Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431	human	genbank	57_37b	-1	reviewed	missense	c.49	p.E17K	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-		
ANKRD30A	91074	genome.wustl.edu	37	10	37486216	37486216	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	37486216	37486216	C	G	SNP	ANKRD30A	NM_052997	human	genbank	57_37b	+1	validated	silent	c.2454	p.P818	0.011	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE	-	no_errors	
CHRND	1144	genome.wustl.edu	37	2	233399890	233399890	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233399890	233399890	G	-	DEL	CHRND	NM_000751	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1422	p.F475fs	0.991	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	(deletion:cds_exon[233399840,233400022])	no_errors	
DNAH12	201625	genome.wustl.edu	37	3	57414077	57414077	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57414077	57414077	T	C	SNP	DNAH12	NM_178504	human	genbank	57_37b	-1	validated	missense	c.5282	p.Q1761R	0.012	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DNAJB2	3300	genome.wustl.edu	37	2	220144582	220144582	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220144582	220144582	C	T	SNP	DNAJB2	NM_006736	human	genbank	57_37b	+1	validated	silent	c.27	p.D9	0.984	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1,HMMSmart_SM00726,HMMPfam_UIM	-	no_errors	
GABRA6	2559	genome.wustl.edu	37	5	161116743	161116743	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	161116743	161116743	A	C	SNP	GABRA6	NM_000811	human	genbank	57_37b	+1	reviewed	missense	c.631	p.I211L	1.000	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors	
GPRIN2	9721	genome.wustl.edu	37	10	46999178	46999178	+	Missense_Mutation	SNP	A	A	C	rs7090312	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-E2-A15I-01	TCGA-E2-A15I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	46999178	46999178	A	C	SNP	GPRIN2	NM_014696	human	genbank	57_37b	+1	validated	missense	c.298	p.T100P	0.084	NULL	NULL	-		
GRM3	2913	genome.wustl.edu	37	7	86493622	86493622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86493622	86493622	C	T	SNP	GRM3	NM_000840	human	genbank	57_37b	+1	reviewed	missense	c.2591	p.T864M	1.000	NULL	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
HDDC2	51020	genome.wustl.edu	37	6	125598352	125598352	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	125598352	125598352	A	T	SNP	HDDC2	NM_016063	human	genbank	57_37b	-1	validated	missense	c.413	p.F138Y	0.997	HMMSmart_SM00471,HMMPfam_HD	HMMSmart_SM00471,HMMPfam_HD	-	no_errors	
IGFL3	388555	genome.wustl.edu	37	19	46627331	46627331	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46627331	46627331	G	A	SNP	IGFL3	NM_207393	human	genbank	57_37b	-1	validated	silent	c.162	p.C54	0.022	NULL	NULL	-	no_errors	
KLHL1	57626	genome.wustl.edu	37	13	70281929	70281929	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	70281929	70281929	C	T	SNP	KLHL1	NM_020866	human	genbank	57_37b	-1	validated	splice_site	c.2016-1	e10-1	1.000	-	-	-	no_errors	
LOC100288755	0	genome.wustl.edu	37	21	9866073	9866073	+	RNA	SNP	C	C	G	rs6841165	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	9866073	9866073	C	G	SNP	LOC100288755	XR_078568	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.002	-	-	-		
LPO	4025	genome.wustl.edu	37	17	56332273	56332273	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56332273	56332273	C	T	SNP	LPO	NM_006151	human	genbank	57_37b	+1	reviewed	nonsense	c.1207	p.Q403*	0.377	superfamily_Peroxidase_super,HMMPfam_An_peroxidase	PatternScan_PEROXIDASE_1,PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase	-	no_errors	
NDST1	3340	genome.wustl.edu	37	5	149915315	149915315	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149915315	149915315	C	T	SNP	NDST1	NM_001543	human	genbank	57_37b	+1	validated	silent	c.1305	p.G435	0.923	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors	
RPH3A	22895	genome.wustl.edu	37	12	113307580	113307580	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113307580	113307580	G	A	SNP	RPH3A	NM_001143854	human	genbank	57_37b	+1	validated	silent	c.627	p.R209	1.000	HMMPfam_RPH3A_effector	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
RXFP3	51289	genome.wustl.edu	37	5	33937028	33937028	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	33937028	33937028	G	A	SNP	RXFP3	NM_016568	human	genbank	57_37b	+1	provisional	silent	c.183	p.P61	0.875	NULL	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
RYR3	6263	genome.wustl.edu	37	15	33923486	33923486	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	33923486	33923486	G	T	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	silent	c.2859	p.L953	0.982	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SHKBP1	92799	genome.wustl.edu	37	19	41092756	41092756	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41092756	41092756	G	T	SNP	SHKBP1	NM_138392	human	genbank	57_37b	+1	validated	missense	c.1242	p.E414D	1.000	superfamily_WD40 repeat-like	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1	-	no_errors	
SLC35A2	7355	genome.wustl.edu	37	X	48762371	48762371	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48762371	48762371	C	A	SNP	SLC35A2	NM_005660	human	genbank	57_37b	-1	provisional	missense	c.815	p.W272L	1.000	HMMPfam_Nuc_sug_transp	superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_Nuc_sug_transp	-	no_errors	
SPATA21	374955	genome.wustl.edu	37	1	16748588	16748588	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16748588	16748588	C	T	SNP	SPATA21	ENST00000375584	human	ensembl	57_37b	-1	known	silent	c.591	p.K197	0.000	NULL	NULL	-	no_errors	
SYP	6855	genome.wustl.edu	37	X	49050648	49050648	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49050648	49050648	C	T	SNP	SYP	NM_003179	human	genbank	57_37b	-1	reviewed	missense	c.398	p.R133Q	1.000	HMMPfam_MARVEL	HMMPfam_MARVEL,PatternScan_SYNAPTOP	-	no_errors	
TECTA	7007	genome.wustl.edu	37	11	121000388	121000388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	121000388	121000388	G	A	SNP	TECTA	NM_005422	human	genbank	57_37b	+1	reviewed	silent	c.2409	p.S803	0.975	HMMSmart_SM00216,HMMPfam_VWD	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1,superfamily_EGF/Laminin	-	no_errors	
XIRP2	129446	genome.wustl.edu	37	2	168115717	168115717	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A15I-01	TCGA-E2-A15I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	168115717	168115717	A	G	SNP	XIRP2	NM_001079810	human	genbank	57_37b	+1	validated	silent	c.2661	p.T887	0.000	NULL	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
