Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_normal_best_gt	i_failure_reasons	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context_orig	context65	gene_name	newbase	categ	categ_ignoring_null_categ
RTKN2	219790	broad.mit.edu	36	10	63627970	63627970	+	Silent	SNP	T	C	C			TCGA-06-0168-01	TCGA-06-0168-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr10:63627970T>C	uc001jlw.1	-	c.1533A>G	c.(1531-1533)AAA>AAG	p.K511K	RTKN2_uc009xpf.1_Intron|RTKN2_uc001jlv.1_Silent_p.K165K	NM_145307	NP_660350	Q8IZC4	RTKN2_HUMAN	rhotekin 2	511					signal transduction	intracellular					0	Prostate(12;0.0297)|all_hematologic(501;0.215)													0.526786	442.891826	443.034307	118	106	TT		KEEP	---	---	---	---	capture			Silent	SNP	63627970	63627970	14203	10	T	C	C	60	60	RTKN2	C	4	4
SPRYD5	84767	broad.mit.edu	36	11	55415223	55415223	+	Missense_Mutation	SNP	A	T	T			TCGA-06-0168-01	TCGA-06-0168-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr11:55415223A>T	uc001nia.1	+	c.421A>T	c.(421-423)ATC>TTC	p.I141F		NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	300	B30.2/SPRY.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)												0.423913	236.142247	237.065398	78	106	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	55415223	55415223	15625	11	A	T	T	16	16	SPRYD5	T	4	4
SPRYD5	84767	broad.mit.edu	36	11	55415490	55415490	+	Missense_Mutation	SNP	T	A	A			TCGA-06-0168-01	TCGA-06-0168-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr11:55415490T>A	uc001nia.1	+	c.688T>A	c.(688-690)TGC>AGC	p.C230S		NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	389	B30.2/SPRY.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)												0.371795	88.355759	89.481799	29	49	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	55415490	55415490	15625	11	T	A	A	55	55	SPRYD5	A	4	4
OR8J3	81168	broad.mit.edu	36	11	55661407	55661407	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr11:55661407G>A	uc001nij.1	-	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00693)													0.286486	143.00143	150.566272	53	132	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	55661407	55661407	11653	11	G	A	A	39	39	OR8J3	A	1	1
OR5A1	219982	broad.mit.edu	36	11	58967449	58967449	+	Missense_Mutation	SNP	T	C	C			TCGA-06-0168-01	TCGA-06-0168-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr11:58967449T>C	uc001nnx.1	+	c.232T>C	c.(232-234)TCT>CCT	p.S78P		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2														0.313559	232.549448	239.859851	74	162	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	58967449	58967449	11549	11	T	C	C	62	62	OR5A1	C	4	4
CDC42BPG	55561	broad.mit.edu	36	11	64363583	64363583	+	Silent	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr11:64363583G>A	uc001obs.2	-	c.618C>T	c.(616-618)AAC>AAT	p.N206N		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	206	Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction|protein phosphorylation	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4										665				0.341463	36.527267	37.442682	14	27	GG		KEEP	---	---	---	---	capture			Silent	SNP	64363583	64363583	3202	11	G	A	A	40	40	CDC42BPG	A	1	1
UVRAG	7405	broad.mit.edu	36	11	75396302	75396302	+	Missense_Mutation	SNP	C	G	G			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:75396302C>G	uc001oxc.1	+	c.988C>G	c.(988-990)CCT>GCT	p.P330A	UVRAG_uc001oxd.1_5'UTR|UVRAG_uc009yuh.1_Non-coding_Transcript	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	330					DNA repair	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6														0.303279	115.232733	119.444072	37	85	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	75396302	75396302	17673	11	C	G	G	22	22	UVRAG	G	3	3
OR10A3	26496	broad.mit.edu	36	11	7916766	7916766	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:7916766C>T	uc001mfu.1	-	c.878G>A	c.(877-879)CGA>CAA	p.R293Q		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1														0.255474	89.065494	96.492634	35	102	CC		KEEP	---	---	---	---	capture		Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)	Missense_Mutation	SNP	7916766	7916766	11297	11	C	T	T	31	31	OR10A3	T	1	1
SMAGP	57228	broad.mit.edu	36	12	49949327	49949327	+	Missense_Mutation	SNP	C	G	G			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:49949327C>G	uc001ryc.1	-	c.3G>C	c.(1-3)ATG>ATC	p.M1I	SMAGP_uc001rye.1_Missense_Mutation_p.M1I|SMAGP_uc001ryf.1_Non-coding_Transcript|SMAGP_uc001ryd.1_Missense_Mutation_p.M1I	NM_020467	NP_065200	Q0VAQ4	SMAGP_HUMAN	small trans-membrane and glycosylated protein	1	Extracellular (Potential).					cytoplasmic vesicle membrane|integral to membrane|plasma membrane					0														0.280488	71.580457	75.139403	23	59	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	49949327	49949327	15263	12	C	G	G	29	29	SMAGP	G	3	3
TRPC4	7223	broad.mit.edu	36	13	37135609	37135609	+	Silent	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr13:37135609C>T	uc010abx.1	-	c.1632G>A	c.(1630-1632)ACG>ACA	p.T544T	TRPC4_uc010abv.1_Silent_p.T124T|TRPC4_uc010abw.1_Silent_p.T371T|TRPC4_uc001uws.1_Silent_p.T544T|TRPC4_uc001uwt.1_Silent_p.T544T|TRPC4_uc010aby.1_Silent_p.T544T	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	544	Extracellular (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|breast(1)	4														0.470588	125.594231	125.658154	40	45	CC		KEEP	---	---	---	---	capture		all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)	Silent	SNP	37135609	37135609	17131	13	C	T	T	31	31	TRPC4	T	1	1
AHNAK2	113146	broad.mit.edu	36	14	104485300	104485300	+	Silent	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr14:104485300C>T	uc010axc.1	-	c.7533G>A	c.(7531-7533)CCG>CCA	p.P2511P	AHNAK2_uc001ypx.2_Silent_p.P2411P	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2511						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)												0.329897	254.416899	261.872559	96	195	CC		KEEP	---	---	---	---	capture	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)		Silent	SNP	104485300	104485300	418	14	C	T	T	31	31	AHNAK2	T	1	1
MAP3K9	4293	broad.mit.edu	36	14	70278944	70278944	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr14:70278944G>A	uc001xml.1	-	c.1444C>T	c.(1444-1446)CGG>TGG	p.R482W	MAP3K9_uc001xmk.1_Missense_Mutation_p.R176W|MAP3K9_uc001xmm.1_Missense_Mutation_p.R482W	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	482	Leucine-zipper 2.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GBM(114;411 1587 13539 28235 50070)			p.I479fs(FADU-Tumor)	190				0.361111	106.892058	108.726846	39	69	GG		KEEP	---	---	---	---	capture		all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)	Missense_Mutation	SNP	70278944	70278944	9640	14	G	A	A	40	40	MAP3K9	A	1	1
EPB42	2038	broad.mit.edu	36	15	41286737	41286737	+	Missense_Mutation	SNP	C	A	A			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr15:41286737C>A	uc001zrb.2	-	c.1360G>T	c.(1360-1362)GGC>TGC	p.G454C	EPB42_uc001zqz.2_Missense_Mutation_p.G91C|EPB42_uc010bde.1_Missense_Mutation_p.G269C|EPB42_uc001zra.2_Missense_Mutation_p.G424C	NM_000119	NP_000110	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 1	424					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)												0.337838	67.467764	69.181182	25	49	CC		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(94;8.7e-07)	Missense_Mutation	SNP	41286737	41286737	5351	15	C	A	A	22	22	EPB42	A	3	3
ERN2	10595	broad.mit.edu	36	16	23614182	23614182	+	Missense_Mutation	SNP	A	C	C			TCGA-06-0168-01	TCGA-06-0168-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr16:23614182A>C	uc002dma.2	-	c.1784T>G	c.(1783-1785)GTC>GGC	p.V595G	ERN2_uc010bxp.1_Missense_Mutation_p.V543G	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	547	Protein kinase.|Cytoplasmic (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|protein phosphorylation|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6										225				0.75	7.826016	8.050126	3	1	AA		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(48;0.0156)	Missense_Mutation	SNP	23614182	23614182	5431	16	A	C	C	10	10	ERN2	C	4	4
CACNA1G	8913	broad.mit.edu	36	17	46052120	46052120	+	Silent	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:46052120G>A	uc002irk.1	+	c.5859G>A	c.(5857-5859)CTG>CTA	p.L1953L	CACNA1G_uc002irj.1_Intron|CACNA1G_uc002irl.1_Intron|CACNA1G_uc002irm.1_Silent_p.L1919L|CACNA1G_uc002irn.1_Intron|CACNA1G_uc002iro.1_Intron|CACNA1G_uc002irp.1_Silent_p.L1953L|CACNA1G_uc002irq.1_Silent_p.L1930L|CACNA1G_uc002irr.1_Intron|CACNA1G_uc002irs.1_Silent_p.L1942L|CACNA1G_uc002irt.1_Intron|CACNA1G_uc002irv.1_Intron|CACNA1G_uc002irw.1_Intron|CACNA1G_uc002iru.1_Silent_p.L1919L|CACNA1G_uc002irx.1_Intron|CACNA1G_uc002iry.1_Intron|CACNA1G_uc002irz.1_Intron|CACNA1G_uc002isa.1_Intron|CACNA1G_uc002isb.1_Intron|CACNA1G_uc002isc.1_Silent_p.L1855L|CACNA1G_uc002isd.1_Intron|CACNA1G_uc002ise.1_Silent_p.L1821L|CACNA1G_uc002isf.1_Silent_p.L1848L|CACNA1G_uc002isg.1_Intron|CACNA1G_uc002ish.1_Intron|CACNA1G_uc002isi.1_Intron	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1953	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)				Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)									0.363636	23.292975	23.653309	8	14	GG		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Silent	SNP	46052120	46052120	2660	17	G	A	A	47	47	CACNA1G	A	2	2
KIAA0427	9811	broad.mit.edu	36	18	44639755	44639755	+	Missense_Mutation	SNP	A	G	G			TCGA-06-0168-01	TCGA-06-0168-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr18:44639755A>G	uc002ldd.1	+	c.1630A>G	c.(1630-1632)ATG>GTG	p.M544V	KIAA0427_uc002ldc.1_Missense_Mutation_p.M542V|KIAA0427_uc002lde.2_Missense_Mutation_p.M171V	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	542	MIF4G.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0														0.256579	109.266553	117.424228	39	113	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	44639755	44639755	8483	18	A	G	G	12	12	KIAA0427	G	4	4
LPHN1	22859	broad.mit.edu	36	19	14133186	14133186	+	Missense_Mutation	SNP	A	C	C			TCGA-06-0168-01	TCGA-06-0168-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr19:14133186A>C	uc002myg.1	-	c.1463T>G	c.(1462-1464)GTC>GGC	p.V488G	LPHN1_uc002myh.1_Missense_Mutation_p.V483G	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	488	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(1)|central_nervous_system(1)	2														0.230769	6.318958	7.182487	3	10	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	14133186	14133186	9288	19	A	C	C	10	10	LPHN1	C	4	4
FOSB	2354	broad.mit.edu	36	19	50665742	50665742	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:50665742G>A	uc002pbx.2	+	c.142G>A	c.(142-144)GGG>AGG	p.G48R	ERCC1_uc002pbu.1_Intron|FOSB_uc002pbw.2_Missense_Mutation_p.G48R|FOSB_uc010eka.1_Intron|FOSB_uc010ekb.1_Missense_Mutation_p.G48R|FOSB_uc010ekc.1_Intron|FOSB_uc010ekd.1_Missense_Mutation_p.G48R|FOSB_uc010eke.1_Intron|FOSB_uc002pby.2_Missense_Mutation_p.G48R|FOSB_uc010ekf.1_Intron|FOSB_uc010ekg.1_Intron|FOSB_uc002pca.2_5'UTR	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	48					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)	2		Ovarian(192;0.051)|all_neural(266;0.112)												0.334356	315.48402	323.395331	109	217	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)	Missense_Mutation	SNP	50665742	50665742	6228	19	G	A	A	39	39	FOSB	A	1	1
PNMAL2	57469	broad.mit.edu	36	19	51689789	51689789	+	Silent	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:51689789G>A	uc002pes.2	-	c.774C>T	c.(772-774)ACC>ACT	p.T258T		NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	258										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)												0.160714	14.934976	21.088669	9	47	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)	Silent	SNP	51689789	51689789	12585	19	G	A	A	39	39	PNMAL2	A	1	1
DHX34	9704	broad.mit.edu	36	19	52574845	52574845	+	Silent	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:52574845C>T	uc002pgl.1	+	c.2754C>T	c.(2752-2754)TCC>TCT	p.S918S	DHX34_uc002pgm.1_Silent_p.S47S	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	918						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)	4		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)												0.267123	102.65588	109.809014	39	107	CC		KEEP	---	---	---	---	capture		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)	Silent	SNP	52574845	52574845	4686	19	C	T	T	22	22	DHX34	T	2	2
C1orf66	51093	broad.mit.edu	36	1	154968876	154968876	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:154968876G>A	uc001fpu.1	+	c.416G>A	c.(415-417)CGG>CAG	p.R139Q	C1orf66_uc001fpv.1_Missense_Mutation_p.R139Q	NM_015997	NP_057081	Q96FB5	RRNAD_HUMAN	hypothetical protein LOC51093 isoform 1	139						integral to membrane	rRNA (adenine-N6,N6-)-dimethyltransferase activity				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)													0.491667	194.12361	194.130823	59	61	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	154968876	154968876	2130	1	G	A	A	39	39	C1orf66	A	1	1
USH2A	7399	broad.mit.edu	36	1	213880668	213880668	+	Silent	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:213880668G>A	uc001hku.1	-	c.14823C>T	c.(14821-14823)GAC>GAT	p.D4941D		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4941	Fibronectin type-III 35.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|kidney(1)|central_nervous_system(1)	22														0.432624	176.846872	177.406241	61	80	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)	Silent	SNP	213880668	213880668	17598	1	G	A	A	48	48	USH2A	A	2	2
LYST	1130	broad.mit.edu	36	1	234036347	234036347	+	Silent	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:234036347C>T	uc001hxj.1	-	c.2712G>A	c.(2710-2712)GTG>GTA	p.V904V	LYST_uc009xgb.1_Non-coding_Transcript|LYST_uc001hxl.1_Silent_p.V904V	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	904					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)												0.266667	118.918123	127.038384	44	121	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(106;0.000674)		Silent	SNP	234036347	234036347	9505	1	C	T	T	21	21	LYST	T	2	2
RBBP4	5928	broad.mit.edu	36	1	32907420	32907420	+	Missense_Mutation	SNP	T	G	G			TCGA-06-0168-01	TCGA-06-0168-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr1:32907420T>G	uc001bvr.1	+	c.763T>G	c.(763-765)TGG>GGG	p.W255G	RBBP4_uc001bvs.1_Missense_Mutation_p.W254G	NM_005610	NP_005601	Q09028	RBBP4_HUMAN	retinoblastoma binding protein 4 isoform a	255	WD 3.				cell cycle|CenH3-containing nucleosome assembly at centromere|DNA replication|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex|NuRD complex|NURF complex|Sin3 complex	histone binding|histone deacetylase binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)												0.38961	103.862774	104.674139	30	47	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	32907420	32907420	13562	1	T	G	G	63	63	RBBP4	G	4	4
CYP4A11	1579	broad.mit.edu	36	1	47172273	47172273	+	Missense_Mutation	SNP	G	A	A	rs66477740	unknown	TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:47172273G>A	uc001cqp.2	-	c.1154C>T	c.(1153-1155)CCG>CTG	p.P385L	CYP4A11_uc001cqq.2_Missense_Mutation_p.P385L	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	385					long-chain fatty acid metabolic process|oxidation-reduction process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)	2					NADH(DB00157)									0.521739	162.230543	162.270658	48	44	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	47172273	47172273	4348	1	G	A	A	39	39	CYP4A11	A	1	1
LRP8	7804	broad.mit.edu	36	1	53504841	53504841	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:53504841C>T	uc001cvi.1	-	c.1319G>A	c.(1318-1320)CGG>CAG	p.R440Q	LRP8_uc001cvh.1_5'UTR|LRP8_uc001cvk.1_Missense_Mutation_p.R270Q|LRP8_uc001cvj.1_Missense_Mutation_p.R440Q|LRP8_uc001cvl.1_Missense_Mutation_p.R311Q|LRP8_uc001cvm.1_Missense_Mutation_p.R25Q	NM_004631	NP_004622	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein	440	Extracellular (Potential).				cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola|integral to membrane	apolipoprotein E binding|calcium ion binding|very-low-density lipoprotein particle receptor activity				0														0.444934	322.647372	323.246837	101	126	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	53504841	53504841	9336	1	C	T	T	23	23	LRP8	T	1	1
SGOL2	151246	broad.mit.edu	36	2	201145766	201145766	+	Missense_Mutation	SNP	A	G	G			TCGA-06-0168-01	TCGA-06-0168-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr2:201145766A>G	uc002uvw.1	+	c.2452A>G	c.(2452-2454)ATA>GTA	p.I818V		NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2	818					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)	2														0.268966	123.866249	130.84663	39	106	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	201145766	201145766	14708	2	A	G	G	4	4	SGOL2	G	4	4
MTA3	57504	broad.mit.edu	36	2	42736915	42736915	+	Nonsense_Mutation	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:42736915C>T	uc002rso.1	+	c.403C>T	c.(403-405)CGA>TGA	p.R135*	MTA3_uc002rsp.1_Nonsense_Mutation_p.R135*|MTA3_uc002rsq.1_Nonsense_Mutation_p.R191*|MTA3_uc002rsr.1_Nonsense_Mutation_p.R191*	NM_020744	NP_065795	Q9BTC8	MTA3_HUMAN	metastasis associated 1 family, member 3	191	ELM2.				regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2														0.350515	102.424989	104.335355	34	63	CC		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	42736915	42736915	10303	2	C	T	T	31	31	MTA3	T	5	1
MST1	4485	broad.mit.edu	36	3	49698920	49698920	+	Splice_Site_SNP	SNP	T	G	G			TCGA-06-0168-01	TCGA-06-0168-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr3:49698920T>G	uc003cxg.1	-	c.806_splice	c.e8-1	p.G269_splice	MST1_uc010hkx.1_Intron	NM_020998	NP_066278			macrophage stimulating 1 (hepatocyte growth						proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1						GBM(110;181 1524 8005 22865 46297)								0.229167	31.301938	34.528797	11	37	TT		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Splice_Site_SNP	SNP	49698920	49698920	10283	3	T	G	G	56	56	MST1	G	5	4
NDST4	64579	broad.mit.edu	36	4	116011497	116011497	+	Missense_Mutation	SNP	G	C	C			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:116011497G>C	uc003ibu.1	-	c.1595C>G	c.(1594-1596)ACC>AGC	p.T532S	NDST4_uc010imw.1_Non-coding_Transcript	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	N-deacetylase/N-sulfotransferase (heparan	532	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1		Ovarian(17;0.156)												0.230769	71.907898	78.772421	24	80	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(123;0.000562)	Missense_Mutation	SNP	116011497	116011497	10657	4	G	C	C	44	44	NDST4	C	3	3
NDST3	9348	broad.mit.edu	36	4	119195121	119195121	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:119195121G>A	uc003ibx.1	+	c.608G>A	c.(607-609)CGT>CAT	p.R203H	NDST3_uc003ibw.2_Missense_Mutation_p.R203H	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	203	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1														0.314754	267.989143	277.301454	96	209	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	119195121	119195121	10656	4	G	A	A	40	40	NDST3	A	1	1
ASB5	140458	broad.mit.edu	36	4	177427185	177427185	+	Silent	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:177427185C>T	uc003iuq.1	-	c.69G>A	c.(67-69)TCG>TCA	p.S23S		NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	23					intracellular signal transduction						0		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)												0.330645	113.033054	116.184763	41	83	CC		KEEP	---	---	---	---	capture		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)	Silent	SNP	177427185	177427185	1044	4	C	T	T	27	27	ASB5	T	1	1
FGFR3	2261	broad.mit.edu	36	4	1777687	1777687	+	Missense_Mutation	SNP	A	G	G			TCGA-06-0168-01	TCGA-06-0168-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr4:1777687A>G	uc003gdr.2	+	c.1948A>G	c.(1948-1950)AAG>GAG	p.K650E	FGFR3_uc003gds.2_Missense_Mutation_p.K538E|FGFR3_uc003gdq.2_Missense_Mutation_p.K651E	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	650	Protein kinase.|Cytoplasmic (Potential).		K -> M (in KERSEB, ACH and TD; type 1).|K -> E (in KERSEB, TD and bladder cancer samples; bladder transitional cell carcinoma; somatic mutation).|K -> Q (in hypochondroplasia and bladder cancer; in hypochondroplasia the form is milder than that seen in individuals with the K-540 or M-650 mutations).		bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation|protein phosphorylation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding	p.K650E(67)|p.K650M(39)|p.K650Q(5)|p.K650N(1)		urinary_tract(1980)|skin(310)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)	2398		Breast(71;0.212)|all_epithelial(65;0.241)			Palifermin(DB00039)			1	p.K650E(OPM2-Tumor)|p.K650E(J82-Tumor)	527				0.264706	27.76076	29.461227	9	25	AA		KEEP	---	---	---	---	capture	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Missense_Mutation	SNP	1777687	1777687	6104	4	A	G	G	9	9	FGFR3	G	4	4
PCDHA3	56145	broad.mit.edu	36	5	140162333	140162333	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0168-01	TCGA-06-0168-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:140162333C>T	uc003lhf.1	+	c.1367C>T	c.(1366-1368)TCG>TTG	p.S456L	PCDHA1_uc003lha.1_Intron|PCDHA1_uc003lhb.1_Intron|PCDHA2_uc003lhd.1_Intron|PCDHA3_uc003lhe.1_Missense_Mutation_p.S456L	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	456	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(5)	5														0.366492	194.315863	197.30168	70	121	CC		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Missense_Mutation	SNP	140162333	140162333	11945	5	C	T	T	31	31	PCDHA3	T	1	1
SASH1	23328	broad.mit.edu	36	6	148895730	148895730	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:148895730G>A	uc003qme.1	+	c.1669G>A	c.(1669-1671)GGG>AGG	p.G557R	SASH1_uc003qmf.1_5'UTR	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	557	SH3.						protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)												0.274809	198.997729	210.95659	72	190	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)	Missense_Mutation	SNP	148895730	148895730	14329	6	G	A	A	39	39	SASH1	A	1	1
DST	667	broad.mit.edu	36	6	56674650	56674650	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:56674650G>A	uc003pcz.2	-	c.316C>T	c.(316-318)CGC>TGC	p.R106C		NM_183380	NP_899236	Q03001	DYST_HUMAN	dystonin isoform 1	106	CH 1.|Actin-binding.				cell adhesion|cell cycle arrest|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasmic membrane-bounded vesicle|hemidesmosome|microtubule plus end|nucleus	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein C-terminus binding			ovary(7)|central_nervous_system(6)	13	Lung NSC(77;0.103)									2498				0.317073	73.323537	75.761737	26	56	GG		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)		Missense_Mutation	SNP	56674650	56674650	4967	6	G	A	A	40	40	DST	A	1	1
PTPRZ1	5803	broad.mit.edu	36	7	121423851	121423851	+	Missense_Mutation	SNP	G	C	C			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:121423851G>C	uc003vjy.1	+	c.1108G>C	c.(1108-1110)GAC>CAC	p.D370H	PTPRZ1_uc003vjz.1_Missense_Mutation_p.D370H	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	370	Extracellular (Potential).|Fibronectin type-III.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9														0.228682	176.583583	194.007703	59	199	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	121423851	121423851	13272	7	G	C	C	33	33	PTPRZ1	C	3	3
ZMIZ2	83637	broad.mit.edu	36	7	44763602	44763602	+	Missense_Mutation	SNP	G	C	C			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:44763602G>C	uc003tlr.1	+	c.469G>C	c.(469-471)GCA>CCA	p.A157P	ZMIZ2_uc003tlq.1_Missense_Mutation_p.A125P|ZMIZ2_uc003tls.1_Missense_Mutation_p.A157P|ZMIZ2_uc003tlt.1_5'Flank|ZMIZ2_uc010kyj.1_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	157	Ala-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						NSCLC(20;604 852 1948 16908 50522)								0.357143	8.155868	8.456612	5	9	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	44763602	44763602	18288	7	G	C	C	42	42	ZMIZ2	C	3	3
GRM3	2913	broad.mit.edu	36	7	86253615	86253615	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:86253615G>A	uc003uid.1	+	c.571G>A	c.(571-573)GTG>ATG	p.V191M	GRM3_uc010lef.1_Missense_Mutation_p.V189M|GRM3_uc010leg.1_Missense_Mutation_p.V63M|GRM3_uc010leh.1_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	191	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				ovary(3)|central_nervous_system(2)	5	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GBM(52;969 1098 3139 52280)								0.222591	156.147472	177.39615	67	234	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	86253615	86253615	7077	7	G	A	A	40	40	GRM3	A	1	1
SLCO5A1	81796	broad.mit.edu	36	8	70757047	70757047	+	Missense_Mutation	SNP	A	T	T			TCGA-06-0168-01	TCGA-06-0168-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr8:70757047A>T	uc003xyl.1	-	c.1708T>A	c.(1708-1710)TGT>AGT	p.C570S	SLCO5A1_uc010lzb.1_Missense_Mutation_p.C515S|SLCO5A1_uc003xyk.1_Missense_Mutation_p.C570S	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	570	Extracellular (Potential).|Kazal-like.					integral to membrane|plasma membrane	transporter activity			ovary(3)	3	Breast(64;0.0654)													0.262195	117.746403	126.140153	43	121	AA		KEEP	---	---	---	---	capture	Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)		Missense_Mutation	SNP	70757047	70757047	15228	8	A	T	T	7	7	SLCO5A1	T	4	4
SVEP1	79987	broad.mit.edu	36	9	112209247	112209247	+	Missense_Mutation	SNP	G	C	C			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:112209247G>C	uc010mtz.1	-	c.8454C>G	c.(8452-8454)GAC>GAG	p.D2818E	SVEP1_uc010mty.1_Missense_Mutation_p.D744E	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2818	Sushi 23.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7														0.271739	236.741304	249.75794	75	201	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	112209247	112209247	15940	9	G	C	C	48	48	SVEP1	C	3	3
C9orf66	157983	broad.mit.edu	36	9	204614	204614	+	Silent	SNP	G	T	T			TCGA-06-0168-01	TCGA-06-0168-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:204614G>T	uc003zge.2	-	c.783C>A	c.(781-783)GGC>GGA	p.G261G	DOCK8_uc003zgf.1_5'Flank	NM_152569	NP_689782	Q5T8R8	CI066_HUMAN	hypothetical protein LOC157983	261	Arg-rich.									central_nervous_system(1)	1	all_lung(41;0.218)	all_cancers(5;2.09e-12)|all_epithelial(5;6.16e-09)|all_lung(10;1.15e-08)|Lung NSC(10;1.91e-08)|Acute lymphoblastic leukemia(5;0.00457)|all_hematologic(5;0.0332)|Breast(48;0.0646)|Prostate(43;0.137)												0.265306	31.846586	34.2911	13	36	GG		KEEP	---	---	---	---	capture	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)	Silent	SNP	204614	204614	2606	9	G	T	T	42	42	C9orf66	T	3	3
GPRASP2	114928	broad.mit.edu	36	X	101858859	101858859	+	Silent	SNP	T	C	C			TCGA-06-0168-01	TCGA-06-0168-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chrX:101858859T>C	uc004ejk.1	+	c.2406T>C	c.(2404-2406)GAT>GAC	p.D802D	GPRASP2_uc004ejl.1_Silent_p.D802D|GPRASP2_uc004ejm.1_Silent_p.D802D|GPRASP2_uc010nof.1_Silent_p.D802D	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	802						cytoplasm	protein binding			ovary(1)	1														0.512821	433.701083	433.734467	120	114	TT		KEEP	---	---	---	---	capture			Silent	SNP	101858859	101858859	6999	23	T	C	C	52	52	GPRASP2	C	4	4
SEPT10	151011	broad.mit.edu	36	2	109660911	109660914	+	Splice_Site_Del	DEL	CTTA	-	-			TCGA-06-0168-01	TCGA-06-0168-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:109660911_109660914delCTTA	uc002tey.1	-	c.e10_splice_site			SEPT10_uc002tew.1_Splice_Site_Del|SEPT10_uc002tex.1_Splice_Site_Del|SEPT10_uc002tev.1_Stop_Codon_Del|SEPT10_uc010fjo.1_Splice_Site_Del	NM_144710	NP_653311			septin 10 isoform 1						cell cycle|cell division	septin complex	GTP binding				0												OREG0014878	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0.31			66	149				---	---	---	---	capture_indel			Splice_Site_Del	DEL	109660911	109660914	14546	2	CTTA	-	-	32	32	SEPT10	-	5	5
