Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCC1	4363	hgsc.bcm.edu	36	16	16108206	16108206	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	16108206	16108206	ABCC1	16	A	A	T	11
ADAM8	101	hgsc.bcm.edu	36	10	134926669	134926669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	134926669	134926669	ADAM8	10	T	T	C	54
ASTN1	460	hgsc.bcm.edu	36	1	175104627	175104627	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	175104627	175104627	ASTN1	1	C	C	T	31
ATP8A2	51761	hgsc.bcm.edu	36	13	24941210	24941211	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Frame_Shift_Ins	INS	24941210	24941211	ATP8A2	13	-	-	T	8
C5orf42	65250	hgsc.bcm.edu	36	5	37220792	37220792	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	37220792	37220792	C5orf42	5	G	G	C	41
C7ORF70	84792	hgsc.bcm.edu	36	7	6337095	6337095	+	Silent	SNP	A	A	G	rs61996356	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Silent	SNP	6337095	6337095	C7ORF70	7	A	A	G	7
CDH6	1004	hgsc.bcm.edu	36	5	31358918	31358918	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	31358918	31358918	CDH6	5	C	C	T	31
CLDN18	51208	hgsc.bcm.edu	36	3	139200500	139200500	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	139200500	139200500	CLDN18	3	G	G	A	33
CPAMD8	27151	hgsc.bcm.edu	36	19	16993868	16993868	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Silent	SNP	16993868	16993868	CPAMD8	19	C	C	T	23
CREBBP	1387	hgsc.bcm.edu	36	16	3760802	3760802	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	3760802	3760802	CREBBP	16	C	C	T	28
DNAH5	1767	hgsc.bcm.edu	36	5	13830370	13830373	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	TGTC	TGTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Frame_Shift_Del	DEL	13830370	13830373	DNAH5	5	TGTC	TGTC	-	63
DNAH7	56171	hgsc.bcm.edu	36	2	196585868	196585868	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	196585868	196585868	DNAH7	2	G	G	A	40
FANCA	2175	hgsc.bcm.edu	36	16	88343806	88343807	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Frame_Shift_Ins	INS	88343806	88343807	FANCA	16	-	-	A	21
FITM1	161247	hgsc.bcm.edu	36	14	23670707	23670707	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Frame_Shift_Del	DEL	23670707	23670707	FITM1	14	C	C	-	26
GORASP1	64689	hgsc.bcm.edu	36	3	39114975	39114975	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	39114975	39114975	GORASP1	3	G	G	C	48
GRIN2B	2904	hgsc.bcm.edu	36	12	13659413	13659413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	13659413	13659413	GRIN2B	12	C	C	T	31
HMCN1	83872	hgsc.bcm.edu	36	1	184147523	184147523	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	184147523	184147523	HMCN1	1	G	G	A	48
HTR2A	3356	hgsc.bcm.edu	36	13	46364629	46364629	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Silent	SNP	46364629	46364629	HTR2A	13	C	C	T	27
HYDIN	54768	hgsc.bcm.edu	36	16	69418777	69418777	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	69418777	69418777	HYDIN	16	G	G	A	39
KCNIP3	30818	hgsc.bcm.edu	36	2	95403795	95403795	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	95403795	95403795	KCNIP3	2	T	T	C	55
LARP6	55323	hgsc.bcm.edu	36	15	68912314	68912314	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	68912314	68912314	LARP6	15	G	G	A	43
MAN2A2	4122	hgsc.bcm.edu	36	15	89254433	89254433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	89254433	89254433	MAN2A2	15	C	C	T	30
MYH7B	57644	hgsc.bcm.edu	36	20	33032526	33032526	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Splice_Site_SNP	SNP	33032526	33032526	MYH7B	20	T	T	G	59
NLRC5	84166	hgsc.bcm.edu	36	16	55673842	55673842	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Frame_Shift_Del	DEL	55673842	55673842	NLRC5	16	C	C	-	18
PCSK6	5046	hgsc.bcm.edu	36	15	99728076	99728076	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	99728076	99728076	PCSK6	15	G	G	A	36
PINX1	54984	hgsc.bcm.edu	36	8	10660825	10660825	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	10660825	10660825	PINX1	8	A	A	C	10
PLA2G4D	283748	hgsc.bcm.edu	36	15	40164629	40164629	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Splice_Site_SNP	SNP	40164629	40164629	PLA2G4D	15	C	C	T	24
PPARD	5467	hgsc.bcm.edu	36	6	35500144	35500144	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Nonsense_Mutation	SNP	35500144	35500144	PPARD	6	C	C	T	25
PRICKLE4	29964	hgsc.bcm.edu	36	6	41862551	41862552	+	In_Frame_Ins	INS	-	-	CTT	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	In_Frame_Ins	INS	41862551	41862552	PRICKLE4	6	-	-	CTT	30
PTK6	5753	hgsc.bcm.edu	36	20	61632607	61632607	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	61632607	61632607	PTK6	20	T	T	C	60
RB1	5925	hgsc.bcm.edu	36	13	47928388	47928388	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	47928388	47928388	RB1	13	G	G	C	40
RHOA	387	hgsc.bcm.edu	36	3	49387977	49387977	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	49387977	49387977	RHOA	3	C	C	A	30
SGEF	26084	hgsc.bcm.edu	36	3	155426382	155426382	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Silent	SNP	155426382	155426382	SGEF	3	A	A	G	4
SLC39A12	221074	hgsc.bcm.edu	36	10	18310417	18310417	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	18310417	18310417	SLC39A12	10	G	G	C	33
SR140	23350	hgsc.bcm.edu	36	3	144236469	144236469	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	144236469	144236469	SR140	3	C	C	T	31
SRR	63826	hgsc.bcm.edu	36	17	2173241	2173241	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	2173241	2173241	SRR	17	A	A	T	7
STK10	6793	hgsc.bcm.edu	36	5	171453345	171453345	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Frame_Shift_Del	DEL	171453345	171453345	STK10	5	C	C	-	25
SULF2	55959	hgsc.bcm.edu	36	20	45798860	45798860	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	45798860	45798860	SULF2	20	G	G	A	39
TAPBPL	55080	hgsc.bcm.edu	36	12	6438088	6438088	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Silent	SNP	6438088	6438088	TAPBPL	12	A	A	G	10
TECPR2	9895	hgsc.bcm.edu	36	14	101970556	101970556	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Frame_Shift_Del	DEL	101970556	101970556	TECPR2	14	T	T	-	55
TET2	54790	hgsc.bcm.edu	36	4	106375154	106375154	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Silent	SNP	106375154	106375154	TET2	4	C	C	T	17
TNNI3K	51086	hgsc.bcm.edu	36	1	74701769	74701769	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	74701769	74701769	TNNI3K	1	A	A	T	8
TP53	7157	hgsc.bcm.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	7519119	7519119	TP53	17	T	C	C	51
SUN2	25777	hgsc.bcm.edu	36	22	37471640	37471640	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	37471640	37471640	SUN2	22	A	A	C	1
WDR47	22911	hgsc.bcm.edu	36	1	109339758	109339758	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	109339758	109339758	WDR47	1	G	G	C	35
WDR66	144406	hgsc.bcm.edu	36	12	120889342	120889342	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	120889342	120889342	WDR66	12	T	T	C	64
WDR74	54663	hgsc.bcm.edu	36	11	62358533	62358533	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Missense_Mutation	SNP	62358533	62358533	WDR74	11	G	G	C	35
ZFP64	55734	hgsc.bcm.edu	36	20	50202719	50202719	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1350-01	TCGA-04-1350-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	TCGA-04-1350-01	Baylor	Frame_Shift_Del	DEL	50202719	50202719	ZFP64	20	C	C	-	27
