Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TP53	7157	genome.wustl.edu	36	17	7519259	7519259	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7519259	7519259	TP53	17	C	C	A	32
ENO1	2023	genome.wustl.edu	36	1	8846605	8846605	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	8846605	8846605	ENO1	1	G	G	A	40
SLC2A9	56606	genome.wustl.edu	36	4	9596452	9596452	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	9596452	9596452	SLC2A9	4	C	C	T	27
THSD7A	221981	genome.wustl.edu	36	7	11642346	11642346	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	11642346	11642346	THSD7A	7	G	G	A	47
PRAMEF4	400735	genome.wustl.edu	36	1	12864794	12864794	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	12864794	12864794	PRAMEF4	1	A	A	G	7
MAST3	23031	genome.wustl.edu	36	19	18115610	18115610	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	18115610	18115610	MAST3	19	T	T	A	58
HRH4	59340	genome.wustl.edu	36	18	20311168	20311168	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20311168	20311168	HRH4	18	G	G	T	46
MBTPS2	51360	genome.wustl.edu	36	X	21771329	21771329	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	21771329	21771329	MBTPS2	23	C	C	T	19
HS3ST2	9956	genome.wustl.edu	36	16	22833913	22833913	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	22833913	22833913	HS3ST2	16	C	C	T	21
SPACA3	124912	genome.wustl.edu	36	17	28346653	28346653	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	28346653	28346653	SPACA3	17	G	G	A	46
DLGAP4	22839	genome.wustl.edu	36	20	34494244	34494244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	34494244	34494244	DLGAP4	20	G	G	T	34
NDUFAF1	51103	genome.wustl.edu	36	15	39474438	39474438	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	39474438	39474438	NDUFAF1	15	T	T	G	63
ADAMTS20	80070	genome.wustl.edu	36	12	42103950	42103950	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	42103950	42103950	ADAMTS20	12	C	C	G	17
LRRC46	90506	genome.wustl.edu	36	17	43267764	43267764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	43267764	43267764	LRRC46	17	G	G	A	39
KIAA0467	23334	genome.wustl.edu	36	1	43664194	43664194	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	43664194	43664194	KIAA0467	1	G	G	A	37
ADCY1	107	genome.wustl.edu	36	7	45684099	45684099	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	45684099	45684099	ADCY1	7	G	G	A	38
PSG11	5680	genome.wustl.edu	36	19	48211161	48211161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48211161	48211161	PSG11	19	C	C	T	19
PLXNB1	5364	genome.wustl.edu	36	3	48429549	48429549	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48429549	48429549	PLXNB1	3	C	C	A	32
COL7A1	1294	genome.wustl.edu	36	3	48598288	48598288	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48598288	48598288	COL7A1	3	C	C	A	32
ZFYVE9	9372	genome.wustl.edu	36	1	52584418	52584418	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	52584418	52584418	ZFYVE9	1	C	C	G	26
LIPC	3990	genome.wustl.edu	36	15	56617868	56617868	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	56617868	56617868	LIPC	15	C	C	T	28
CDH3	1001	genome.wustl.edu	36	16	67276041	67276041	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	67276041	67276041	CDH3	16	G	G	A	37
LRRC49	54839	genome.wustl.edu	36	15	69016209	69016209	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	69016209	69016209	LRRC49	15	T	T	G	49
ARR3	407	genome.wustl.edu	36	X	69413276	69413276	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	69413276	69413276	ARR3	23	C	C	T	32
GPRC5C	55890	genome.wustl.edu	36	17	69948051	69948051	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	69948051	69948051	GPRC5C	17	C	C	T	31
MYO7A	4647	genome.wustl.edu	36	11	76548208	76548208	+	Silent	SNP	C	G	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	76548208	76548208	MYO7A	11	C	G	G	22
NTRK2	4915	genome.wustl.edu	36	9	86760151	86760151	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	86760151	86760151	NTRK2	9	C	C	T	23
CPSF2	53981	genome.wustl.edu	36	14	91697797	91697797	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	91697797	91697797	CPSF2	14	T	T	G	61
LGI1	9211	genome.wustl.edu	36	10	95543049	95543049	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	95543049	95543049	LGI1	10	G	G	C	45
ENSG00000211953	0	genome.wustl.edu	36	14	105862454	105862454	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	105862454	105862454	ENSG00000211953	14	A	A	T	6
PPP1R3A	5506	genome.wustl.edu	36	7	113346185	113346185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	113346185	113346185	PPP1R3A	7	G	G	A	44
LOC653052	653052	genome.wustl.edu	36	7	139063067	139063067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	139063067	139063067	LOC653052	7	C	C	T	19
CYP11B1	1584	genome.wustl.edu	36	8	143957893	143957893	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	143957893	143957893	CYP11B1	8	C	C	T	23
UTRN	7402	genome.wustl.edu	36	6	144848293	144848293	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	144848293	144848293	UTRN	6	T	T	G	51
APH1A	51107	genome.wustl.edu	36	1	148507029	148507029	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	148507029	148507029	APH1A	1	G	G	C	33
HRNR	388697	genome.wustl.edu	36	1	150453461	150453461	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	150453461	150453461	HRNR	1	C	C	T	31
GPR149	344758	genome.wustl.edu	36	3	155538219	155538219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	155538219	155538219	GPR149	3	G	G	A	34
OLFML2B	25903	genome.wustl.edu	36	1	160256591	160256591	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	160256591	160256591	OLFML2B	1	C	C	T	21
GLRA3	8001	genome.wustl.edu	36	4	175834972	175834972	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	175834972	175834972	GLRA3	4	C	C	T	21
PIKFYVE	200576	genome.wustl.edu	36	2	208846602	208846602	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	208846602	208846602	PIKFYVE	2	G	G	C	41
EIF4ENIF1	56478	genome.wustl.edu	36	22	30166737	30166737	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	30166737	30166737	EIF4ENIF1	22	C	C	-	30
EPDR1	54749	genome.wustl.edu	36	7	37926788	37926800	+	Frame_Shift_Del	DEL	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	AGGCAGTGGCAGC	AGGCAGTGGCAGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	37926788	37926800	EPDR1	7	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-	3
LOC100128975		genome.wustl.edu	36	19	19909009	19909009	+	Silent	SNP	G	A	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Silent	SNP	19909009	19909009	LOC100128975	19	G	A	G	33
PABPN1	8106	genome.wustl.edu	36	14	22861342	22861342	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	22861342	22861342	PABPN1	14	A	A	G	4
ADAMTS17	170691	genome.wustl.edu	36	15	98512972	98512972	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	98512972	98512972	ADAMTS17	15	C	C	T	24
COL7A1	1294	genome.wustl.edu	36	3	48604189	48604189	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01	TCGA-09-0366-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	48604189	48604189	COL7A1	3	C	C	T	23
SIM1	6492	genome.wustl.edu	36	6	101002802	101002802	+	Missense_Mutation	SNP	G	G	T		Unknown	TCGA-09-0366-01	TCGA-09-0366-01	G	G	G	T	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	101002802	101002802	SIM1	6	G	G	T	36
