Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_normal_best_gt	i_failure_reasons	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context_orig	context65	gene_name	newbase	categ	categ_ignoring_null_categ
SMC3	9126	broad.mit.edu	36	10	112318731	112318731	+	Missense_Mutation	SNP	G	C	C			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr10:112318731G>C	uc001kze.1	+	c.61G>C	c.(61-63)GAT>CAT	p.D21H		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	21					cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)	2		Breast(234;0.0848)|Lung NSC(174;0.238)												0.166667	34.327656	44.459786	16	80	GG		KEEP	---	---	---	---	capture		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)	Missense_Mutation	SNP	112318731	112318731	15282	10	G	C	C	33	33	SMC3	C	3	3
NHLRC2	374354	broad.mit.edu	36	10	115658086	115658086	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr10:115658086G>A	uc001lax.1	+	c.1982G>A	c.(1981-1983)AGT>AAT	p.S661N	NHLRC2_uc001lay.1_Non-coding_Transcript	NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	661					cell redox homeostasis					ovary(1)	1														0.519481	123.293963	123.31905	40	37	GG		KEEP	---	---	---	---	capture		Epithelial(162;0.017)|all cancers(201;0.0187)	Missense_Mutation	SNP	115658086	115658086	10806	10	G	A	A	36	36	NHLRC2	A	2	2
P2RY2	5029	broad.mit.edu	36	11	72623353	72623353	+	Silent	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:72623353C>T	uc001otk.1	+	c.501C>T	c.(499-501)CCC>CCT	p.P167P	P2RY2_uc001otj.1_Silent_p.P167P|P2RY2_uc001otl.1_Silent_p.P167P|P2RY2_uc009ytm.1_Silent_p.P167P	NM_176072	NP_788086	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	167	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)	2					Suramin(DB04786)									0.358974	40.545709	41.225812	14	25	CC		KEEP	---	---	---	---	capture			Silent	SNP	72623353	72623353	11765	11	C	T	T	23	23	P2RY2	T	1	1
ALDH1L2	160428	broad.mit.edu	36	12	103979609	103979609	+	Missense_Mutation	SNP	G	T	T			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:103979609G>T	uc001tlc.1	-	c.973C>A	c.(973-975)CAG>AAG	p.Q325K	ALDH1L2_uc009zuo.1_5'UTR|ALDH1L2_uc009zup.1_Non-coding_Transcript	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	325					10-formyltetrahydrofolate catabolic process|biosynthetic process|oxidation-reduction process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding				0														0.298246	87.500231	91.65138	34	80	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	103979609	103979609	498	12	G	T	T	45	45	ALDH1L2	T	3	3
TRPV4	59341	broad.mit.edu	36	12	108714868	108714868	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:108714868G>A	uc001tpj.1	-	c.1796C>T	c.(1795-1797)ACG>ATG	p.T599M	TRPV4_uc001tpg.1_Missense_Mutation_p.T565M|TRPV4_uc001tph.1_Missense_Mutation_p.T552M|TRPV4_uc001tpi.1_Missense_Mutation_p.T492M|TRPV4_uc001tpk.1_Missense_Mutation_p.T599M|TRPV4_uc001tpl.1_Missense_Mutation_p.T539M	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	599	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)	2														0.265823	51.941991	55.855043	21	58	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	108714868	108714868	17149	12	G	A	A	40	40	TRPV4	A	1	1
DNAH10	196385	broad.mit.edu	36	12	122896582	122896582	+	Silent	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:122896582C>T	uc001uft.2	+	c.5388C>T	c.(5386-5388)TAC>TAT	p.Y1796Y		NM_001083900	NP_001077369	Q8IVF4	DYH10_HUMAN	DNAH10 variant protein (Fragment).	1796	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|central_nervous_system(1)|skin(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)													0.284404	82.715252	87.242501	31	78	CC		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)	Silent	SNP	122896582	122896582	4780	12	C	T	T	19	19	DNAH10	T	1	1
TMTC1	83857	broad.mit.edu	36	12	29677393	29677393	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:29677393G>A	uc001rjb.1	-	c.758C>T	c.(757-759)GCG>GTG	p.A253V	TMTC1_uc001riz.1_Missense_Mutation_p.A10V|TMTC1_uc001rja.1_Missense_Mutation_p.A97V|TMTC1_uc001rjc.1_Missense_Mutation_p.A315V	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	253	Helical; (Potential).					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)													0.219512	60.8674	69.77548	27	96	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	29677393	29677393	16801	12	G	A	A	38	38	TMTC1	A	1	1
BAZ2A	11176	broad.mit.edu	36	12	55291952	55291952	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr12:55291952G>A	uc001slq.1	-	c.1487C>T	c.(1486-1488)TCT>TTT	p.S496F	BAZ2A_uc009zow.1_Missense_Mutation_p.S464F|BAZ2A_uc001slp.1_Missense_Mutation_p.S494F	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	496					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|transcription regulator activity|zinc ion binding				0														0.416667	29.044569	29.190335	10	14	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	55291952	55291952	1352	12	G	A	A	33	33	BAZ2A	A	2	2
SALL2	6297	broad.mit.edu	36	14	21061250	21061250	+	Missense_Mutation	SNP	C	G	G			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr14:21061250C>G	uc001wbe.1	-	c.2452G>C	c.(2452-2454)GCA>CCA	p.A818P	SALL2_uc001wbf.2_Intron|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	818	Poly-Ala.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)													0.291667	12.404067	13.346084	7	17	CC		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(265;0.0151)	Missense_Mutation	SNP	21061250	21061250	14291	14	C	G	G	28	28	SALL2	G	3	3
NYNRIN	57523	broad.mit.edu	36	14	23948140	23948140	+	Missense_Mutation	SNP	C	A	A			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr14:23948140C>A	uc001wpf.2	+	c.1300C>A	c.(1300-1302)CCA>ACA	p.P434T		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	434					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3										473				0.484848	50.5989	50.605474	16	17	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	23948140	23948140	11201	14	C	A	A	18	18	NYNRIN	A	3	3
PLEK2	26499	broad.mit.edu	36	14	66934192	66934192	+	Silent	SNP	G	T	T			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr14:66934192G>T	uc001xjh.1	-	c.147C>A	c.(145-147)GGC>GGA	p.G49G		NM_016445	NP_057529	Q9NYT0	PLEK2_HUMAN	pleckstrin 2	49	PH 1.				actin cytoskeleton organization|intracellular signal transduction	cytoplasm|cytoskeleton|lamellipodium membrane				ovary(1)|pancreas(1)	2														0.302326	35.59236	37.073457	13	30	GG		KEEP	---	---	---	---	capture		all cancers(60;0.000728)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Silent	SNP	66934192	66934192	12480	14	G	T	T	42	42	PLEK2	T	3	3
SGK269	79834	broad.mit.edu	36	15	75260310	75260310	+	Silent	SNP	T	C	C			TCGA-06-0645-01	TCGA-06-0645-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr15:75260310T>C	uc002bcm.2	-	c.1014A>G	c.(1012-1014)TCA>TCG	p.S338S	SGK269_uc002bcn.2_Silent_p.S338S	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	338	Ser-rich.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0										217				0.354331	127.137888	129.513275	45	82	TT		KEEP	---	---	---	---	capture		STAD - Stomach adenocarcinoma(199;0.124)	Silent	SNP	75260310	75260310	14702	15	T	C	C	51	51	SGK269	C	4	4
CHRNB4	1143	broad.mit.edu	36	15	76708927	76708927	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr15:76708927C>T	uc002bed.1	-	c.775G>A	c.(775-777)GAC>AAC	p.D259N	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Missense_Mutation_p.D77N	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	259	Cytoplasmic (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0										152				0.395161	145.350332	146.542561	49	75	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	76708927	76708927	3527	15	C	T	T	31	31	CHRNB4	T	1	1
IQCK	124152	broad.mit.edu	36	16	19637143	19637143	+	Missense_Mutation	SNP	G	C	C			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr16:19637143G>C	uc002dgr.1	+	c.14G>C	c.(13-15)CGG>CCG	p.R5P	IQCK_uc002dgs.1_Non-coding_Transcript|IQCK_uc010bwc.1_Non-coding_Transcript|C16orf88_uc002dgq.1_5'Flank	NM_153208	NP_694940	Q8N0W5	IQCK_HUMAN	IQ motif containing K	5											0														0.333333	10.997353	11.291884	4	8	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	19637143	19637143	8116	16	G	C	C	39	39	IQCK	C	3	3
RHBDL3	162494	broad.mit.edu	36	17	27656544	27656544	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:27656544G>A	uc002hhe.1	+	c.853G>A	c.(853-855)GTC>ATC	p.V285I	RHBDL3_uc010csw.1_Missense_Mutation_p.V277I|RHBDL3_uc010csx.1_Intron|RHBDL3_uc010csy.1_Missense_Mutation_p.V187I|RHBDL3_uc002hhf.1_Missense_Mutation_p.V187I	NM_138328	NP_612201	P58872	RHBL3_HUMAN	rhomboid, veinlet-like 3	285	Helical; (Potential).					integral to membrane	calcium ion binding|serine-type endopeptidase activity			ovary(1)	1		Breast(31;0.116)|Ovarian(249;0.182)												0.375723	171.715583	174.066101	65	108	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	27656544	27656544	13798	17	G	A	A	40	40	RHBDL3	A	1	1
ODF4	146852	broad.mit.edu	36	17	8184275	8184275	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr17:8184275C>T	uc002gle.1	+	c.181C>T	c.(181-183)CGC>TGC	p.R61C		NM_153007	NP_694552	Q2M2E3	ODFP4_HUMAN	outer dense fiber of sperm tails 4	61					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)	1														0.545455	71.788031	71.865901	24	20	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	8184275	8184275	11238	17	C	T	T	27	27	ODF4	T	1	1
PODNL1	79883	broad.mit.edu	36	19	13907600	13907600	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:13907600G>A	uc002mxr.1	-	c.449C>T	c.(448-450)GCG>GTG	p.A150V	PODNL1_uc002mxs.1_Intron	NM_024825	NP_079101	Q6PEZ8	PONL1_HUMAN	podocan-like 1	150	Leu-rich.|LRR 4.					proteinaceous extracellular matrix				central_nervous_system(1)	1														0.216216	17.979688	20.729058	8	29	GG		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(19;5.26e-23)		Missense_Mutation	SNP	13907600	13907600	12607	19	G	A	A	38	38	PODNL1	A	1	1
EMR2	30817	broad.mit.edu	36	19	14718101	14718101	+	Missense_Mutation	SNP	A	C	C			TCGA-06-0645-01	TCGA-06-0645-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr19:14718101A>C	uc002mzp.1	-	c.2126T>G	c.(2125-2127)ATT>AGT	p.I709S	EMR2_uc010dzs.1_Missense_Mutation_p.I168S|EMR2_uc002mzo.1_Missense_Mutation_p.I698S|EMR2_uc002mzq.1_Missense_Mutation_p.I649S|EMR2_uc002mzr.1_Missense_Mutation_p.I660S|EMR2_uc002mzs.1_Missense_Mutation_p.I567S|EMR2_uc002mzt.1_Missense_Mutation_p.I605S|EMR2_uc002mzu.1_Missense_Mutation_p.I616S	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	709	Cytoplasmic (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)	1														0.255319	205.875599	221.183548	72	210	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	14718101	14718101	5298	19	A	C	C	4	4	EMR2	C	4	4
CPAMD8	27151	broad.mit.edu	36	19	16947872	16947872	+	Silent	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:16947872G>A	uc002nfb.1	-	c.1989C>T	c.(1987-1989)GTC>GTT	p.V663V		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	616						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)	12									p.V663V(SNU869-Tumor)	1067				0.234568	44.68921	49.906704	19	62	GG		KEEP	---	---	---	---	capture			Silent	SNP	16947872	16947872	3933	19	G	A	A	37	37	CPAMD8	A	1	1
DMKN	93099	broad.mit.edu	36	19	40694210	40694210	+	Silent	SNP	A	G	G			TCGA-06-0645-01	TCGA-06-0645-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr19:40694210A>G	uc002nzm.2	-	c.861T>C	c.(859-861)GGT>GGC	p.G287G	DMKN_uc002nzj.1_5'Flank|DMKN_uc002nzk.2_5'Flank|DMKN_uc002nzl.2_5'Flank|DMKN_uc002nzo.2_Intron|DMKN_uc002nzn.2_Intron|DMKN_uc002nzw.2_5'Flank|DMKN_uc002nzr.2_5'Flank|DMKN_uc002nzp.2_5'Flank|DMKN_uc002nzq.2_5'Flank|DMKN_uc002nzt.2_5'Flank|DMKN_uc002nzs.2_5'Flank|DMKN_uc002nzu.2_5'Flank|DMKN_uc002nzv.2_5'Flank|DMKN_uc002nzx.2_5'Flank|DMKN_uc002nzy.2_5'Flank|DMKN_uc002nzz.1_Non-coding_Transcript|DMKN_uc002oac.2_Silent_p.G287G|DMKN_uc010eeb.1_Silent_p.G287G|DMKN_uc002oaa.2_Silent_p.G287G|DMKN_uc002oab.2_Silent_p.G287G	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor	287	Gly-rich.					extracellular region		p.S274_S290del(1)		large_intestine(1)|ovary(1)	2	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)													0.428571	7.222815	7.254095	3	4	AA		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(66;0.0724)		Silent	SNP	40694210	40694210	4762	19	A	G	G	6	6	DMKN	G	4	4
ZFP30	22835	broad.mit.edu	36	19	42818308	42818308	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:42818308G>A	uc002ogv.1	-	c.974C>T	c.(973-975)CCC>CTC	p.P325L	ZFP30_uc002ogw.1_Missense_Mutation_p.P325L|ZFP30_uc002ogx.1_Missense_Mutation_p.P325L	NM_014898	NP_055713	Q9Y2G7	ZFP30_HUMAN	zinc finger protein 30 homolog	325					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0														0.219512	87.113496	98.996442	36	128	GG		KEEP	---	---	---	---	capture	COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)		Missense_Mutation	SNP	42818308	42818308	18232	19	G	A	A	43	43	ZFP30	A	2	2
MAP4K1	11184	broad.mit.edu	36	19	43778123	43778123	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:43778123C>T	uc002oix.1	-	c.2266G>A	c.(2266-2268)GTG>ATG	p.V756M	MAP4K1_uc002oiw.1_Missense_Mutation_p.V343M|MAP4K1_uc002oiy.1_Missense_Mutation_p.V756M	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	756	CNH.				activation of JUN kinase activity|activation of MAPKKK activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)	7	all_cancers(60;6.42e-06)|Ovarian(47;0.103)									518				0.181818	46.432372	58.983342	24	108	CC		KEEP	---	---	---	---	capture	Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Missense_Mutation	SNP	43778123	43778123	9642	19	C	T	T	19	19	MAP4K1	T	1	1
CEACAM16	388551	broad.mit.edu	36	19	49898711	49898711	+	Missense_Mutation	SNP	G	C	C			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:49898711G>C	uc002ozq.1	+	c.467G>C	c.(466-468)GGC>GCC	p.G156A		NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	97										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)												0.235294	8.493003	9.581857	4	13	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	49898711	49898711	3321	19	G	C	C	42	42	CEACAM16	C	3	3
LILRA1	11024	broad.mit.edu	36	19	59799494	59799494	+	Silent	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:59799494G>A	uc002qgh.1	+	c.987G>A	c.(985-987)TCG>TCA	p.S329S		NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	329	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			ovary(1)	1														0.246753	45.299923	49.791477	19	58	GG		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(193;0.0348)	Silent	SNP	59799494	59799494	9110	19	G	A	A	39	39	LILRA1	A	1	1
NLRP8	126205	broad.mit.edu	36	19	61158290	61158290	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:61158290G>A	uc002qmh.1	+	c.1054G>A	c.(1054-1056)GTA>ATA	p.V352I	NLRP8_uc010etg.1_Missense_Mutation_p.V352I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	352	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|large_intestine(1)|kidney(1)|skin(1)	10		Colorectal(82;0.000147)|Ovarian(87;0.17)												0.26943	133.816903	143.074095	52	141	GG		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(193;0.0695)	Missense_Mutation	SNP	61158290	61158290	10886	19	G	A	A	40	40	NLRP8	A	1	1
KPRP	448834	broad.mit.edu	36	1	150999353	150999353	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:150999353G>A	uc001fal.1	+	c.665G>A	c.(664-666)CGG>CAG	p.R222Q	KPRP_uc009wnn.1_Missense_Mutation_p.R222Q	NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	222						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)													0.366972	237.922312	241.280962	80	138	GG		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(543;0.206)		Missense_Mutation	SNP	150999353	150999353	8751	1	G	A	A	39	39	KPRP	A	1	1
KIAA1751	85452	broad.mit.edu	36	1	1877986	1877986	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:1877986G>A	uc009vkz.1	-	c.1949C>T	c.(1948-1950)ACG>ATG	p.T650M	KIAA1751_uc001aim.1_Missense_Mutation_p.T650M	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	650										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)												0.303571	44.258757	46.184371	17	39	GG		KEEP	---	---	---	---	capture		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)	Missense_Mutation	SNP	1877986	1877986	8567	1	G	A	A	40	40	KIAA1751	A	1	1
TAS1R2	80834	broad.mit.edu	36	1	19039180	19039180	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:19039180G>A	uc001bba.1	-	c.2020C>T	c.(2020-2022)CGC>TGC	p.R674C		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2	674	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	integral to membrane|plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)			Aspartame(DB00168)									0.309446	266.31068	276.189206	95	212	GG		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Missense_Mutation	SNP	19039180	19039180	16085	1	G	A	A	39	39	TAS1R2	A	1	1
GRHL3	57822	broad.mit.edu	36	1	24530516	24530516	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:24530516C>T	uc001biy.1	+	c.46C>T	c.(46-48)CGG>TGG	p.R16W	GRHL3_uc001bix.1_Missense_Mutation_p.R11W|GRHL3_uc001biz.1_Intron	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	11					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)												0.337349	77.285845	79.222356	28	55	CC		KEEP	---	---	---	---	capture		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)	Missense_Mutation	SNP	24530516	24530516	7043	1	C	T	T	27	27	GRHL3	T	1	1
OR2L8	391190	broad.mit.edu	36	1	246179119	246179119	+	Missense_Mutation	SNP	C	A	A			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:246179119C>A	uc001idt.1	+	c.337C>A	c.(337-339)CTT>ATT	p.L113I	OR2L13_uc001ids.1_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)													0.344214	329.10055	336.322969	116	221	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(106;0.0152)		Missense_Mutation	SNP	246179119	246179119	11415	1	C	A	A	20	20	OR2L8	A	3	3
CASS4	57091	broad.mit.edu	36	20	54461279	54461279	+	Missense_Mutation	SNP	T	C	C			TCGA-06-0645-01	TCGA-06-0645-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr20:54461279T>C	uc002xxp.1	+	c.1640T>C	c.(1639-1641)CTT>CCT	p.L547P	CASS4_uc002xxq.2_Missense_Mutation_p.L547P|CASS4_uc002xxr.1_Missense_Mutation_p.L547P|CASS4_uc010gio.1_Intron	NM_020356	NP_065089	Q9NQ75	CASS4_HUMAN	HEF-like protein	547					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)	2														0.459016	191.291788	191.469842	56	66	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	54461279	54461279	2802	20	T	C	C	56	56	CASS4	C	4	4
TMPRSS15	5651	broad.mit.edu	36	21	18666441	18666441	+	Missense_Mutation	SNP	A	T	T			TCGA-06-0645-01	TCGA-06-0645-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr21:18666441A>T	uc002ykw.1	-	c.604T>A	c.(604-606)TTA>ATA	p.L202I		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	202	Extracellular (Potential).|LDL-receptor class A 1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|breast(1)	6														0.241758	50.90183	56.439708	22	69	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	18666441	18666441	16787	21	A	T	T	1	1	TMPRSS15	T	4	4
ICOSLG	23308	broad.mit.edu	36	21	44479715	44479715	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr21:44479715C>T	uc010gpp.1	-	c.565G>A	c.(565-567)GTC>ATC	p.V189I	ICOSLG_uc002zee.1_Missense_Mutation_p.V189I|ICOSLG_uc002zef.1_Missense_Mutation_p.V72I	NM_015259	NP_056074	O75144	ICOSL_HUMAN	inducible T-cell co-stimulator ligand	189	Extracellular (Potential).|Ig-like C2-type.				B cell activation|defense response|hyperosmotic response|positive regulation of activated T cell proliferation|signal transduction|T cell activation|T cell costimulation		receptor binding				0														0.157895	10.02775	14.267362	6	32	CC		KEEP	---	---	---	---	capture		Colorectal(79;0.0163)|READ - Rectum adenocarcinoma(84;0.0772)	Missense_Mutation	SNP	44479715	44479715	7787	21	C	T	T	19	19	ICOSLG	T	1	1
SLC35F5	80255	broad.mit.edu	36	2	114205695	114205695	+	Missense_Mutation	SNP	G	T	T			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:114205695G>T	uc002tku.1	-	c.921C>A	c.(919-921)AGC>AGA	p.S307R	SLC35F5_uc002tkt.1_Non-coding_Transcript	NM_025181	NP_079457	Q8WV83	S35F5_HUMAN	solute carrier family 35, member F5	307	DUF6.|Helical; (Potential).				transport	integral to membrane					0														0.284024	128.327968	135.406982	48	121	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	114205695	114205695	15089	2	G	T	T	46	46	SLC35F5	T	3	3
GCA	25801	broad.mit.edu	36	2	162912447	162912447	+	Silent	SNP	T	C	C			TCGA-06-0645-01	TCGA-06-0645-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr2:162912447T>C	uc002ucg.1	+	c.141T>C	c.(139-141)TAT>TAC	p.Y47Y		NM_012198	NP_036330	P28676	GRAN_HUMAN	grancalcin, EF-hand calcium binding protein	47					cellular membrane fusion	cytoplasm|plasma membrane	calcium ion binding|protein homodimerization activity				0														0.302632	70.99827	73.639687	23	53	TT		KEEP	---	---	---	---	capture			Silent	SNP	162912447	162912447	6549	2	T	C	C	52	52	GCA	C	4	4
ITGA4	3676	broad.mit.edu	36	2	182082760	182082760	+	Missense_Mutation	SNP	A	C	C			TCGA-06-0645-01	TCGA-06-0645-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr2:182082760A>C	uc002unu.1	+	c.1826A>C	c.(1825-1827)AAA>ACA	p.K609T	ITGA4_uc010frj.1_Missense_Mutation_p.K91T	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	609	SG1.|Extracellular (Potential).				B cell differentiation|blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6					Natalizumab(DB00108)									0.302632	70.998102	73.639604	23	53	AA		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Missense_Mutation	SNP	182082760	182082760	8182	2	A	C	C	1	1	ITGA4	C	4	4
COL4A4	1286	broad.mit.edu	36	2	227632439	227632439	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:227632439G>A	uc010fxd.1	-	c.2309C>T	c.(2308-2310)CCG>CTG	p.P770L	COL4A4_uc010fxe.1_Missense_Mutation_p.P770L	NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	770	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|breast(1)|pancreas(1)	10		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)												0.347656	262.926102	268.157238	89	167	GG		KEEP	---	---	---	---	capture		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)	Missense_Mutation	SNP	227632439	227632439	3831	2	G	A	A	39	39	COL4A4	A	1	1
DHX30	22907	broad.mit.edu	36	3	47865014	47865014	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr3:47865014G>A	uc003cru.1	+	c.2545G>A	c.(2545-2547)GAC>AAC	p.D849N	DHX30_uc003crt.1_Missense_Mutation_p.D810N	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	849						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(2)|skin(2)	4														0.325301	145.785604	150.284782	54	112	GG		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)	Missense_Mutation	SNP	47865014	47865014	4683	3	G	A	A	41	41	DHX30	A	2	2
IFRD2	7866	broad.mit.edu	36	3	50302471	50302471	+	Missense_Mutation	SNP	C	G	G			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr3:50302471C>G	uc003czb.1	-	c.937G>C	c.(937-939)GTG>CTG	p.V313L	IFRD2_uc003cza.1_Missense_Mutation_p.V147L	NM_006764	NP_006755	Q12894	IFRD2_HUMAN	interferon-related developmental regulator 2	211							binding			ovary(1)|lung(1)	2														0.4	46.156594	46.458283	14	21	CC		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)	Missense_Mutation	SNP	50302471	50302471	7855	3	C	G	G	19	19	IFRD2	G	3	3
GPR15	2838	broad.mit.edu	36	3	99734357	99734357	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr3:99734357G>A	uc003dsw.1	+	c.790G>A	c.(790-792)GCC>ACC	p.A264T		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	264	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)												0.27619	71.826008	76.564448	29	76	GG		KEEP	---	---	---	---	capture		Lung(72;0.246)	Missense_Mutation	SNP	99734357	99734357	6930	3	G	A	A	42	42	GPR15	A	2	2
ALPK1	80216	broad.mit.edu	36	4	113571069	113571069	+	Missense_Mutation	SNP	G	T	T			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:113571069G>T	uc003ian.2	+	c.917G>T	c.(916-918)TGT>TTT	p.C306F	ALPK1_uc003iap.2_Missense_Mutation_p.C306F|ALPK1_uc003iao.2_Intron|ALPK1_uc010imo.1_Missense_Mutation_p.C134F	NM_001102406	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	306					protein phosphorylation		ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)								252				0.22619	46.979984	52.763311	19	65	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(123;0.00325)	Missense_Mutation	SNP	113571069	113571069	547	4	G	T	T	48	48	ALPK1	T	3	3
PRSS48	345062	broad.mit.edu	36	4	152422814	152422814	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:152422814C>T	uc003img.1	+	c.280C>T	c.(280-282)CGT>TGT	p.R94C	PRSS48_uc010ipn.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	94	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1														0.251724	180.342615	196.581147	73	217	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	152422814	152422814	13081	4	C	T	T	19	19	PRSS48	T	1	1
FRAS1	80144	broad.mit.edu	36	4	79585706	79585706	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:79585706G>A	uc003hkx.2	+	c.5669G>A	c.(5668-5670)CGT>CAT	p.R1890H	FRAS1_uc003hkw.2_Missense_Mutation_p.R1891H|FRAS1_uc010ijj.1_Missense_Mutation_p.R311H|FRAS1_uc003hlb.1_Missense_Mutation_p.R112H	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1890	CSPG 7.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5														0.308824	54.458979	56.668841	21	47	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	79585706	79585706	6288	4	G	A	A	40	40	FRAS1	A	1	1
CPZ	8532	broad.mit.edu	36	4	8656706	8656706	+	Silent	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:8656706G>A	uc003glm.1	+	c.600G>A	c.(598-600)ACG>ACA	p.T200T	CPZ_uc003gll.1_Non-coding_Transcript|CPZ_uc003glo.1_Silent_p.T189T|CPZ_uc003gln.1_Silent_p.T63T|CPZ_uc003glp.1_Non-coding_Transcript	NM_001014447	NP_001014448	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	200				T -> M (in Ref. 4; BC006393).	proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3														0.216216	19.280817	22.028969	8	29	GG		KEEP	---	---	---	---	capture			Silent	SNP	8656706	8656706	3978	4	G	A	A	39	39	CPZ	A	1	1
FGF18	8817	broad.mit.edu	36	5	170816368	170816368	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:170816368C>T	uc003mbk.1	+	c.578C>T	c.(577-579)ACG>ATG	p.T193M		NM_003862	NP_003853	O76093	FGF18_HUMAN	fibroblast growth factor 18 precursor	193					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell proliferation	extracellular space|nucleolus	growth factor activity|type 1 fibroblast growth factor receptor binding|type 2 fibroblast growth factor receptor binding				0	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)												0.212963	50.075259	58.292339	23	85	CC		KEEP	---	---	---	---	capture	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)		Missense_Mutation	SNP	170816368	170816368	6083	5	C	T	T	19	19	FGF18	T	1	1
PLCXD3	345557	broad.mit.edu	36	5	41417978	41417978	+	Silent	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:41417978C>T	uc003jmm.1	-	c.519G>A	c.(517-519)GCG>GCA	p.A173A		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	173	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	4														0.161049	80.057595	109.24607	43	224	CC		KEEP	---	---	---	---	capture			Silent	SNP	41417978	41417978	12469	5	C	T	T	31	31	PLCXD3	T	1	1
ESR1	2099	broad.mit.edu	36	6	152307176	152307176	+	Silent	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:152307176C>T	uc010kio.1	+	c.942C>T	c.(940-942)GCC>GCT	p.A314A	ESR1_uc003qom.2_Silent_p.A312A|ESR1_uc010kin.1_Silent_p.A312A|ESR1_uc010kip.1_Silent_p.A311A|ESR1_uc003qon.2_Silent_p.A312A|ESR1_uc003qoo.2_Silent_p.A312A|ESR1_uc010kiq.1_Intron|ESR1_uc010kir.1_Intron|ESR1_uc010kis.1_Intron|ESR1_uc010kit.1_Silent_p.A49A	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	312	Steroid-binding.|Interaction with AKAP13.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding	p.A312A(1)		central_nervous_system(2)	2		Ovarian(120;0.0448)			Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)					249				0.28777	110.855752	116.462585	40	99	CC		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Silent	SNP	152307176	152307176	5449	6	C	T	T	23	23	ESR1	T	1	1
MUC17	140453	broad.mit.edu	36	7	100461608	100461608	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:100461608C>T	uc003uxp.1	+	c.191C>T	c.(190-192)GCG>GTG	p.A64V	MUC17_uc010lho.1_Non-coding_Transcript	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17	64	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|breast(3)|lung(2)	19	Lung NSC(181;0.136)|all_lung(186;0.182)													0.133929	17.840576	32.413123	15	97	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	100461608	100461608	10368	7	C	T	T	27	27	MUC17	T	1	1
TAS2R41	259287	broad.mit.edu	36	7	142885104	142885104	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:142885104C>T	uc003wdc.1	+	c.17C>T	c.(16-18)ACG>ATG	p.T6M		NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	6	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)	1	Melanoma(164;0.15)													0.208556	85.315961	100.035374	39	148	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	142885104	142885104	16101	7	C	T	T	19	19	TAS2R41	T	1	1
TAS2R41	259287	broad.mit.edu	36	7	142885958	142885958	+	Nonsense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:142885958C>T	uc003wdc.1	+	c.871C>T	c.(871-873)CGA>TGA	p.R291*		NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	291	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)	1	Melanoma(164;0.15)													0.185185	41.546063	51.575727	20	88	CC		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	142885958	142885958	16101	7	C	T	T	31	31	TAS2R41	T	5	1
ADAM22	53616	broad.mit.edu	36	7	87633090	87633090	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:87633090G>A	uc003ujp.1	+	c.2240G>A	c.(2239-2241)AGT>AAT	p.S747N	ADAM22_uc003ujk.1_Missense_Mutation_p.S695N|ADAM22_uc003ujl.1_Missense_Mutation_p.S695N|ADAM22_uc003ujn.1_Missense_Mutation_p.S695N|ADAM22_uc003ujm.1_Missense_Mutation_p.S695N|ADAM22_uc003ujo.1_Missense_Mutation_p.S695N	NM_004194	NP_004185	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 4	695	EGF-like.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)									704				0.164286	46.731372	61.717449	23	117	GG		KEEP	---	---	---	---	capture	STAD - Stomach adenocarcinoma(171;0.215)		Missense_Mutation	SNP	87633090	87633090	245	7	G	A	A	36	36	ADAM22	A	2	2
ZNF3	7551	broad.mit.edu	36	7	99510706	99510706	+	Missense_Mutation	SNP	C	G	G			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr7:99510706C>G	uc003usq.1	-	c.259G>C	c.(259-261)GTG>CTG	p.V87L	ZNF3_uc003usp.1_Missense_Mutation_p.V87L|ZNF3_uc010lgj.1_Missense_Mutation_p.V51L|ZNF3_uc003usr.1_Missense_Mutation_p.V87L|ZNF3_uc003uss.1_Missense_Mutation_p.V94L|ZNF3_uc003ust.2_Missense_Mutation_p.V87L	NM_032924	NP_116313	P17036	ZNF3_HUMAN	zinc finger protein 3 isoform 2	87	KRAB.				cell differentiation|leukocyte activation|multicellular organismal development|regulation of transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)	Ovarian(593;2.06e-05)|Myeloproliferative disorder(862;0.0122)|Breast(660;0.029)												0.174658	115.33372	144.507339	51	241	CC		KEEP	---	---	---	---	capture	STAD - Stomach adenocarcinoma(171;0.129)		Missense_Mutation	SNP	99510706	99510706	18421	7	C	G	G	17	17	ZNF3	G	3	3
PKHD1L1	93035	broad.mit.edu	36	8	110545900	110545900	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr8:110545900G>A	uc003yne.1	+	c.7663G>A	c.(7663-7665)GAT>AAT	p.D2555N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L	2555	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14														0.275362	48.287715	51.428825	19	50	GG		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)		Missense_Mutation	SNP	110545900	110545900	12397	8	G	A	A	45	45	PKHD1L1	A	2	2
SLC45A4	57210	broad.mit.edu	36	8	142299027	142299027	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr8:142299027C>T	uc003ywd.1	-	c.361G>A	c.(361-363)GCC>ACC	p.A121T	SLC45A4_uc003ywc.1_Missense_Mutation_p.A121T|SLC45A4_uc010meq.1_Missense_Mutation_p.A119T	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	172	Helical; (Potential).				transmembrane transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)													0.26087	14.443408	15.63157	6	17	CC		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(115;0.0493)		Missense_Mutation	SNP	142299027	142299027	15140	8	C	T	T	27	27	SLC45A4	T	1	1
KCNB2	9312	broad.mit.edu	36	8	74011607	74011607	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr8:74011607C>T	uc003xzb.1	+	c.1463C>T	c.(1462-1464)TCG>TTG	p.S488L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	488	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4	Breast(64;0.137)													0.310559	132.396531	137.54064	50	111	CC		KEEP	---	---	---	---	capture	Epithelial(68;0.105)		Missense_Mutation	SNP	74011607	74011607	8318	8	C	T	T	31	31	KCNB2	T	1	1
KIAA1429	25962	broad.mit.edu	36	8	95616319	95616319	+	Silent	SNP	T	C	C			TCGA-06-0645-01	TCGA-06-0645-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr8:95616319T>C	uc003ygo.1	-	c.408A>G	c.(406-408)AGA>AGG	p.R136R	KIAA1429_uc003ygp.1_Silent_p.R136R	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	136					mRNA processing|RNA splicing	nucleus				ovary(1)	1	Breast(36;3.29e-05)													0.296875	49.09543	51.459854	19	45	TT		KEEP	---	---	---	---	capture	BRCA - Breast invasive adenocarcinoma(8;0.00185)		Silent	SNP	95616319	95616319	8540	8	T	C	C	54	54	KIAA1429	C	4	4
CYLC2	1539	broad.mit.edu	36	9	104807625	104807625	+	Silent	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:104807625G>A	uc004bbs.1	+	c.891G>A	c.(889-891)ACG>ACA	p.T297T		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	297	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)												0.24	15.037197	16.579892	6	19	GG		KEEP	---	---	---	---	capture			Silent	SNP	104807625	104807625	4307	9	G	A	A	37	37	CYLC2	A	1	1
FAM70A	55026	broad.mit.edu	36	X	119294861	119294861	+	Silent	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:119294861G>A	uc004eso.2	-	c.654C>T	c.(652-654)CTC>CTT	p.L218L	FAM70A_uc004esp.2_Silent_p.L194L|FAM70A_uc010nqo.1_Intron	NM_017938	NP_060408	Q5JRV8	FA70A_HUMAN	hypothetical protein LOC55026 isoform 1	218						integral to membrane				lung(1)|breast(1)	2														0.282297	152.631608	161.534752	59	150	GG		KEEP	---	---	---	---	capture			Silent	SNP	119294861	119294861	5828	23	G	A	A	33	33	FAM70A	A	2	2
SAGE1	55511	broad.mit.edu	36	X	134814345	134814345	+	Silent	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:134814345C>T	uc004ezh.1	+	c.264C>T	c.(262-264)AAC>AAT	p.N88N	SAGE1_uc010nry.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	88										ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)													0.273196	126.479373	135.48438	53	141	CC		KEEP	---	---	---	---	capture			Silent	SNP	134814345	134814345	14289	23	C	T	T	19	19	SAGE1	T	1	1
GPR112	139378	broad.mit.edu	36	X	135258459	135258459	+	Missense_Mutation	SNP	C	T	T			TCGA-06-0645-01	TCGA-06-0645-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chrX:135258459C>T	uc004ezu.1	+	c.4928C>T	c.(4927-4929)ACG>ATG	p.T1643M	GPR112_uc010nsb.1_Missense_Mutation_p.T1438M|GPR112_uc010nsc.1_Missense_Mutation_p.T1410M	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1643	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	11	Acute lymphoblastic leukemia(192;0.000127)									487				0.342105	322.974777	330.506561	117	225	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	135258459	135258459	6903	23	C	T	T	19	19	GPR112	T	1	1
DNASE1L1	1774	broad.mit.edu	36	X	153287046	153287046	+	Missense_Mutation	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:153287046G>A	uc004fks.1	-	c.58C>T	c.(58-60)CGC>TGC	p.R20C	DNASE1L1_uc004fkt.1_Missense_Mutation_p.R20C|DNASE1L1_uc004fku.1_Missense_Mutation_p.R20C|DNASE1L1_uc004fkv.1_Missense_Mutation_p.R20C|DNASE1L1_uc004fkw.1_Missense_Mutation_p.R20C	NM_006730	NP_006721	P49184	DNSL1_HUMAN	deoxyribonuclease I-like 1 precursor	20					DNA catabolic process	endoplasmic reticulum	DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)													0.27907	30.880212	32.768818	12	31	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	153287046	153287046	4844	23	G	A	A	37	37	DNASE1L1	A	1	1
MAGEB6	158809	broad.mit.edu	36	X	26122493	26122493	+	Silent	SNP	G	A	A			TCGA-06-0645-01	TCGA-06-0645-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:26122493G>A	uc004dbr.1	+	c.609G>A	c.(607-609)GCG>GCA	p.A203A	MAGEB6_uc010ngc.1_5'UTR|MAGEB6_uc010ngd.1_Silent_p.A203A	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	203	MAGE.									ovary(3)	3														0.391753	111.436759	112.428345	38	59	GG		KEEP	---	---	---	---	capture			Silent	SNP	26122493	26122493	9560	23	G	A	A	38	38	MAGEB6	A	1	1
KRTAP5-5	439915	broad.mit.edu	36	11	1607767	1607775	+	In_Frame_Del	DEL	GGCTGTGGA	-	-			TCGA-06-0645-01	TCGA-06-0645-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:1607767_1607775delGGCTGTGGA	uc001lty.1	+	c.121_129delGGCTGTGGA	c.(121-129)GGCTGTGGAdel	p.GCG47del		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	47_49						keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)										0.39			16	25				---	---	---	---	capture_indel			In_Frame_Del	DEL	1607767	1607775	8886	11	GGCTGTGGA	-	-	39	39	KRTAP5-5	-	5	5
C21orf58	54058	broad.mit.edu	36	21	46546413	46546414	+	In_Frame_Ins	INS	-	TGG	TGG			TCGA-06-0645-01	TCGA-06-0645-01										Phase_I	Unspecified				Illumina GAIIx	g.chr21:46546413_46546414insTGG	uc002zjf.1	-	c.896_897insCCA	c.(895-897)CAT>CACCAT	p.299_299H>HH	C21orf58_uc002ziz.2_Intron|C21orf58_uc002zja.2_In_Frame_Ins_p.193_193H>HH|C21orf58_uc002zjc.1_In_Frame_Ins_p.193_193H>HH|C21orf58_uc010gqj.1_Non-coding_Transcript	NM_058180	NP_478060	P58505	CU058_HUMAN	hypothetical protein LOC54058	299	Poly-His.									pancreas(1)	1	Breast(49;0.112)			Colorectal(79;0.239)										0.50			3	3				---	---	---	---	capture_indel			In_Frame_Ins	INS	46546413	46546414	2209	21	-	TGG	TGG	8	8	C21orf58	TGG	5	5
CCDC136	64753	broad.mit.edu	36	7	128221703	128221705	+	In_Frame_Del	DEL	GAA	-	-			TCGA-06-0645-01	TCGA-06-0645-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:128221703_128221705delGAA	uc003vnv.1	+	c.82_84delGAA	c.(82-84)GAAdel	p.E32del	CCDC136_uc003vnu.1_In_Frame_Del_p.E82del|CCDC136_uc003vnw.1_In_Frame_Del_p.E32del	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	32	Glu-rich.					integral to membrane	protein binding			ovary(2)	2														0.33			2	4				---	---	---	---	capture_indel			In_Frame_Del	DEL	128221703	128221705	2890	7	GAA	-	-	41	41	CCDC136	-	5	5
