Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_normal_best_gt	i_failure_reasons	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context_orig	context65	gene_name	newbase	categ	categ_ignoring_null_categ
CUBN	8029	broad.mit.edu	36	10	16913376	16913376	+	Missense_Mutation	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr10:16913376C>T	uc001ioo.1	-	c.10409G>A	c.(10408-10410)TGT>TAT	p.C3470Y		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin	3470	CUB 26.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)	18					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)					2704				0.468085	64.844673	64.886421	22	25	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	16913376	16913376	4211	10	C	T	T	17	17	CUBN	T	2	2
ZNF248	57209	broad.mit.edu	36	10	38166571	38166571	+	Missense_Mutation	SNP	A	G	G			TCGA-28-6450-01	TCGA-28-6450-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr10:38166571A>G	uc001izd.1	-	c.218T>C	c.(217-219)TTC>TCC	p.F73S	ZNF248_uc009xmc.1_Missense_Mutation_p.F73S|ZNF248_uc001izb.2_Non-coding_Transcript|ZNF248_uc001izc.2_Missense_Mutation_p.F73S	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	73	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1														0.25	6.386553	7.302597	4	12	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	38166571	38166571	18384	10	A	G	G	9	9	ZNF248	G	4	4
CDC42BPG	55561	broad.mit.edu	36	11	64353814	64353814	+	Silent	SNP	T	G	G			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr11:64353814T>G	uc001obs.2	-	c.3672A>C	c.(3670-3672)GCA>GCC	p.A1224A		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1224	CNH.				actin cytoskeleton reorganization|intracellular signal transduction|protein phosphorylation	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4										665				0.5	6.921148	6.921148	3	3	TT		KEEP	---	---	---	---	capture			Silent	SNP	64353814	64353814	3202	11	T	G	G	59	59	CDC42BPG	G	4	4
CUX2	23316	broad.mit.edu	36	12	110226434	110226434	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:110226434G>A	uc001tsa.1	+	c.791G>A	c.(790-792)CGG>CAG	p.R264Q		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	264	Potential.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4														0.375	8.92367	9.033156	3	5	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	110226434	110226434	4225	12	G	A	A	39	39	CUX2	A	1	1
ABCC9	10060	broad.mit.edu	36	12	21845360	21845360	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:21845360G>A	uc001rfh.1	-	c.4535C>T	c.(4534-4536)ACG>ATG	p.T1512M	ABCC9_uc001rfg.1_Missense_Mutation_p.T41M	NM_020297	NP_064693	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1512	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)	4					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)									0.38	53.631171	54.255691	19	31	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	21845360	21845360	60	12	G	A	A	40	40	ABCC9	A	1	1
OR6C75	390323	broad.mit.edu	36	12	54045217	54045217	+	Missense_Mutation	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:54045217C>T	uc001sgw.1	+	c.56C>T	c.(55-57)CCA>CTA	p.P19L		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2														0.267717	94.08974	100.278687	34	93	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	54045217	54045217	11609	12	C	T	T	21	21	OR6C75	T	2	2
ZC3H10	84872	broad.mit.edu	36	12	54800720	54800720	+	Missense_Mutation	SNP	C	G	G			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:54800720C>G	uc001sjp.1	+	c.107C>G	c.(106-108)GCC>GGC	p.A36G	ZC3H10_uc009zon.1_Missense_Mutation_p.A36G	NM_032786	NP_116175	Q96K80	ZC3HA_HUMAN	zinc finger CCCH-type containing 10	36	C3H1-type 1.						nucleic acid binding|zinc ion binding				0														0.285714	8.790723	9.370159	4	10	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(18;0.12)		Missense_Mutation	SNP	54800720	54800720	18147	12	C	G	G	26	26	ZC3H10	G	3	3
LCP1	3936	broad.mit.edu	36	13	45616597	45616597	+	Nonsense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr13:45616597G>A	uc001vaz.2	-	c.1234C>T	c.(1234-1236)CGA>TGA	p.R412*	LCP1_uc010ack.1_5'Flank|LCP1_uc001vay.2_Nonsense_Mutation_p.R9*|LCP1_uc001vba.2_Nonsense_Mutation_p.R412*	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	412	Actin-binding 2.|CH 3.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			ovary(2)	2		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)								600				0.37037	60.590628	61.386109	20	34	GG		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)	Nonsense_Mutation	SNP	45616597	45616597	9015	13	G	A	A	37	37	LCP1	A	5	1
SIPA1L1	26037	broad.mit.edu	36	14	71245708	71245708	+	Missense_Mutation	SNP	C	G	G			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr14:71245708C>G	uc001xms.1	+	c.3845C>G	c.(3844-3846)TCG>TGG	p.S1282W	SIPA1L1_uc001xmt.1_Missense_Mutation_p.S1261W|SIPA1L1_uc001xmu.1_Missense_Mutation_p.S1261W|SIPA1L1_uc001xmv.1_Missense_Mutation_p.S1282W|SIPA1L1_uc001xmw.1_Missense_Mutation_p.S47W	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1282					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4														0.1875	7.315265	8.778421	3	13	CC		KEEP	---	---	---	---	capture		all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)	Missense_Mutation	SNP	71245708	71245708	14824	14	C	G	G	31	31	SIPA1L1	G	3	3
RGS6	9628	broad.mit.edu	36	14	72013204	72013204	+	Missense_Mutation	SNP	C	G	G			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr14:72013204C>G	uc001xmy.2	+	c.695C>G	c.(694-696)TCC>TGC	p.S232C	RGS6_uc001xna.2_Missense_Mutation_p.S232C|RGS6_uc001xmx.2_Missense_Mutation_p.S232C|RGS6_uc001xmz.1_Missense_Mutation_p.S93C	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	232					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)	2						Ovarian(143;1926 2468 21071 48641)								0.263158	15.866205	16.830046	5	14	CC		KEEP	---	---	---	---	capture		all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)	Missense_Mutation	SNP	72013204	72013204	13783	14	C	G	G	30	30	RGS6	G	3	3
CCPG1	9236	broad.mit.edu	36	15	53439950	53439950	+	Missense_Mutation	SNP	A	G	G			TCGA-28-6450-01	TCGA-28-6450-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr15:53439950A>G	uc010bfk.1	-	c.1313T>C	c.(1312-1314)CTA>CCA	p.L438P	CCPG1_uc002acv.1_Missense_Mutation_p.L438P|CCPG1_uc002acw.1_Missense_Mutation_p.L163P|CCPG1_uc002acx.2_Intron|CCPG1_uc002acy.2_Missense_Mutation_p.L438P|CCPG1_uc002acz.1_Missense_Mutation_p.L438P|CCPG1_uc002acu.1_Missense_Mutation_p.L294P	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	438	Potential.|Lumenal (Potential).				cell cycle	integral to membrane				ovary(1)	1														0.362637	210.898813	213.921209	66	116	AA		KEEP	---	---	---	---	capture		all cancers(107;0.0354)	Missense_Mutation	SNP	53439950	53439950	3065	15	A	G	G	15	15	CCPG1	G	4	4
POLG	5428	broad.mit.edu	36	15	87677420	87677420	+	Silent	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr15:87677420G>A	uc002bns.2	-	c.570C>T	c.(568-570)CCC>CCT	p.P190P	POLG_uc002bnr.2_Silent_p.P190P	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA polymerase gamma	190					base-excision repair, gap-filling|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					Colon(73;648 1203 11348 18386 27782)								0.428571	15.118645	15.185832	6	8	GG		KEEP	---	---	---	---	capture	STAD - Stomach adenocarcinoma(125;0.165)		Silent	SNP	87677420	87677420	12628	15	G	A	A	39	39	POLG	A	1	1
ZNF768	79724	broad.mit.edu	36	16	30443397	30443398	+	Missense_Mutation	DNP	AA	GC	GC			TCGA-28-6450-01	TCGA-28-6450-01										Phase_I	Unspecified				Illumina GAIIx	g.chr16:30443397_30443398AA>GC	uc002dyk.2	-	c.1564_1565TT>GC	c.(1564-1566)TTC>GCC	p.F522A		NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	522	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0														0.228571	22.285986	24.648087	8	27	AA		KEEP	---	---	---	---	capture			Missense_Mutation	DNP	30443397	30443398	18739	16	AA	GC	GC	9	9	ZNF768	GC	4	4
ZNF629	23361	broad.mit.edu	36	16	30703020	30703020	+	Missense_Mutation	SNP	T	G	G			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr16:30703020T>G	uc002dzs.1	-	c.130A>C	c.(130-132)ATC>CTC	p.I44L		NM_001080417	NP_001073886	Q9UEG4	ZN629_HUMAN	zinc finger protein 629	44					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0														0.25	10.593939	11.501828	4	12	TT		KEEP	---	---	---	---	capture	Colorectal(24;0.198)		Missense_Mutation	SNP	30703020	30703020	18648	16	T	G	G	50	50	ZNF629	G	4	4
PKD1L2	114780	broad.mit.edu	36	16	79708573	79708573	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr16:79708573G>A	uc002fgh.1	-	c.6677C>T	c.(6676-6678)GCC>GTC	p.A2226V	PKD1L2_uc002fgf.1_Missense_Mutation_p.A26V|PKD1L2_uc002fgg.1_Non-coding_Transcript	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2226	Helical; (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3														0.478261	102.971232	102.999577	33	36	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	79708573	79708573	12389	16	G	A	A	42	42	PKD1L2	A	2	2
ME2	4200	broad.mit.edu	36	18	46704503	46704503	+	Missense_Mutation	SNP	T	G	G			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr18:46704503T>G	uc002ley.1	+	c.1094T>G	c.(1093-1095)TTT>TGT	p.F365C	ME2_uc010dpd.1_Missense_Mutation_p.F365C	NM_002396	NP_002387	P23368	MAOM_HUMAN	malic enzyme 2, NAD(+)-dependent, mitochondrial	365					malate metabolic process|oxidation-reduction process	mitochondrial matrix	electron carrier activity|malate dehydrogenase (decarboxylating) activity|malate dehydrogenase (oxaloacetate-decarboxylating) activity|metal ion binding|NAD binding				0		Colorectal(6;0.0273)|all_epithelial(6;0.118)			NADH(DB00157)									0.222222	38.317761	42.788103	14	49	TT		KEEP	---	---	---	---	capture		Colorectal(21;0.0313)|READ - Rectum adenocarcinoma(32;0.105)|STAD - Stomach adenocarcinoma(97;0.184)	Missense_Mutation	SNP	46704503	46704503	9807	18	T	G	G	64	64	ME2	G	4	4
LAMA1	284217	broad.mit.edu	36	18	6975300	6975300	+	Missense_Mutation	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr18:6975300C>T	uc002knm.1	-	c.5596G>A	c.(5596-5598)GAC>AAC	p.D1866N		NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1866	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|breast(2)|pancreas(2)|central_nervous_system(1)	17		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)					1597				0.276423	91.810759	97.336603	34	89	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	6975300	6975300	8928	18	C	T	T	31	31	LAMA1	T	1	1
TXNDC2	84203	broad.mit.edu	36	18	9877888	9877888	+	Missense_Mutation	SNP	T	G	G			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr18:9877888T>G	uc002koi.2	+	c.1412T>G	c.(1411-1413)GTG>GGG	p.V471G	TXNDC2_uc002koh.2_Missense_Mutation_p.V404G|TXNDC2_uc010dky.1_Missense_Mutation_p.V404G	NM_001098529	NP_115619	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	471	Thioredoxin.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2														0.411765	10.530214	10.665986	7	10	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	9877888	9877888	17353	18	T	G	G	59	59	TXNDC2	G	4	4
PEG3	5178	broad.mit.edu	36	19	62019914	62019914	+	Missense_Mutation	SNP	C	G	G			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:62019914C>G	uc002qnu.1	-	c.1708G>C	c.(1708-1710)GAA>CAA	p.E570Q	ZIM2_uc010etp.1_Intron|ZIM2_uc002qnq.1_Intron|ZIM2_uc002qnr.1_Intron|PEG3_uc010etq.1_5'Flank|PEG3_uc002qnt.1_Missense_Mutation_p.E541Q|PEG3_uc002qnv.1_Missense_Mutation_p.E570Q|PEG3_uc010etr.1_Missense_Mutation_p.E570Q|PEG3_uc002qnw.1_Missense_Mutation_p.E446Q|PEG3_uc002qnx.1_Missense_Mutation_p.E444Q	NM_006210	NP_006201	Q9GZU2	PEG3_HUMAN	paternally expressed 3	570	C2H2-type 3.				apoptosis|regulation of transcription, DNA-dependent|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|large_intestine(1)|pancreas(1)	9		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)												0.275	101.622674	107.093673	33	87	CC		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(193;0.0269)	Missense_Mutation	SNP	62019914	62019914	12141	19	C	G	G	30	30	PEG3	G	3	3
PEG3	5178	broad.mit.edu	36	19	62020356	62020356	+	Missense_Mutation	SNP	C	G	G			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:62020356C>G	uc002qnu.1	-	c.1266G>C	c.(1264-1266)ATG>ATC	p.M422I	ZIM2_uc010etp.1_Intron|ZIM2_uc002qnq.1_Intron|ZIM2_uc002qnr.1_Intron|PEG3_uc002qnt.1_Missense_Mutation_p.M393I|PEG3_uc002qnv.1_Missense_Mutation_p.M422I|PEG3_uc010etr.1_Missense_Mutation_p.M422I|PEG3_uc002qnw.1_Missense_Mutation_p.M298I|PEG3_uc002qnx.1_Missense_Mutation_p.M296I	NM_006210	NP_006201	Q9GZU2	PEG3_HUMAN	paternally expressed 3	422					apoptosis|regulation of transcription, DNA-dependent|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|large_intestine(1)|pancreas(1)	9		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)												0.298137	149.036978	154.901149	48	113	CC		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(193;0.0269)	Missense_Mutation	SNP	62020356	62020356	12141	19	C	G	G	29	29	PEG3	G	3	3
FLG	2312	broad.mit.edu	36	1	150552589	150552589	+	Missense_Mutation	SNP	C	A	A			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:150552589C>A	uc001ezu.1	-	c.1397G>T	c.(1396-1398)GGG>GTG	p.G466V		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	466	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)	9	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)													0.347107	112.636726	115.122705	42	79	CC		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(543;0.206)		Missense_Mutation	SNP	150552589	150552589	6160	1	C	A	A	22	22	FLG	A	3	3
AQP10	89872	broad.mit.edu	36	1	152560339	152560339	+	Silent	SNP	T	C	C			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr1:152560339T>C	uc001feu.1	+	c.84T>C	c.(82-84)TTT>TTC	p.F28F	AQP10_uc001fev.2_Silent_p.F28F	NM_080429	NP_536354	Q96PS8	AQP10_HUMAN	aquaporin 10	28	Helical; (Potential).				response to toxin|transmembrane transport|water transport	integral to membrane|plasma membrane	transporter activity			central_nervous_system(1)	1	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)													0.333333	32.544316	33.280178	10	20	TT		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(543;0.185)		Silent	SNP	152560339	152560339	833	1	T	C	C	62	62	AQP10	C	4	4
EFNA3	1944	broad.mit.edu	36	1	153325524	153325524	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:153325524G>A	uc001fhf.1	+	c.598G>A	c.(598-600)GGA>AGA	p.G200R	EFNA3_uc001fhg.1_Missense_Mutation_p.G177R	NM_004952	NP_004943	P52797	EFNA3_HUMAN	ephrin A3	200					cell-cell signaling	anchored to membrane|integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity				0	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)											OREG0013850	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0.405405	46.426571	46.713223	15	22	GG		KEEP	---	---	---	---	capture	all cancers(21;5.67e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000284)|LUSC - Lung squamous cell carcinoma(543;0.193)		Missense_Mutation	SNP	153325524	153325524	5140	1	G	A	A	43	43	EFNA3	A	2	2
AIM2	9447	broad.mit.edu	36	1	157309741	157309741	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:157309741G>A	uc001ftj.1	-	c.173C>T	c.(172-174)GCG>GTG	p.A58V		NM_004833	NP_004824	O14862	AIM2_HUMAN	absent in melanoma 2	58	DAPIN.				cellular response to drug|immune response|interleukin-1 beta secretion	mitochondrion|nucleus				ovary(2)|pancreas(1)	3	all_hematologic(112;0.0429)													0.318182	37.882766	39.150566	14	30	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	157309741	157309741	435	1	G	A	A	38	38	AIM2	A	1	1
C1orf14	81626	broad.mit.edu	36	1	181174954	181174954	+	Missense_Mutation	SNP	C	G	G			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:181174954C>G	uc001gpu.1	-	c.1056G>C	c.(1054-1056)ATG>ATC	p.M352I	C1orf14_uc001gpv.1_Missense_Mutation_p.M233I|C1orf14_uc001gpw.1_Missense_Mutation_p.M72I	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	424											0														0.432432	55.696632	55.843507	16	21	CC		KEEP	---	---	---	---	capture		Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)	Missense_Mutation	SNP	181174954	181174954	2067	1	C	G	G	17	17	C1orf14	G	3	3
TLR5	7100	broad.mit.edu	36	1	221352552	221352552	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:221352552G>A	uc001hnv.1	-	c.445C>T	c.(445-447)CGC>TGC	p.R149C	TLR5_uc001hnw.1_Missense_Mutation_p.R149C|TLR5_uc009xec.1_Missense_Mutation_p.R149C	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5	149	LRR 3.|Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)	2														0.235294	41.274018	45.625503	16	52	GG		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(131;0.0851)	Missense_Mutation	SNP	221352552	221352552	16484	1	G	A	A	37	37	TLR5	A	1	1
ADC	113451	broad.mit.edu	36	1	33356228	33356228	+	Missense_Mutation	SNP	T	A	A			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr1:33356228T>A	uc009vug.1	+	c.1228T>A	c.(1228-1230)TAC>AAC	p.Y410N	ADC_uc001bwr.1_Missense_Mutation_p.Y390N|ADC_uc001bws.1_Missense_Mutation_p.Y390N|ADC_uc009vue.1_Missense_Mutation_p.Y390N|ADC_uc001bwt.1_Missense_Mutation_p.Y295N|ADC_uc001bwu.1_Missense_Mutation_p.Y295N|ADC_uc001bwv.1_Missense_Mutation_p.Y295N|ADC_uc001bww.1_Missense_Mutation_p.Y295N|ADC_uc001bwx.1_Missense_Mutation_p.Y367N	NM_052998	NP_443724	Q96A70	ADC_HUMAN	ODC antizyme inhibitor-2	390					polyamine biosynthetic process|spermatogenesis	cytosol	arginine decarboxylase activity			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)			L-Arginine(DB00125)|Pyridoxal Phosphate(DB00114)									0.340426	43.687062	44.744206	16	31	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	33356228	33356228	288	1	T	A	A	53	53	ADC	A	4	4
DNAJC11	55735	broad.mit.edu	36	1	6628472	6628472	+	Silent	SNP	T	C	C			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr1:6628472T>C	uc001aof.1	-	c.858A>G	c.(856-858)CGA>CGG	p.R286R	DNAJC11_uc001aog.1_Silent_p.R286R	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	286					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)												0.581818	106.197309	106.518285	32	23	TT		KEEP	---	---	---	---	capture		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)	Silent	SNP	6628472	6628472	4813	1	T	C	C	54	54	DNAJC11	C	4	4
MYBL2	4605	broad.mit.edu	36	20	41743895	41743895	+	Missense_Mutation	SNP	G	C	C			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr20:41743895G>C	uc002xlb.1	+	c.172G>C	c.(172-174)GCC>CCC	p.A58P	MYBL2_uc002xla.1_Missense_Mutation_p.A58P	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	58	H-T-H motif (By similarity).|HTH myb-type 1.				regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)								380				0.269231	12.729722	13.976307	7	19	GG		KEEP	---	---	---	---	capture	COAD - Colon adenocarcinoma(18;0.0031)		Missense_Mutation	SNP	41743895	41743895	10405	20	G	C	C	42	42	MYBL2	C	3	3
UBASH3A	53347	broad.mit.edu	36	21	42709725	42709725	+	Missense_Mutation	SNP	T	G	G			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr21:42709725T>G	uc002zbe.1	+	c.773T>G	c.(772-774)CTG>CGG	p.L258R	UBASH3A_uc002zbf.1_Missense_Mutation_p.L220R|UBASH3A_uc010gpc.1_Non-coding_Transcript|UBASH3A_uc010gpd.1_Non-coding_Transcript|UBASH3A_uc010gpe.1_Missense_Mutation_p.L220R	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	258						cytosol|nucleus				ovary(3)	3														0.375	6.474702	6.753777	6	10	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	42709725	42709725	17396	21	T	G	G	55	55	UBASH3A	G	4	4
KYNU	8942	broad.mit.edu	36	2	143430303	143430303	+	Missense_Mutation	SNP	C	A	A			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:143430303C>A	uc002tvl.1	+	c.497C>A	c.(496-498)CCT>CAT	p.P166H	KYNU_uc002tvk.1_Missense_Mutation_p.P166H|KYNU_uc010fnm.1_Missense_Mutation_p.P166H	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	166	Pyridoxal phosphate binding.				anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(1)	1					L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)									0.365854	43.51312	44.162363	15	26	CC		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(221;0.072)	Missense_Mutation	SNP	143430303	143430303	8910	2	C	A	A	24	24	KYNU	A	3	3
LRP2	4036	broad.mit.edu	36	2	169758538	169758538	+	Missense_Mutation	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:169758538C>T	uc002ues.1	-	c.8809G>A	c.(8809-8811)GAG>AAG	p.E2937K		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2937	LDL-receptor class A 21.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	23					Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)					2055				0.384615	91.034726	91.944049	30	48	CC		KEEP	---	---	---	---	capture		STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Missense_Mutation	SNP	169758538	169758538	9329	2	C	T	T	31	31	LRP2	T	1	1
SEMA4F	10505	broad.mit.edu	36	2	74756505	74756505	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:74756505G>A	uc002sna.1	+	c.1604G>A	c.(1603-1605)CGG>CAG	p.R535Q	SEMA4F_uc010ffq.1_Missense_Mutation_p.R502Q|SEMA4F_uc010ffr.1_Missense_Mutation_p.R147Q|SEMA4F_uc002snb.1_Missense_Mutation_p.R147Q|SEMA4F_uc002snc.1_Missense_Mutation_p.R380Q	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W	535	PSI.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)	3														0.40625	40.06883	40.314633	13	19	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	74756505	74756505	14521	2	G	A	A	39	39	SEMA4F	A	1	1
RUVBL1	8607	broad.mit.edu	36	3	129289261	129289261	+	Missense_Mutation	SNP	T	C	C			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr3:129289261T>C	uc003ekh.1	-	c.1097A>G	c.(1096-1098)TAT>TGT	p.Y366C	RUVBL1_uc003eke.1_Intron|RUVBL1_uc003ekf.1_Missense_Mutation_p.Y306C|RUVBL1_uc010hss.1_Missense_Mutation_p.Y366C	NM_003707	NP_003698	Q9Y265	RUVB1_HUMAN	RuvB-like 1	366					cell division|CenH3-containing nucleosome assembly at centromere|DNA recombination|histone H2A acetylation|histone H4 acetylation|mitosis|regulation of growth|regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription, DNA-dependent	Golgi apparatus|membrane|microtubule organizing center|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|DNA helicase activity|protein binding			skin(1)	1														0.385965	74.661286	75.302154	22	35	TT		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(114;0.181)	Missense_Mutation	SNP	129289261	129289261	14232	3	T	C	C	49	49	RUVBL1	C	4	4
PIK3CA	5290	broad.mit.edu	36	3	180418788	180418788	+	Missense_Mutation	SNP	C	A	A			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr3:180418788C>A	uc003fjk.1	+	c.1636C>A	c.(1636-1638)CAG>AAG	p.Q546K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	546			Q -> K (in cancer).|Q -> P (in cancer).|Q -> E (in cancer).|Q -> R (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.Q546K(50)|p.Q546E(9)|p.Q546R(2)|p.Q546L(1)|p.Q546H(1)		breast(1506)|large_intestine(749)|endometrium(244)|urinary_tract(195)|ovary(136)|skin(112)|stomach(89)|thyroid(77)|central_nervous_system(69)|lung(61)|upper_aerodigestive_tract(48)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|kidney(2)|prostate(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3437	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)					Colon(199;1504 1750 3362 26421 31210 32040)		57	p.Q546K(SW403-Tumor)	621	TCGA GBM(8;5.49e-07)			0.352941	36.589643	37.238162	12	22	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)		Missense_Mutation	SNP	180418788	180418788	12337	3	C	A	A	25	25	PIK3CA	A	3	3
GPD1L	23171	broad.mit.edu	36	3	32155202	32155202	+	Silent	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr3:32155202G>A	uc003cew.1	+	c.345G>A	c.(343-345)GCG>GCA	p.A115A		NM_015141	NP_055956	Q8N335	GPD1L_HUMAN	glycerol-3-phosphate dehydrogenase 1-like	115					glycerol-3-phosphate catabolic process|oxidation-reduction process	glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|NAD binding|protein homodimerization activity				0														0.383562	78.978082	79.847402	28	45	GG		KEEP	---	---	---	---	capture			Silent	SNP	32155202	32155202	6879	3	G	A	A	38	38	GPD1L	A	1	1
FGG	2266	broad.mit.edu	36	4	155747425	155747425	+	Missense_Mutation	SNP	C	A	A			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:155747425C>A	uc003iok.1	-	c.1035G>T	c.(1033-1035)CAG>CAT	p.Q345H	FGG_uc003iog.1_Missense_Mutation_p.Q337H|FGG_uc003ioh.1_Missense_Mutation_p.Q345H|FGG_uc010ipx.1_Missense_Mutation_p.Q165H|FGG_uc010ipy.1_Missense_Mutation_p.Q48H|FGG_uc003ioi.1_Missense_Mutation_p.Q48H|FGG_uc003ioj.1_Missense_Mutation_p.Q337H	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	337	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)									0.361702	98.447762	100.060213	34	60	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	155747425	155747425	6107	4	C	A	A	20	20	FGG	A	3	3
FBXO8	26269	broad.mit.edu	36	4	175396823	175396823	+	Silent	SNP	G	C	C			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:175396823G>C	uc003itp.1	-	c.669C>G	c.(667-669)GCC>GCG	p.A223A	FBXO8_uc003itq.1_Silent_p.A182A	NM_012180	NP_036312	Q9NRD0	FBX8_HUMAN	F-box only protein 8	223	SEC7.				regulation of ARF protein signal transduction|ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ARF guanyl-nucleotide exchange factor activity			breast(2)	2		Prostate(90;0.00201)|Melanoma(52;0.012)|Renal(120;0.0183)|all_neural(102;0.0887)|all_hematologic(60;0.107)												0.325	36.064517	37.149861	13	27	GG		KEEP	---	---	---	---	capture		all cancers(43;7.29e-18)|Epithelial(43;1.85e-15)|OV - Ovarian serous cystadenocarcinoma(60;5.62e-09)|GBM - Glioblastoma multiforme(59;0.00115)|STAD - Stomach adenocarcinoma(60;0.00299)|LUSC - Lung squamous cell carcinoma(193;0.1)	Silent	SNP	175396823	175396823	5998	4	G	C	C	43	43	FBXO8	C	3	3
MFSD10	10227	broad.mit.edu	36	4	2904649	2904649	+	Silent	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:2904649C>T	uc003gfw.1	-	c.354G>A	c.(352-354)CCG>CCA	p.P118P	MFSD10_uc003gfv.1_5'Flank|MFSD10_uc003gfx.1_5'UTR|MFSD10_uc003gfy.1_Non-coding_Transcript|MFSD10_uc003gfz.1_Silent_p.P118P|MFSD10_uc003gga.1_Silent_p.P118P|MFSD10_uc003ggb.1_Silent_p.P118P|MFSD10_uc003ggc.1_Silent_p.P118P|C4orf10_uc003ggd.1_5'Flank|C4orf10_uc003gge.1_5'Flank|C4orf10_uc003ggg.1_5'Flank|C4orf10_uc003ggh.2_5'Flank	NM_001120	NP_001111	Q14728	MFS10_HUMAN	major facilitator superfamily domain containing	118	Helical; (Potential).				apoptosis	integral to membrane	tetracycline transporter activity				0														0.533333	22.995684	23.00986	8	7	CC		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (64;0.163)	Silent	SNP	2904649	2904649	9918	4	C	T	T	23	23	MFSD10	T	1	1
UGT2A3	79799	broad.mit.edu	36	4	69833023	69833023	+	Missense_Mutation	SNP	A	G	G			TCGA-28-6450-01	TCGA-28-6450-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr4:69833023A>G	uc003hef.2	-	c.908T>C	c.(907-909)GTG>GCG	p.V303A	UGT2A3_uc010ihp.1_Non-coding_Transcript	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	303	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)	1														0.300813	109.732168	114.088237	37	86	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	69833023	69833023	17513	4	A	G	G	6	6	UGT2A3	G	4	4
PCDHA7	56141	broad.mit.edu	36	5	140194186	140194186	+	Nonsense_Mutation	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:140194186C>T	uc003lhq.1	+	c.34C>T	c.(34-36)CGA>TGA	p.R12*	PCDHA1_uc003lha.1_Intron|PCDHA1_uc003lhb.1_Intron|PCDHA2_uc003lhd.1_Intron|PCDHA3_uc003lhf.1_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA4_uc003lhi.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.1_Intron|PCDHA6_uc003lho.1_Intron|PCDHA6_uc003lhn.1_Intron|PCDHA7_uc003lhp.1_Nonsense_Mutation_p.R12*	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	12					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)	1						NSCLC(160;258 2013 5070 22440 28951)								0.323529	62.129431	64.007711	22	46	CC		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Nonsense_Mutation	SNP	140194186	140194186	11949	5	C	T	T	23	23	PCDHA7	T	5	1
PCDHGB3	56102	broad.mit.edu	36	5	140731939	140731939	+	Silent	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr5:140731939G>A	uc003ljw.1	+	c.1794G>A	c.(1792-1794)TCG>TCA	p.S598S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc003ljv.1_Silent_p.S598S|PCDHGA6_uc003ljx.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	598	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0														0.436364	72.695396	72.888697	24	31	GG		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Silent	SNP	140731939	140731939	11984	5	G	A	A	39	39	PCDHGB3	A	1	1
PLEKHG4B	153478	broad.mit.edu	36	5	214999	214999	+	Missense_Mutation	SNP	G	T	T			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr5:214999G>T	uc003jak.2	+	c.1521G>T	c.(1519-1521)CAG>CAT	p.Q507H		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	507					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1														0.478261	33.422418	33.431949	11	12	GG		KEEP	---	---	---	---	capture	all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)	Missense_Mutation	SNP	214999	214999	12498	5	G	T	T	35	35	PLEKHG4B	T	3	3
HCN1	348980	broad.mit.edu	36	5	45298283	45298283	+	Missense_Mutation	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:45298283C>T	uc003jok.1	-	c.2170G>A	c.(2170-2172)GCC>ACC	p.A724T		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	724	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1														0.222222	7.888993	9.168621	4	14	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	45298283	45298283	7278	5	C	T	T	27	27	HCN1	T	1	1
NOX3	50508	broad.mit.edu	36	6	155785648	155785649	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-28-6450-01	TCGA-28-6450-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:155785648_155785649TC>AA	uc003qqm.1	-	c.1179_1180GA>TT	c.(1177-1182)CTGACA>CTTTCA	p.T394S		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	394	Extracellular (Potential).|FAD-binding FR-type.				oxidation-reduction process		electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)												0.457831	116.134281	116.261782	38	45	TT		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)	Missense_Mutation	DNP	155785648	155785649	10961	6	TC	AA	AA	58	58	NOX3	AA	4	4
NKAPL	222698	broad.mit.edu	36	6	28335792	28335792	+	Missense_Mutation	SNP	A	G	G			TCGA-28-6450-01	TCGA-28-6450-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr6:28335792A>G	uc003nkt.1	+	c.664A>G	c.(664-666)AGA>GGA	p.R222G		NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	222	Lys-rich.									ovary(1)	1														0.375	41.493434	41.931955	12	20	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	28335792	28335792	10841	6	A	G	G	11	11	NKAPL	G	4	4
COL11A2	1302	broad.mit.edu	36	6	33249786	33249786	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:33249786G>A	uc003ocx.1	-	c.2509C>T	c.(2509-2511)CGG>TGG	p.R837W	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.R751W|COL11A2_uc003ocz.1_Missense_Mutation_p.R730W	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	837	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(1)	4						Melanoma(1;90 116 3946 5341 17093)								0.414634	52.669122	52.929624	17	24	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	33249786	33249786	3806	6	G	A	A	37	37	COL11A2	A	1	1
ANKIB1	54467	broad.mit.edu	36	7	91858552	91858552	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:91858552G>A	uc003ulw.2	+	c.2189G>A	c.(2188-2190)CGG>CAG	p.R730Q	ANKIB1_uc010lew.1_Silent_p.S16S	NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	730							protein binding|zinc ion binding				0	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)													0.315789	31.755841	32.921289	12	26	GG		KEEP	---	---	---	---	capture	STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Missense_Mutation	SNP	91858552	91858552	633	7	G	A	A	39	39	ANKIB1	A	1	1
IDO1	3620	broad.mit.edu	36	8	39900261	39900261	+	Silent	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr8:39900261C>T	uc003xnm.1	+	c.654C>T	c.(652-654)CAC>CAT	p.H218H	IDO1_uc003xnn.1_Non-coding_Transcript	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine-pyrrole 2,3 dioxygenase	218					female pregnancy|oxidation-reduction process|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)									0.263158	10.864451	11.830604	5	14	CC		KEEP	---	---	---	---	capture			Silent	SNP	39900261	39900261	7801	8	C	T	T	19	19	IDO1	T	1	1
GPR107	57720	broad.mit.edu	36	9	131881857	131881857	+	Missense_Mutation	SNP	C	G	G			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr9:131881857C>G	uc004bze.1	+	c.514C>G	c.(514-516)CAG>GAG	p.Q172E	GPR107_uc004bzb.1_5'UTR|GPR107_uc004bzc.2_Non-coding_Transcript|GPR107_uc004bzd.1_Missense_Mutation_p.Q172E	NM_020960	NP_066011	Q5VW38	GP107_HUMAN	G protein-coupled receptor 107 isoform 3	172						integral to membrane					0		Ovarian(14;0.000531)												0.35	21.118005	21.515462	7	13	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	131881857	131881857	6897	9	C	G	G	21	21	GPR107	G	3	3
TAF1L	138474	broad.mit.edu	36	9	32622187	32622187	+	Missense_Mutation	SNP	T	C	C			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr9:32622187T>C	uc003zrg.1	-	c.3391A>G	c.(3391-3393)AAA>GAA	p.K1131E		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1131					male meiosis|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding|transcription activator activity			lung(8)|large_intestine(3)|central_nervous_system(3)|skin(2)|ovary(2)|breast(1)|pancreas(1)	20										234				0.403226	85.276952	85.780213	25	37	TT		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)	Missense_Mutation	SNP	32622187	32622187	16044	9	T	C	C	62	62	TAF1L	C	4	4
PIGO	84720	broad.mit.edu	36	9	35083527	35083527	+	Missense_Mutation	SNP	T	C	C			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr9:35083527T>C	uc003zwd.1	-	c.830A>G	c.(829-831)GAC>GGC	p.D277G	PIGO_uc003zwc.1_Missense_Mutation_p.D277G|PIGO_uc003zwe.1_Missense_Mutation_p.D277G|PIGO_uc003zwf.1_Missense_Mutation_p.D277G|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	277					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3														0.222222	6.487722	7.787637	4	14	TT		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)		Missense_Mutation	SNP	35083527	35083527	12318	9	T	C	C	58	58	PIGO	C	4	4
ZNF275	10838	broad.mit.edu	36	X	152265491	152265491	+	Missense_Mutation	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:152265491C>T	uc004fhh.1	+	c.322C>T	c.(322-324)CAC>TAC	p.H108Y	ZNF275_uc004fhg.1_Missense_Mutation_p.H52Y	NM_001080485	NP_001073954	A6NFS0	A6NFS0_HUMAN	zinc finger protein 275	52										ovary(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)													0.647059	33.22149	33.543553	11	6	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	152265491	152265491	18402	23	C	T	T	17	17	ZNF275	T	2	2
L1CAM	3897	broad.mit.edu	36	X	152781496	152781496	+	Missense_Mutation	SNP	C	T	T			TCGA-28-6450-01	TCGA-28-6450-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:152781496C>T	uc004fjb.1	-	c.3590G>A	c.(3589-3591)GGG>GAG	p.G1197E	L1CAM_uc004fjc.1_Missense_Mutation_p.G1193E	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	1197	Cytoplasmic (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)													0.642857	29.878455	30.130038	9	5	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	152781496	152781496	8911	23	C	T	T	22	22	L1CAM	T	2	2
GPR34	2857	broad.mit.edu	36	X	41440011	41440011	+	Missense_Mutation	SNP	T	C	C			TCGA-28-6450-01	TCGA-28-6450-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chrX:41440011T>C	uc004dfp.2	+	c.181T>C	c.(181-183)TAC>CAC	p.Y61H	CASK_uc004dfl.2_Intron|CASK_uc004dfm.2_Intron|CASK_uc004dfn.2_Intron|GPR34_uc004dfq.2_Missense_Mutation_p.Y61H|GPR34_uc010nhg.1_Missense_Mutation_p.Y61H|GPR34_uc004dfr.2_Missense_Mutation_p.Y61H|GPR34_uc010nhh.1_Missense_Mutation_p.Y61H	NM_001097579	NP_005291	Q9UPC5	GPR34_HUMAN	G protein-coupled receptor 34	61	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1														0.783784	107.998242	110.752202	29	8	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	41440011	41440011	6964	23	T	C	C	53	53	GPR34	C	4	4
HUWE1	10075	broad.mit.edu	36	X	53608923	53608923	+	Missense_Mutation	SNP	G	A	A			TCGA-28-6450-01	TCGA-28-6450-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:53608923G>A	uc004dso.1	-	c.6710C>T	c.(6709-6711)CCC>CTC	p.P2237L	HUWE1_uc004dsn.1_Missense_Mutation_p.P1061L|HUWE1_uc004dsp.1_Missense_Mutation_p.P2237L	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2237					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17														0.5	6.349994	6.349993	2	2	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	53608923	53608923	7761	23	G	A	A	43	43	HUWE1	A	2	2
MICALCL	84953	broad.mit.edu	36	11	12272960	12272965	+	In_Frame_Del	DEL	CTCCTA	-	-			TCGA-28-6450-01	TCGA-28-6450-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:12272960_12272965delCTCCTA	uc001mkg.1	+	c.1406_1411delCTCCTA	c.(1405-1413)CCTCCTACA>CCA	p.PT470del		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	470_471					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding				0				Epithelial(150;0.00177)										0.86			6	1				---	---	---	---	capture_indel			In_Frame_Del	DEL	12272960	12272965	9962	11	CTCCTA	-	-	24	24	MICALCL	-	5	5
KRTAP5-5	439915	broad.mit.edu	36	11	1608162	1608191	+	In_Frame_Del	DEL	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	-	-			TCGA-28-6450-01	TCGA-28-6450-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:1608162_1608191delCTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	uc001lty.1	+	c.516_545delCTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	c.(514-546)TCCTGCTGCCAGTCCAGCTGCTGTAAGCCTTAC>TCC	p.CCQSSCCKPY183del		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	183_192	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)										0.35			34	62				---	---	---	---	capture_indel			In_Frame_Del	DEL	1608162	1608191	8886	11	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	-	-	24	24	KRTAP5-5	-	5	5
NF1	4763	broad.mit.edu	36	17	26551694	26551695	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-28-6450-01	TCGA-28-6450-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:26551694_26551695delCT	uc002hgg.1	+	c.1017_1018delCT	c.(1015-1020)AACTCTfs	p.N339fs	NF1_uc002hge.1_Frame_Shift_Del_p.N339fs|NF1_uc002hgf.1_Frame_Shift_Del_p.N339fs|NF1_uc002hgh.1_Frame_Shift_Del_p.N339fs|NF1_uc010csn.1_Frame_Shift_Del_p.N199fs	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	339_340					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(4)		soft_tissue(155)|central_nervous_system(56)|large_intestine(27)|lung(19)|haematopoietic_and_lymphoid_tissue(13)|ovary(12)|autonomic_ganglia(7)|skin(3)|stomach(2)|breast(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	300		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)					p.S340A(RT112-Tumor)	847	TCGA GBM(6;<1E-8)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			0.32			17	36				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	26551694	26551695	10756	17	CT	-	-	20	20	NF1	-	5	5
DHX57	90957	broad.mit.edu	36	2	38941726	38941726	+	Frame_Shift_Del	DEL	A	-	-			TCGA-28-6450-01	TCGA-28-6450-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:38941726_38941726delA	uc002rrf.1	-	c.1330_1330delT	c.(1330-1332)TCTfs	p.S444fs	DHX57_uc002rre.1_5'UTR|DHX57_uc002rrg.2_Frame_Shift_Del_p.S444fs	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	444							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)	2		all_hematologic(82;0.248)				Melanoma(191;1090 2095 4375 23729 47341)								0.32			48	103				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	38941726	38941726	4692	2	A	-	-	11	11	DHX57	-	5	5
PRKG2	5593	broad.mit.edu	36	4	82344772	82344772	+	Frame_Shift_Del	DEL	C	-	-			TCGA-28-6450-01	TCGA-28-6450-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:82344772_82344772delC	uc003hmh.1	-	c.454_454delG	c.(454-456)GACfs	p.D152fs		NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	152					platelet activation|protein phosphorylation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7										728				0.36			124	216				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	82344772	82344772	12966	4	C	-	-	32	32	PRKG2	-	5	5
TBP	6908	broad.mit.edu	36	6	170712963	170712965	+	In_Frame_Del	DEL	CAA	-	-			TCGA-28-6450-01	TCGA-28-6450-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:170712963_170712965delCAA	uc003qxt.1	+	c.214_216delCAA	c.(214-216)CAAdel	p.Q95del	TBP_uc003qxu.1_In_Frame_Del_p.Q95del	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	95	Poly-Gln.		Missing.		cell death|general transcription from RNA polymerase II promoter|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	general RNA polymerase II transcription factor activity|promoter binding|repressing transcription factor binding	p.Q72del(1)		ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)										0.56			10	8				---	---	---	---	capture_indel			In_Frame_Del	DEL	170712963	170712965	16170	6	CAA	-	-	25	25	TBP	-	5	5
