Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_normal_best_gt	i_failure_reasons	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context_orig	context65	gene_name	newbase	categ	categ_ignoring_null_categ
MGEA5	10724	broad.mit.edu	36	10	103547782	103547782	+	Nonsense_Mutation	SNP	A	C	C			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr10:103547782A>C	uc001ktv.1	-	c.1929T>G	c.(1927-1929)TAT>TAG	p.Y643*	MGEA5_uc001ktu.1_Non-coding_Transcript|MGEA5_uc009xws.1_Nonsense_Mutation_p.Y590*|MGEA5_uc001ktw.1_Nonsense_Mutation_p.Y643*	NM_012215	NP_036347	O60502	NCOAT_HUMAN	meningioma expressed antigen 5 (hyaluronidase)	643	Histone acetyltransferase activity (By similarity).				glycoprotein catabolic process	cytoplasm|nucleus	beta-N-acetylhexosaminidase activity|histone acetyltransferase activity|hyalurononglucosaminidase activity			ovary(2)	2		Colorectal(252;0.207)												0.782609	64.263078	65.957316	18	5	AA		KEEP	---	---	---	---	capture		Epithelial(162;4.67e-09)|all cancers(201;2.54e-07)	Nonsense_Mutation	SNP	103547782	103547782	9945	10	A	C	C	8	8	MGEA5	C	5	4
ATAD1	84896	broad.mit.edu	36	10	89540096	89540096	+	Silent	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr10:89540096G>A	uc001key.1	-	c.333C>T	c.(331-333)ATC>ATT	p.I111I	ATAD1_uc009xth.1_Non-coding_Transcript|ATAD1_uc001kez.1_Silent_p.I111I	NM_032810	NP_116199	Q8NBU5	ATAD1_HUMAN	ATPase family, AAA domain containing 1	111							ATP binding|nucleoside-triphosphatase activity			large_intestine(1)|ovary(1)	2		all_cancers(4;6.78e-12)|Prostate(4;3.56e-12)|all_epithelial(4;5.58e-09)|Melanoma(5;0.0273)|Breast(4;0.0424)|all_hematologic(4;0.0846)|Colorectal(252;0.207)|Glioma(4;0.217)|all_neural(4;0.224)												0.75	37.305515	38.213605	12	4	GG		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (6;0.00131)|GBM - Glioblastoma multiforme(1;1.1e-32)|Lung(2;1.4e-05)|LUSC - Lung squamous cell carcinoma(2;2.69e-05)|Colorectal(12;7.09e-05)|COAD - Colon adenocarcinoma(12;0.000261)|STAD - Stomach adenocarcinoma(243;0.235)	Silent	SNP	89540096	89540096	1089	10	G	A	A	45	45	ATAD1	A	2	2
UEVLD	55293	broad.mit.edu	36	11	18510593	18510593	+	Silent	SNP	A	G	G			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr11:18510593A>G	uc001mot.1	-	c.1266T>C	c.(1264-1266)AAT>AAC	p.N422N	UEVLD_uc001mou.1_3'UTR|UEVLD_uc001mov.1_3'UTR	NM_001040697	NP_001035787	Q8IX04	UEVLD_HUMAN	ubiquitin-conjugating enzyme E2-like isoform a	422					cellular carbohydrate metabolic process|oxidation-reduction process|protein modification process|protein transport		binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor				0														0.588235	34.253461	34.369212	10	7	AA		KEEP	---	---	---	---	capture			Silent	SNP	18510593	18510593	17491	11	A	G	G	16	16	UEVLD	G	4	4
QSER1	79832	broad.mit.edu	36	11	32911643	32911643	+	Missense_Mutation	SNP	C	G	G			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:32911643C>G	uc001mty.1	+	c.1876C>G	c.(1876-1878)CTG>GTG	p.L626V	QSER1_uc001mtz.1_Missense_Mutation_p.L387V|QSER1_uc001mua.2_Missense_Mutation_p.L131V	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	626										ovary(3)|central_nervous_system(2)	5	Breast(20;0.158)													0.471698	77.669873	77.706888	25	28	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	32911643	32911643	13340	11	C	G	G	32	32	QSER1	G	3	3
OR51B6	390058	broad.mit.edu	36	11	5330002	5330002	+	Missense_Mutation	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr11:5330002G>A	uc001mar.1	+	c.689G>A	c.(688-690)GGA>GAA	p.G230E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)												0.467742	87.869517	87.92568	29	33	GG		KEEP	---	---	---	---	capture		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Missense_Mutation	SNP	5330002	5330002	11502	11	G	A	A	41	41	OR51B6	A	2	2
OR5A1	219982	broad.mit.edu	36	11	58967654	58967654	+	Missense_Mutation	SNP	G	T	T			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr11:58967654G>T	uc001nnx.1	+	c.437G>T	c.(436-438)CGC>CTC	p.R146L		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2														0.443114	222.728754	223.198953	74	93	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	58967654	58967654	11549	11	G	T	T	38	38	OR5A1	T	3	3
ZNF26	7574	broad.mit.edu	36	12	132097191	132097191	+	Missense_Mutation	SNP	A	G	G			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr12:132097191A>G	uc001ull.1	+	c.653A>G	c.(652-654)AAT>AGT	p.N218S		NM_019591	NP_062537	P17031	ZNF26_HUMAN	zinc finger protein 26	218	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;1.24e-11)|all_epithelial(31;1.21e-08)|Lung NSC(355;0.000431)												0.333333	27.767003	28.430718	9	18	AA		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(86;9.53e-09)|Epithelial(86;2.63e-07)|all cancers(50;1.14e-05)	Missense_Mutation	SNP	132097191	132097191	18393	12	A	G	G	4	4	ZNF26	G	4	4
LRRIQ1	84125	broad.mit.edu	36	12	83974433	83974433	+	Silent	SNP	T	C	C			TCGA-12-0821-01	TCGA-12-0821-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr12:83974433T>C	uc001tac.1	+	c.1731T>C	c.(1729-1731)GAT>GAC	p.D577D	LRRIQ1_uc001tab.1_Silent_p.D577D|LRRIQ1_uc001taa.1_Silent_p.D552D	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	577										ovary(4)|central_nervous_system(1)	5														0.545455	40.203099	40.242868	12	10	TT		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(134;0.212)	Silent	SNP	83974433	83974433	9405	12	T	C	C	49	49	LRRIQ1	C	4	4
COL4A2	1284	broad.mit.edu	36	13	109930631	109930631	+	Missense_Mutation	SNP	G	T	T			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr13:109930631G>T	uc001vqx.1	+	c.2651G>T	c.(2650-2652)GGT>GTT	p.G884V		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	884	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			central_nervous_system(2)|ovary(1)	3	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)												0.482143	80.629535	80.644429	27	29	GG		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)		Missense_Mutation	SNP	109930631	109930631	3828	13	G	T	T	44	44	COL4A2	T	3	3
ATP8A2	51761	broad.mit.edu	36	13	25309335	25309335	+	Missense_Mutation	SNP	T	A	A			TCGA-12-0821-01	TCGA-12-0821-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr13:25309335T>A	uc001uqk.1	+	c.2789T>A	c.(2788-2790)ATC>AAC	p.I930N	ATP8A2_uc010aaj.1_Missense_Mutation_p.I480N	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	890	Helical; (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)	3		Breast(139;0.0201)|Lung SC(185;0.0225)												0.311111	35.330262	36.762165	14	31	TT		KEEP	---	---	---	---	capture		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)	Missense_Mutation	SNP	25309335	25309335	1212	13	T	A	A	50	50	ATP8A2	A	4	4
FLT1	2321	broad.mit.edu	36	13	27778897	27778897	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr13:27778897C>T	uc001usb.2	-	c.3733G>A	c.(3733-3735)GAC>AAC	p.D1245N	FLT1_uc010aap.1_Missense_Mutation_p.D250N|FLT1_uc010aaq.1_Missense_Mutation_p.D370N|FLT1_uc001usa.2_Missense_Mutation_p.D463N	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1	1245	Cytoplasmic (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(6)|central_nervous_system(5)|ovary(2)|urinary_tract(1)|breast(1)	15	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)			Sunitinib(DB01268)					738				0.318182	18.917781	19.56396	7	15	CC		KEEP	---	---	---	---	capture	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Missense_Mutation	SNP	27778897	27778897	6183	13	C	T	T	31	31	FLT1	T	1	1
FLT1	2321	broad.mit.edu	36	13	27902213	27902213	+	Silent	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr13:27902213C>T	uc001usb.2	-	c.1080G>A	c.(1078-1080)AAG>AAA	p.K360K	FLT1_uc010aar.1_Silent_p.K360K|FLT1_uc001usc.2_Silent_p.K360K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1	360	Ig-like C2-type 4.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(6)|central_nervous_system(5)|ovary(2)|urinary_tract(1)|breast(1)	15	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)			Sunitinib(DB01268)					738				0.510204	78.783673	78.788467	25	24	CC		KEEP	---	---	---	---	capture	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Silent	SNP	27902213	27902213	6183	13	C	T	T	24	24	FLT1	T	2	2
ZFYVE26	23503	broad.mit.edu	36	14	67316786	67316786	+	Nonsense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr14:67316786C>T	uc001xka.1	-	c.4599G>A	c.(4597-4599)TGG>TGA	p.W1533*	ZFYVE26_uc001xkc.2_Nonsense_Mutation_p.W1533*	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1533					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	phosphatidylinositol-3-phosphate binding|protein binding|zinc ion binding			ovary(9)|breast(2)	11														0.833333	14.783258	15.405332	5	1	CC		KEEP	---	---	---	---	capture		all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)	Nonsense_Mutation	SNP	67316786	67316786	18258	14	C	T	T	18	18	ZFYVE26	T	5	2
NDUFB1	4707	broad.mit.edu	36	14	91657857	91657857	+	Missense_Mutation	SNP	G	C	C			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr14:91657857G>C	uc001yaf.1	-	c.18C>G	c.(16-18)CAC>CAG	p.H6Q	NDUFB1_uc001yag.1_Non-coding_Transcript|CPSF2_uc001yah.1_5'Flank	NM_004545	NP_004536	O75438	NDUB1_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	14	Helical; (Potential).				mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0		all_cancers(154;0.0766)			NADH(DB00157)									0.714286	36.290926	36.915266	10	4	GG		KEEP	---	---	---	---	capture		COAD - Colon adenocarcinoma(157;0.205)	Missense_Mutation	SNP	91657857	91657857	10677	14	G	C	C	44	44	NDUFB1	C	3	3
MCTP2	55784	broad.mit.edu	36	15	92700496	92700496	+	Missense_Mutation	SNP	G	T	T			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr15:92700496G>T	uc002btj.1	+	c.1132G>T	c.(1132-1134)GTC>TTC	p.V378F	MCTP2_uc002bti.1_Missense_Mutation_p.V378F|MCTP2_uc010boj.1_Missense_Mutation_p.V107F|MCTP2_uc010bok.1_Missense_Mutation_p.V378F|MCTP2_uc002btl.1_5'UTR|MCTP2_uc002btk.2_5'UTR	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2	378	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)	2	Lung NSC(78;0.0821)|all_lung(78;0.148)													0.416667	46.120762	46.338448	15	21	GG		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)		Missense_Mutation	SNP	92700496	92700496	9790	15	G	T	T	48	48	MCTP2	T	3	3
BAIAP3	8938	broad.mit.edu	36	16	1329186	1329186	+	Silent	SNP	G	C	C			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr16:1329186G>C	uc002clk.1	+	c.345G>C	c.(343-345)TCG>TCC	p.S115S	BAIAP3_uc002clj.1_Silent_p.S97S	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	115					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)												0.6	6.519162	6.561736	3	2	GG		KEEP	---	---	---	---	capture			Silent	SNP	1329186	1329186	1325	16	G	C	C	38	38	BAIAP3	C	3	3
HYDIN	54768	broad.mit.edu	36	16	69651953	69651953	+	Missense_Mutation	SNP	G	T	T			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr16:69651953G>T	uc002ezr.1	-	c.2484C>A	c.(2482-2484)AAC>AAA	p.N828K	HYDIN_uc010cfz.1_Missense_Mutation_p.N573K|HYDIN_uc002ezv.1_Missense_Mutation_p.N828K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	828										ovary(1)	1		Ovarian(137;0.0654)												0.162791	23.991723	33.294151	14	72	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	69651953	69651953	7767	16	G	T	T	44	44	HYDIN	T	3	3
ZCCHC14	23174	broad.mit.edu	36	16	86006476	86006476	+	Splice_Site_SNP	SNP	T	G	G			TCGA-12-0821-01	TCGA-12-0821-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr16:86006476T>G	uc002fjz.1	-	c.973_splice	c.e9-1	p.F325_splice	ZCCHC14_uc002fka.1_Splice_Site_SNP|ZCCHC14_uc002fkb.2_Splice_Site_SNP_p.F101_splice	NM_015144	NP_055959			zinc finger, CCHC domain containing 14						cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			breast(1)	1														0.407407	32.31886	32.521373	11	16	TT		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(80;0.0285)	Splice_Site_SNP	SNP	86006476	86006476	18171	16	T	G	G	56	56	ZCCHC14	G	5	4
ULK2	9706	broad.mit.edu	36	17	19627808	19627808	+	Missense_Mutation	SNP	C	A	A	rs55730189	unknown	TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr17:19627808C>A	uc002gwm.2	-	c.2254G>T	c.(2254-2256)GGG>TGG	p.G752W	ULK2_uc002gwn.1_Missense_Mutation_p.G752W	NM_014683	NP_055498	Q8IYT8	ULK2_HUMAN	unc-51-like kinase 2	752					protein phosphorylation|signal transduction		ATP binding|protein binding|protein serine/threonine kinase activity			skin(2)|large_intestine(1)|stomach(1)	4	all_cancers(12;4.97e-05)|all_epithelial(12;0.00362)|Breast(13;0.186)								p.G752R(KNS60-Tumor)|p.G752R(KYSE30-Tumor)|p.G752R(KPNYN-Tumor)|p.G752R(SNU398-Tumor)	475				0.444444	10.999103	11.023199	4	5	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	19627808	19627808	17534	17	C	A	A	22	22	ULK2	A	3	3
ALOX15	246	broad.mit.edu	36	17	4489130	4489130	+	Silent	SNP	C	G	G			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr17:4489130C>G	uc002fyh.1	-	c.384G>C	c.(382-384)CGG>CGC	p.R128R		NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	128	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process|oxidation-reduction process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)|lung(1)|skin(1)	3					Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)									0.32967	77.31338	79.656511	30	61	CC		KEEP	---	---	---	---	capture		READ - Rectum adenocarcinoma(115;0.0327)	Silent	SNP	4489130	4489130	541	17	C	G	G	22	22	ALOX15	G	3	3
TSPAN16	26526	broad.mit.edu	36	19	11272902	11272902	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:11272902C>T	uc002mqv.1	+	c.368C>T	c.(367-369)ACC>ATC	p.T123I	TSPAN16_uc002mqu.1_Non-coding_Transcript	NM_012466	NP_036598	Q9UKR8	TSN16_HUMAN	transmembrane 4 superfamily member 16	123	Cytoplasmic (Potential).					integral to membrane					0														0.310345	23.963841	24.893273	9	20	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	11272902	11272902	17191	19	C	T	T	18	18	TSPAN16	T	2	2
ZNF536	9745	broad.mit.edu	36	19	35626479	35626479	+	Missense_Mutation	SNP	A	G	G			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr19:35626479A>G	uc002nsu.1	+	c.170A>G	c.(169-171)GAG>GGG	p.E57G	ZNF536_uc010edd.1_Missense_Mutation_p.E57G	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	57					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)	9	Esophageal squamous(110;0.0834)													0.527778	59.023552	59.047554	19	17	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	35626479	35626479	18568	19	A	G	G	11	11	ZNF536	G	4	4
GPR4	2828	broad.mit.edu	36	19	50786512	50786512	+	Silent	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:50786512C>T	uc002pcl.1	-	c.453G>A	c.(451-453)GCG>GCA	p.A151A	GPR4_uc002pcm.1_Silent_p.A151A	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	151	Helical; Name=4; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2						Esophageal Squamous(117;181 1612 1673 14956 42937)								0.333333	98.002973	100.701383	37	74	CC		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)	Silent	SNP	50786512	50786512	6969	19	C	T	T	27	27	GPR4	T	1	1
INSRR	3645	broad.mit.edu	36	1	155078138	155078138	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:155078138C>T	uc001fqg.1	-	c.3470G>A	c.(3469-3471)CGC>CAC	p.R1157H	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1157	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(7)|ovary(4)|kidney(1)|central_nervous_system(1)|skin(1)	14	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)									299				0.4	42.583615	42.935335	16	24	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	155078138	155078138	8075	1	C	T	T	27	27	INSRR	T	1	1
CD1B	910	broad.mit.edu	36	1	156566302	156566302	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:156566302C>T	uc001frx.1	-	c.571G>A	c.(571-573)GTC>ATC	p.V191I	CD1B_uc001frw.1_Missense_Mutation_p.V84I	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	191	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)													0.511111	140.45119	140.460968	46	44	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	156566302	156566302	3102	1	C	T	T	19	19	CD1B	T	1	1
OR10R2	343406	broad.mit.edu	36	1	156716312	156716312	+	Missense_Mutation	SNP	C	G	G			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:156716312C>G	uc001fsp.1	+	c.21C>G	c.(19-21)TTC>TTG	p.F7L		NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)	2	all_hematologic(112;0.0378)													0.311111	40.522704	41.959125	14	31	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	156716312	156716312	11323	1	C	G	G	29	29	OR10R2	G	3	3
CNKSR1	10256	broad.mit.edu	36	1	26387741	26387741	+	Silent	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:26387741G>A	uc001bln.2	+	c.1677G>A	c.(1675-1677)CAG>CAA	p.Q559Q	CNKSR1_uc001blm.2_Silent_p.Q552Q|CNKSR1_uc009vsd.1_Silent_p.Q294Q|CNKSR1_uc009vse.1_Silent_p.Q294Q|CNKSR1_uc001blo.1_Silent_p.Q294Q|CATSPER4_uc001blp.1_5'Flank|CATSPER4_uc009vsf.1_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	559					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			kidney(1)	1		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)				NSCLC(180;1396 2109 28270 30756 34275)								0.538462	42.149553	42.182829	14	12	GG		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)	Silent	SNP	26387741	26387741	3744	1	G	A	A	34	34	CNKSR1	A	2	2
ZSWIM5	57643	broad.mit.edu	36	1	45326219	45326219	+	Silent	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:45326219G>A	uc001cnd.2	-	c.873C>T	c.(871-873)CAC>CAT	p.H291H		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	291							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)													0.387755	53.158409	53.683453	19	30	GG		KEEP	---	---	---	---	capture			Silent	SNP	45326219	45326219	18848	1	G	A	A	44	44	ZSWIM5	A	2	2
MCOLN3	55283	broad.mit.edu	36	1	85271053	85271053	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:85271053C>T	uc001dkp.1	-	c.646G>A	c.(646-648)GTG>ATG	p.V216M	MCOLN3_uc001dkq.1_Missense_Mutation_p.V160M|MCOLN3_uc001dkr.2_Missense_Mutation_p.V216M|MCOLN3_uc009wck.1_5'Flank|MCOLN3_uc001dks.2_Missense_Mutation_p.V61M	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	216						integral to membrane	ion channel activity				0														0.514851	159.787519	159.80644	52	49	CC		KEEP	---	---	---	---	capture		all cancers(265;0.00957)|Epithelial(280;0.0254)	Missense_Mutation	SNP	85271053	85271053	9786	1	C	T	T	20	20	MCOLN3	T	2	2
SRMS	6725	broad.mit.edu	36	20	61643307	61643307	+	Missense_Mutation	SNP	C	T	T	rs61740255	unknown	TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr20:61643307C>T	uc002yfi.1	-	c.1057G>A	c.(1057-1059)GCC>ACC	p.A353T		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	353	Protein kinase.				protein phosphorylation		ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(1)	1	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)									557				0.6	28.277215	28.408386	9	6	CC		KEEP	---	---	---	---	capture	Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)		Missense_Mutation	SNP	61643307	61643307	15666	20	C	T	T	27	27	SRMS	T	1	1
ZNRF3	84133	broad.mit.edu	36	22	27770867	27770867	+	Nonsense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr22:27770867C>T	uc003aeg.2	+	c.433C>T	c.(433-435)CGA>TGA	p.R145*	ZNRF3_uc003aeh.1_Nonsense_Mutation_p.R145*	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	245	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1														0.75	29.181086	29.864595	9	3	CC		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	27770867	27770867	18817	22	C	T	T	27	27	ZNRF3	T	5	1
PSD4	23550	broad.mit.edu	36	2	113657262	113657262	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:113657262C>T	uc002tjc.1	+	c.758C>T	c.(757-759)GCG>GTG	p.A253V	PSD4_uc002tjd.1_5'UTR|PSD4_uc002tje.1_Missense_Mutation_p.A252V|PSD4_uc002tjf.1_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	253					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2														0.447368	50.276722	50.367124	17	21	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	113657262	113657262	13102	2	C	T	T	27	27	PSD4	T	1	1
SCN9A	6335	broad.mit.edu	36	2	166764539	166764539	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:166764539C>T	uc002udq.2	-	c.4823G>A	c.(4822-4824)CGA>CAA	p.R1608Q		NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1619	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)	11					Lamotrigine(DB00555)|Lidocaine(DB00281)									0.430556	90.313535	90.616147	31	41	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	166764539	166764539	14407	2	C	T	T	31	31	SCN9A	T	1	1
OBSL1	23363	broad.mit.edu	36	2	220140415	220140415	+	Missense_Mutation	SNP	T	C	C			TCGA-12-0821-01	TCGA-12-0821-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr2:220140415T>C	uc010fwk.1	-	c.1661A>G	c.(1660-1662)GAG>GGG	p.E554G	OBSL1_uc010fwl.1_Missense_Mutation_p.E29G|OBSL1_uc002vmi.2_Missense_Mutation_p.E554G|OBSL1_uc002vmj.2_Missense_Mutation_p.E141G	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	554	Fibronectin type-III.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)												0.5	8.460415	8.460415	4	4	TT		KEEP	---	---	---	---	capture		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)	Missense_Mutation	SNP	220140415	220140415	11218	2	T	C	C	54	54	OBSL1	C	4	4
ECEL1	9427	broad.mit.edu	36	2	233054462	233054462	+	Missense_Mutation	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:233054462G>A	uc002vsv.2	-	c.1987C>T	c.(1987-1989)CGG>TGG	p.R663W	ECEL1_uc010fya.1_Missense_Mutation_p.R661W|ECEL1_uc010fyb.1_Missense_Mutation_p.R370W	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	663	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)												0.625	15.576833	15.686749	5	3	GG		KEEP	---	---	---	---	capture		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)	Missense_Mutation	SNP	233054462	233054462	5078	2	G	A	A	38	38	ECEL1	A	1	1
KCNG3	170850	broad.mit.edu	36	2	42574027	42574027	+	Missense_Mutation	SNP	C	G	G			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:42574027C>G	uc002rsn.1	-	c.119G>C	c.(118-120)GGC>GCC	p.G40A	MTA3_uc002rso.1_5'Flank|KCNG3_uc002rsm.1_Missense_Mutation_p.G40A	NM_133329	NP_579875	Q8TAE7	KCNG3_HUMAN	potassium voltage-gated channel, subfamily G,	40	Cytoplasmic (Potential).					endoplasmic reticulum|voltage-gated potassium channel complex	protein binding			central_nervous_system(1)	1														0.5	7.329636	7.329636	3	3	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	42574027	42574027	8334	2	C	G	G	26	26	KCNG3	G	3	3
DCTN1	1639	broad.mit.edu	36	2	74446206	74446206	+	Silent	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:74446206G>A	uc002skx.1	-	c.2973C>T	c.(2971-2973)ATC>ATT	p.I991I	DCTN1_uc002sku.1_Silent_p.I856I|DCTN1_uc002skv.1_Silent_p.I857I|DCTN1_uc002skw.1_Silent_p.I967I|DCTN1_uc002sky.2_Silent_p.I954I|DCTN1_uc010ffd.1_Silent_p.I971I|SLC4A5_uc002skl.2_5'Flank|DCTN1_uc002skt.1_5'Flank	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	991	Potential.				cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)	3														0.423077	32.821876	32.955775	11	15	GG		KEEP	---	---	---	---	capture			Silent	SNP	74446206	74446206	4477	2	G	A	A	37	37	DCTN1	A	1	1
CCDC54	84692	broad.mit.edu	36	3	108579639	108579639	+	Missense_Mutation	SNP	A	C	C			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr3:108579639A>C	uc003dwi.1	+	c.515A>C	c.(514-516)AAA>ACA	p.K172T		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	172											0														0.405405	47.018198	47.307488	15	22	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	108579639	108579639	2947	3	A	C	C	1	1	CCDC54	C	4	4
ATR	545	broad.mit.edu	36	3	143717019	143717019	+	Missense_Mutation	SNP	A	G	G			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr3:143717019A>G	uc003eux.2	-	c.4411T>C	c.(4411-4413)TGG>CGG	p.W1471R		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1471					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|breast(4)|ovary(3)|skin(2)|stomach(1)|central_nervous_system(1)|liver(1)	17										936				0.444444	25.398558	25.446798	8	10	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	143717019	143717019	1223	3	A	G	G	5	5	ATR	G	4	4
PIK3CA	5290	broad.mit.edu	36	3	180399308	180399308	+	Missense_Mutation	SNP	A	G	G			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr3:180399308A>G	uc003fjk.1	+	c.1A>G	c.(1-3)ATG>GTG	p.M1V		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	1					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1506)|large_intestine(749)|endometrium(244)|urinary_tract(195)|ovary(136)|skin(112)|stomach(89)|thyroid(77)|central_nervous_system(69)|lung(61)|upper_aerodigestive_tract(48)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|kidney(2)|prostate(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3437	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)					Colon(199;1504 1750 3362 26421 31210 32040)		57		621	TCGA GBM(8;5.49e-07)			0.882353	55.539332	57.981492	15	2	AA		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)		Missense_Mutation	SNP	180399308	180399308	12337	3	A	G	G	4	4	PIK3CA	G	4	4
OXSR1	9943	broad.mit.edu	36	3	38253409	38253409	+	Missense_Mutation	SNP	T	C	C			TCGA-12-0821-01	TCGA-12-0821-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr3:38253409T>C	uc003chy.1	+	c.1027T>C	c.(1027-1029)TTT>CTT	p.F343L	OXSR1_uc010hhb.1_Missense_Mutation_p.F277L	NM_005109	NP_005100	O95747	OXSR1_HUMAN	oxidative-stress responsive 1	343					intracellular protein kinase cascade|protein phosphorylation|response to oxidative stress		ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			skin(1)	1										232				0.45098	73.212335	73.319121	23	28	TT		KEEP	---	---	---	---	capture		KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)	Missense_Mutation	SNP	38253409	38253409	11749	3	T	C	C	52	52	OXSR1	C	4	4
PRSS50	29122	broad.mit.edu	36	3	46734091	46734091	+	Silent	SNP	A	C	C			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr3:46734091A>C	uc003cqe.1	-	c.147T>G	c.(145-147)ACT>ACG	p.T49T	PRSS50_uc003cqg.1_Silent_p.T49T|PRSS50_uc003cqf.1_Intron	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50	49					proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						Pancreas(41;915 1239 11561 17469)								0.333333	9.795296	10.090856	4	8	AA		KEEP	---	---	---	---	capture			Silent	SNP	46734091	46734091	13082	3	A	C	C	7	7	PRSS50	C	4	4
CNTN3	5067	broad.mit.edu	36	3	74503183	74503183	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr3:74503183C>T	uc003dpm.1	-	c.512G>A	c.(511-513)CGG>CAG	p.R171Q		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3	171	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)	4		Lung NSC(201;0.138)|Lung SC(41;0.21)												0.357143	29.241563	29.745097	10	18	CC		KEEP	---	---	---	---	capture		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)	Missense_Mutation	SNP	74503183	74503183	3780	3	C	T	T	23	23	CNTN3	T	1	1
NKX3-2	579	broad.mit.edu	36	4	13153069	13153069	+	Silent	SNP	C	G	G			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:13153069C>G	uc003gmx.2	-	c.648G>C	c.(646-648)GCG>GCC	p.A216A		NM_001189	NP_001180	P78367	NKX32_HUMAN	NK3 homeobox 2	216	Homeobox.				negative regulation of chondrocyte differentiation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	RNA polymerase II transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0														0.75	8.228478	8.449305	3	1	CC		KEEP	---	---	---	---	capture			Silent	SNP	13153069	13153069	10859	4	C	G	G	27	27	NKX3-2	G	3	3
TLL1	7092	broad.mit.edu	36	4	167197813	167197813	+	Missense_Mutation	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:167197813G>A	uc003irh.1	+	c.1748G>A	c.(1747-1749)CGT>CAT	p.R583H		NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1	583	EGF-like 1; calcium-binding (Potential).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)|central_nervous_system(1)	4	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)												0.393939	73.93511	74.585117	26	40	GG		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(119;0.103)	Missense_Mutation	SNP	167197813	167197813	16475	4	G	A	A	40	40	TLL1	A	1	1
KLF3	51274	broad.mit.edu	36	4	38375124	38375124	+	Nonsense_Mutation	SNP	G	T	T			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:38375124G>T	uc003gth.2	+	c.883G>T	c.(883-885)GAA>TAA	p.E295*		NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	295	C2H2-type 2.				multicellular organismal development|regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2														0.566667	49.67591	49.791842	17	13	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	38375124	38375124	8659	4	G	T	T	41	41	KLF3	T	5	3
DRD5	1816	broad.mit.edu	36	4	9393755	9393755	+	Missense_Mutation	SNP	G	T	T			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:9393755G>T	uc003gmb.2	+	c.1004G>T	c.(1003-1005)TGC>TTC	p.C335F		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	335	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane					0					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)									0.345455	51.410959	52.56967	19	36	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	9393755	9393755	4944	4	G	T	T	46	46	DRD5	T	3	3
SLCO6A1	133482	broad.mit.edu	36	5	101752372	101752372	+	Missense_Mutation	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr5:101752372G>A	uc003knn.2	-	c.1936C>T	c.(1936-1938)CGG>TGG	p.R646W	SLCO6A1_uc003kno.2_Missense_Mutation_p.R393W|SLCO6A1_uc003knp.1_Missense_Mutation_p.R646W|SLCO6A1_uc003knq.1_Missense_Mutation_p.R584W	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	646	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|central_nervous_system(1)	4		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)												0.48	34.598092	34.606768	12	13	GG		KEEP	---	---	---	---	capture		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)	Missense_Mutation	SNP	101752372	101752372	15229	5	G	A	A	40	40	SLCO6A1	A	1	1
CD14	929	broad.mit.edu	36	5	139991901	139991901	+	Silent	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:139991901C>T	uc003lgi.1	-	c.852G>A	c.(850-852)TCG>TCA	p.S284S	CD14_uc003lgj.1_Silent_p.S284S	NM_000591	NP_001035110	P08571	CD14_HUMAN	CD14 antigen precursor	284	LRR 9.				apoptosis|cellular response to lipopolysaccharide|cellular response to lipoteichoic acid|inflammatory response|innate immune response|phagocytosis|positive regulation of tumor necrosis factor production|Toll signaling pathway	anchored to membrane|plasma membrane	lipopolysaccharide binding|lipoteichoic acid binding|opsonin receptor activity|peptidoglycan receptor activity				0														0.255319	27.779573	30.331494	12	35	CC		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Silent	SNP	139991901	139991901	3091	5	C	T	T	19	19	CD14	T	1	1
WWC1	23286	broad.mit.edu	36	5	167813563	167813563	+	Silent	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr5:167813563G>A	uc003lzu.1	+	c.2538G>A	c.(2536-2538)GAG>GAA	p.E846E	WWC1_uc003lzv.1_Silent_p.E752E|WWC1_uc003lzw.1_Silent_p.E645E|WWC1_uc010jjf.1_Silent_p.E118E	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1	846	Glu-rich.|Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|breast(1)	3	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)												0.333333	16.244745	16.687184	6	12	GG		KEEP	---	---	---	---	capture	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)	Silent	SNP	167813563	167813563	17985	5	G	A	A	33	33	WWC1	A	2	2
SYNE1	23345	broad.mit.edu	36	6	152502833	152502833	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:152502833C>T	uc010kiw.1	-	c.25403G>A	c.(25402-25404)CGT>CAT	p.R8468H	SYNE1_uc003qor.2_Missense_Mutation_p.R1391H|SYNE1_uc010kiv.1_Missense_Mutation_p.R2992H|SYNE1_uc003qos.2_Missense_Mutation_p.R2992H|SYNE1_uc003qot.2_Missense_Mutation_p.R8420H|SYNE1_uc003qou.2_Missense_Mutation_p.R8468H|SYNE1_uc003qop.2_Missense_Mutation_p.R653H|SYNE1_uc003qoq.2_Missense_Mutation_p.R670H	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8468	Cytoplasmic (Potential).|Spectrin 31.		R -> H (in a colorectal cancer sample; somatic mutation).		cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding	p.R8468H(1)		central_nervous_system(15)|ovary(8)|large_intestine(5)|pancreas(2)	30		Ovarian(120;0.0955)												0.323529	27.411676	28.352434	11	23	CC		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)	Missense_Mutation	SNP	152502833	152502833	15966	6	C	T	T	19	19	SYNE1	T	1	1
FNDC1	84624	broad.mit.edu	36	6	159573429	159573429	+	Missense_Mutation	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:159573429G>A	uc010kjv.1	+	c.1895G>A	c.(1894-1896)CGT>CAT	p.R632H	FNDC1_uc010kjw.1_Missense_Mutation_p.R517H	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	632						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)												0.428571	25.171088	25.264549	9	12	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)	Missense_Mutation	SNP	159573429	159573429	6210	6	G	A	A	40	40	FNDC1	A	1	1
FILIP1	27145	broad.mit.edu	36	6	76081117	76081117	+	Missense_Mutation	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:76081117C>T	uc010kbe.1	-	c.1160G>A	c.(1159-1161)CGA>CAA	p.R387Q	FILIP1_uc003phy.1_Missense_Mutation_p.R384Q|FILIP1_uc003pia.1_Missense_Mutation_p.R384Q|FILIP1_uc003phz.1_Missense_Mutation_p.R285Q|FILIP1_uc003pib.1_Missense_Mutation_p.R136Q	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	384	Potential.										0														0.4125	94.07821	94.607479	33	47	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	76081117	76081117	6132	6	C	T	T	31	31	FILIP1	T	1	1
CASP8AP2	9994	broad.mit.edu	36	6	90633921	90633921	+	Silent	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:90633921G>A	uc003pnt.1	+	c.4191G>A	c.(4189-4191)CCG>CCA	p.P1397P	CASP8AP2_uc003pnr.1_Silent_p.P1397P|CASP8AP2_uc003pns.1_Intron	NM_012115	NP_036247	Q9UKL3	C8AP2_HUMAN	caspase 8 associated protein 2	1397					activation of caspase activity|cell cycle|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|nucleus	caspase activator activity|death receptor binding|transcription corepressor activity			ovary(2)	2		all_cancers(76;3.64e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;4.69e-05)|Lung NSC(302;0.238)				Colon(187;1656 2025 17045 31481 39901)								0.363636	46.789476	47.508718	16	28	GG		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(108;0.0953)	Silent	SNP	90633921	90633921	2797	6	G	A	A	39	39	CASP8AP2	A	1	1
UFSP1	402682	broad.mit.edu	36	7	100324771	100324771	+	Missense_Mutation	SNP	C	G	G			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:100324771C>G	uc003uxc.2	-	c.58G>C	c.(58-60)GCC>CCC	p.A20P		NM_001015072	NP_001015072	Q6NVU6	UFSP1_HUMAN	inactive Ufm1-specific protease 1	20											0	Lung NSC(181;0.041)|all_lung(186;0.0581)													0.333333	6.730292	6.947569	3	6	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	100324771	100324771	17495	7	C	G	G	26	26	UFSP1	G	3	3
MUC17	140453	broad.mit.edu	36	7	100473751	100473751	+	Missense_Mutation	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:100473751G>A	uc003uxp.1	+	c.12334G>A	c.(12334-12336)GCT>ACT	p.A4112T	MUC17_uc010lho.1_Non-coding_Transcript	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17	4112	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|breast(3)|lung(2)	19	Lung NSC(181;0.136)|all_lung(186;0.182)													0.261538	41.447139	44.791164	17	48	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	100473751	100473751	10368	7	G	A	A	38	38	MUC17	A	1	1
PPP1R3A	5506	broad.mit.edu	36	7	113345678	113345678	+	Nonsense_Mutation	SNP	T	A	A			TCGA-12-0821-01	TCGA-12-0821-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr7:113345678T>A	uc010ljy.1	-	c.610A>T	c.(610-612)AAA>TAA	p.K204*		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	204	CBM21.				glycogen metabolic process	integral to membrane				ovary(9)|pancreas(7)|skin(2)|breast(2)|lung(1)	21										235				0.269231	33.927708	36.426522	14	38	TT		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	113345678	113345678	12806	7	T	A	A	61	61	PPP1R3A	A	5	4
BRAF	673	broad.mit.edu	36	7	140099610	140099610	+	Silent	SNP	A	T	T			TCGA-12-0821-01	TCGA-12-0821-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr7:140099610A>T	uc003vwc.2	-	c.1794T>A	c.(1792-1794)GCT>GCA	p.A598A		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	598	Protein kinase.				activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.A598_T599insV(6)|p.D594_T599del(1)	KIAA1549/BRAF(211)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(7681)|large_intestine(4665)|skin(3221)|NS(366)|central_nervous_system(264)|ovary(219)|lung(77)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(27)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(16)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	16798	Melanoma(164;0.00956)				Sorafenib(DB00398)	Colon(40;35 892 2973 5743 27438)		61		451				0.35	38.637626	39.43182	14	26	AA		KEEP	---	---	---	---	capture			Silent	SNP	140099610	140099610	1527	7	A	T	T	15	15	BRAF	T	4	4
GPNMB	10457	broad.mit.edu	36	7	23276205	23276205	+	Silent	SNP	C	T	T			TCGA-12-0821-01	TCGA-12-0821-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:23276205C>T	uc003swc.1	+	c.1351C>T	c.(1351-1353)CTG>TTG	p.L451L	GPNMB_uc003swb.1_Silent_p.L439L	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	451	Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5														0.345679	79.975405	81.678728	28	53	CC		KEEP	---	---	---	---	capture	GBM - Glioblastoma multiforme(13;0.154)		Silent	SNP	23276205	23276205	6894	7	C	T	T	32	32	GPNMB	T	2	2
ANGPT1	284	broad.mit.edu	36	8	108345743	108345743	+	Silent	SNP	T	C	C			TCGA-12-0821-01	TCGA-12-0821-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr8:108345743T>C	uc003ymn.1	-	c.1218A>G	c.(1216-1218)AAA>AAG	p.K406K	ANGPT1_uc003ymo.1_Silent_p.K405K	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1	406	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)	3	Breast(1;5.06e-08)													0.457143	53.4015	53.456744	16	19	TT		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)		Silent	SNP	108345743	108345743	613	8	T	C	C	56	56	ANGPT1	C	4	4
SLC7A2	6542	broad.mit.edu	36	8	17466861	17466861	+	Missense_Mutation	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr8:17466861G>A	uc003wxp.2	+	c.2029G>A	c.(2029-2031)GCA>ACA	p.A677T	SLC7A2_uc003wxq.2_Missense_Mutation_p.A637T|SLC7A2_uc003wxo.2_Missense_Mutation_p.A676T|SLC7A2_uc010lsx.1_Missense_Mutation_p.A637T	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	637	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)	2					L-Lysine(DB00123)|L-Ornithine(DB00129)									0.3125	13.468422	13.969598	5	11	GG		KEEP	---	---	---	---	capture		Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Missense_Mutation	SNP	17466861	17466861	15194	8	G	A	A	34	34	SLC7A2	A	2	2
CSMD1	64478	broad.mit.edu	36	8	2819486	2819486	+	Silent	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr8:2819486G>A	uc010lrh.1	-	c.8637C>T	c.(8635-8637)GGC>GGT	p.G2879G	CSMD1_uc003wqc.2_Silent_p.G2281G|CSMD1_uc010lrg.1_Silent_p.G889G	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1	2879	Sushi 21.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)												0.777778	21.127667	21.765862	7	2	GG		KEEP	---	---	---	---	capture		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)	Silent	SNP	2819486	2819486	4085	8	G	A	A	38	38	CSMD1	A	1	1
WDR44	54521	broad.mit.edu	36	X	117411140	117411140	+	Missense_Mutation	SNP	G	A	A			TCGA-12-0821-01	TCGA-12-0821-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:117411140G>A	uc004eqn.1	+	c.704G>A	c.(703-705)CGC>CAC	p.R235H	WDR44_uc004eqo.1_Missense_Mutation_p.R235H|WDR44_uc010nqi.1_5'UTR	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	235	Pro-rich.					cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|ovary(1)|pancreas(1)	4														0.970588	102.811013	104.631564	33	1	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	117411140	117411140	17869	23	G	A	A	38	38	WDR44	A	1	1
STAG2	10735	broad.mit.edu	36	X	123004178	123004178	+	Splice_Site_SNP	SNP	T	C	C			TCGA-12-0821-01	TCGA-12-0821-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chrX:123004178T>C	uc004eua.1	+	c.462_splice	c.e7+2	p.E154_splice	STAG2_uc004etz.2_Splice_Site_SNP_p.E154_splice|STAG2_uc004eub.1_Splice_Site_SNP_p.E154_splice|STAG2_uc004euc.1_Splice_Site_SNP_p.E154_splice|STAG2_uc004eud.1_Splice_Site_SNP_p.E154_splice|STAG2_uc004eue.1_Splice_Site_SNP_p.E154_splice	NM_001042749	NP_001036215			stromal antigen 2 isoform a						cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5														0.875	25.558072	26.531491	7	1	TT		KEEP	---	---	---	---	capture			Splice_Site_SNP	SNP	123004178	123004178	15761	23	T	C	C	57	57	STAG2	C	5	4
