	45217847	45217847	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45217847	45217847	C	T	SNP	RRP1	NM_003683	human	genbank	57_37b	+1	reviewed	missense	c.677	p.P226L	0.990	NULL	HMMPfam_Nop52	-	no_errors	
SBF2	81846	genome.wustl.edu	37	11	9989966	9989966	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	9989966	9989966	T	A	SNP	SBF2	NM_030962	human	genbank	57_37b	-1	reviewed	missense	c.1522	p.N508Y	1.000	NULL	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
SLC16A12	387700	genome.wustl.edu	37	10	91198855	91198855	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	91198855	91198855	G	A	SNP	SLC16A12	NM_213606	human	genbank	57_37b	-1	validated	silent	c.444	p.I148	0.937	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors	
SLC5A9	200010	genome.wustl.edu	37	1	48703432	48703432	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	48703432	48703432	C	A	SNP	SLC5A9	NM_001135181	human	genbank	57_37b	+1	validated	missense	c.1449	p.D483E	1.000	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors	
SRGAP3	9901	genome.wustl.edu	37	3	9027246	9027246	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9027246	9027246	T	C	SNP	SRGAP3	NM_014850	human	genbank	57_37b	-1	validated	missense	c.3257	p.K1086R	1.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
TAF3	83860	genome.wustl.edu	37	10	8006835	8006835	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8006835	8006835	C	G	SNP	TAF3	NM_031923	human	genbank	57_37b	+1	provisional	silent	c.1362	p.S454	0.065	NULL	HMMPfam_Bromo_TP,HMMSmart_BTP,superfamily_Histone-fold,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors	
TAOK3	51347	genome.wustl.edu	37	12	118590144	118590144	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	118590144	118590144	A	G	SNP	TAOK3	NM_016281	human	genbank	57_37b	-1	validated	missense	c.2423	p.L808P	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
TBL1XR1	79718	genome.wustl.edu	37	3	176744190	176744190	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	176744190	176744190	T	A	SNP	TBL1XR1	NM_024665	human	genbank	57_37b	-1	reviewed	nonsense	c.1489	p.K497*	1.000	superfamily_WD40_like,HMMSmart_WD40	HMMSmart_LisH,HMMPfam_LisH,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
TBL1XR1	79718	genome.wustl.edu	37	3	176771659	176771659	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	176771659	176771659	G	A	SNP	TBL1XR1	NM_024665	human	genbank	57_37b	-1	reviewed	nonsense	c.106	p.Q36*	1.000	HMMSmart_LisH	HMMSmart_WD40,HMMSmart_LisH,superfamily_WD40_like,HMMPfam_LisH,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	
TLN2	83660	genome.wustl.edu	37	15	63102180	63102180	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	63102180	63102180	C	T	SNP	TLN2	NM_015059	human	genbank	57_37b	+1	reviewed	silent	c.6720	p.F2240	0.567	NULL	PatternScan_FERM_1,HMMSmart_B41,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-	no_errors	
TRPM1	4308	genome.wustl.edu	37	15	31295003	31295003	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	31295003	31295003	G	A	SNP	TRPM1	NM_002420	human	genbank	57_37b	-1	reviewed	silent	c.3834	p.N1278	0.024	NULL	HMMPfam_Ion_trans	-	no_errors	
USP6	9098	genome.wustl.edu	37	17	5072218	5072218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5072218	5072218	G	A	SNP	USP6	NM_004505	human	genbank	57_37b	+1	validated	missense	c.3385	p.E1129K	0.949	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
YY1AP1	55249	genome.wustl.edu	37	1	155649105	155649105	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155649105	155649105	C	G	SNP	YY1AP1	ENST00000436865	human	ensembl	57_37b	-1	known	splice_site	c.126-1	e3-1	0.000	-	-	-	no_errors	
ZFHX3	463	genome.wustl.edu	37	16	72830186	72830186	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72830186	72830186	T	C	SNP	ZFHX3	NM_006885	human	genbank	57_37b	-1	reviewed	missense	c.6395	p.Y2132C	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
ZFYVE27	118813	genome.wustl.edu	37	10	99502856	99502856	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A15G-01	TCGA-E2-A15G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99502856	99502856	A	-	DEL	ZFYVE27	NM_001002261	human	genbank	57_37b	+1	validated	frame_shift_del	c.203	p.Q68fs	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE	(deletion:cds_exon[99502851,99502921])	no_errors	
