Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
NPPA	4878	broad.mit.edu	36	1	11828658	11828658	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	11828658	11828658	NPPA	1	A	A	G	14
PADI3	51702	broad.mit.edu	36	1	17466930	17466930	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	17466930	17466930	PADI3	1	A	A	G	8
HIST2H2AC	8338	broad.mit.edu	36	1	148125221	148125221	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Nonsense_Mutation	SNP	148125221	148125221	HIST2H2AC	1	C	C	T	21
PGLYRP4	57115	broad.mit.edu	36	1	151579548	151579548	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	151579548	151579548	PGLYRP4	1	G	G	A	39
RASAL2	9462	broad.mit.edu	36	1	176535831	176535831	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Nonsense_Mutation	SNP	176535831	176535831	RASAL2	1	G	G	T	37
KCNT2	343450	broad.mit.edu	36	1	194516679	194516679	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	194516679	194516679	KCNT2	1	A	A	C	2
CR2	1380	broad.mit.edu	36	1	205706730	205706730	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Nonsense_Mutation	SNP	205706730	205706730	CR2	1	G	G	T	35
RYR2	6262	broad.mit.edu	36	1	235726661	235726661	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	235726661	235726661	RYR2	1	T	T	C	56
VN1R5	317705	broad.mit.edu	36	1	245486642	245486642	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	245486642	245486642	VN1R5	1	G	G	C	48
LIPK	643414	broad.mit.edu	36	10	90502302	90502302	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	90502302	90502302	LIPK	10	A	A	G	4
CYP2C19	1557	broad.mit.edu	36	10	96592719	96592719	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	96592719	96592719	CYP2C19	10	T	T	A	55
RAPSN	5913	broad.mit.edu	36	11	47419742	47419742	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	47419742	47419742	RAPSN	11	G	G	C	48
OR8H1	219469	broad.mit.edu	36	11	55814446	55814446	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	55814446	55814446	OR8H1	11	G	G	T	47
SSRP1	6749	broad.mit.edu	36	11	56852464	56852464	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	56852464	56852464	SSRP1	11	G	G	A	40
TCN1	6947	broad.mit.edu	36	11	59386668	59386668	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	59386668	59386668	TCN1	11	C	C	A	28
PACS1	55690	broad.mit.edu	36	11	65735253	65735253	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	65735253	65735253	PACS1	11	C	C	T	31
C11orf82	220042	broad.mit.edu	36	11	82317532	82317532	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	82317532	82317532	C11orf82	11	C	C	T	30
FAT3	120114	broad.mit.edu	36	11	91727535	91727535	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	91727535	91727535	FAT3	11	T	T	G	58
ACAT1	38	broad.mit.edu	36	11	107517594	107517594	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	107517594	107517594	ACAT1	11	T	T	C	61
FGF14	2259	broad.mit.edu	36	13	101177047	101177047	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	101177047	101177047	FGF14	13	A	A	G	4
AKAP6	9472	broad.mit.edu	36	14	32084933	32084933	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	32084933	32084933	AKAP6	14	G	G	A	46
C14orf118	55668	broad.mit.edu	36	14	75714093	75714093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	75714093	75714093	C14orf118	14	A	A	T	3
BDKRB1	623	broad.mit.edu	36	14	95800367	95800367	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	95800367	95800367	BDKRB1	14	C	C	A	25
RYR3	6263	broad.mit.edu	36	15	31680950	31680950	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	31680950	31680950	RYR3	15	G	G	T	43
NPRL3	8131	broad.mit.edu	36	16	82697	82697	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	82697	82697	NPRL3	16	G	G	C	41
TELO2	9894	broad.mit.edu	36	16	1489266	1489266	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	1489266	1489266	TELO2	16	G	G	A	47
C16orf75	116028	broad.mit.edu	36	16	11352077	11352077	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	11352077	11352077	C16orf75	16	C	C	T	24
ERCC4	2072	broad.mit.edu	36	16	13949294	13949294	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	13949294	13949294	ERCC4	16	C	C	T	21
PRRT2	112476	broad.mit.edu	36	16	29732014	29732014	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	29732014	29732014	PRRT2	16	G	G	A	35
EIF4A1	1973	broad.mit.edu	36	17	7421681	7421681	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	7421681	7421681	EIF4A1	17	A	A	G	2
LGALS9C	654346	broad.mit.edu	36	17	18327955	18327955	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	18327955	18327955	LGALS9C	17	C	C	A	19
IFI35	3430	broad.mit.edu	36	17	38419154	38419154	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	38419154	38419154	IFI35	17	G	G	T	40
RGS9	8787	broad.mit.edu	36	17	60651880	60651880	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	60651880	60651880	RGS9	17	G	G	A	39
BPTF	2186	broad.mit.edu	36	17	63331364	63331364	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	63331364	63331364	BPTF	17	G	G	C	48
CYP2A6	1548	broad.mit.edu	36	19	46044794	46044794	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	46044794	46044794	CYP2A6	19	G	G	T	33
MYH14	79784	broad.mit.edu	36	19	55471160	55471160	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	55471160	55471160	MYH14	19	G	G	T	48
ZNF765	91661	broad.mit.edu	36	19	58604142	58604142	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	58604142	58604142	ZNF765	19	A	A	T	1
LILRA1	11024	broad.mit.edu	36	19	59798208	59798208	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	59798208	59798208	LILRA1	19	C	C	T	22
KIF3C	3797	broad.mit.edu	36	2	26056956	26056956	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	26056956	26056956	KIF3C	2	G	G	T	43
IL18RAP	8807	broad.mit.edu	36	2	102420236	102420236	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	102420236	102420236	IL18RAP	2	G	G	T	48
BIN1	274	broad.mit.edu	36	2	127544637	127544637	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	127544637	127544637	BIN1	2	C	C	T	31
MYO1B	4430	broad.mit.edu	36	2	191969465	191969465	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	191969465	191969465	MYO1B	2	G	G	C	41
UGT1A10	54575	broad.mit.edu	36	2	234210562	234210562	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	234210562	234210562	UGT1A10	2	T	T	C	52
VPS16	64601	broad.mit.edu	36	20	2794086	2794086	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	2794086	2794086	VPS16	20	A	A	G	12
BPIL1	80341	broad.mit.edu	36	20	31065412	31065413	+	Missense_Mutation	DNP	TG	TG	AA	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	DNP	31065412	31065413	BPIL1	20	TG	TG	AA	51
DSN1	79980	broad.mit.edu	36	20	34832691	34832691	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	34832691	34832691	DSN1	20	T	T	G	55
DNTTIP1	116092	broad.mit.edu	36	20	43863484	43863484	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Nonsense_Mutation	SNP	43863484	43863484	DNTTIP1	20	G	G	T	35
SULF2	55959	broad.mit.edu	36	20	45798887	45798887	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	45798887	45798887	SULF2	20	C	C	A	25
B4GALT5	9334	broad.mit.edu	36	20	47696935	47696935	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	47696935	47696935	B4GALT5	20	G	G	T	44
POTED	317754	broad.mit.edu	36	21	13909667	13909667	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Nonsense_Mutation	SNP	13909667	13909667	POTED	21	G	G	T	47
GCFC1	94104	broad.mit.edu	36	21	33039006	33039006	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	33039006	33039006	GCFC1	21	A	A	C	9
HLCS	3141	broad.mit.edu	36	21	37231147	37231147	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	37231147	37231147	HLCS	21	G	G	T	44
SLC6A1	6529	broad.mit.edu	36	3	11034656	11034656	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	11034656	11034656	SLC6A1	3	C	C	T	29
CTNNB1	1499	broad.mit.edu	36	3	41253081	41253081	+	Splice_Site_SNP	SNP	A	A	G	rs71811389	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Splice_Site_SNP	SNP	41253081	41253081	CTNNB1	3	A	A	G	15
COL7A1	1294	broad.mit.edu	36	3	48584454	48584454	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	48584454	48584454	COL7A1	3	C	C	G	30
UQCRC1	7384	broad.mit.edu	36	3	48618282	48618283	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	DNP	48618282	48618283	UQCRC1	3	CC	CC	AA	30
EEFSEC	60678	broad.mit.edu	36	3	129542882	129542882	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	129542882	129542882	EEFSEC	3	G	G	T	44
ABCF3	55324	broad.mit.edu	36	3	185393112	185393112	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	185393112	185393112	ABCF3	3	C	C	G	21
THAP9	79725	broad.mit.edu	36	4	84058716	84058716	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	84058716	84058716	THAP9	4	A	A	T	11
PTPN13	5783	broad.mit.edu	36	4	87950112	87950112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	87950112	87950112	PTPN13	4	C	C	A	18
MEPE	56955	broad.mit.edu	36	4	88986112	88986112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	88986112	88986112	MEPE	4	C	C	A	17
FAT4	79633	broad.mit.edu	36	4	126461375	126461375	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	126461375	126461375	FAT4	4	T	T	A	58
TKTL2	84076	broad.mit.edu	36	4	164612997	164612997	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	164612997	164612997	TKTL2	4	C	C	A	17
SAP30	8819	broad.mit.edu	36	4	174529208	174529208	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	174529208	174529208	SAP30	4	C	C	A	31
GLRA3	8001	broad.mit.edu	36	4	175816848	175816848	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	175816848	175816848	GLRA3	4	C	C	T	25
KIAA0947	23379	broad.mit.edu	36	5	5513573	5513573	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	5513573	5513573	KIAA0947	5	G	G	A	33
MYO10	4651	broad.mit.edu	36	5	16725879	16725879	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	16725879	16725879	MYO10	5	G	G	A	34
IL31RA	133396	broad.mit.edu	36	5	55248398	55248398	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	55248398	55248398	IL31RA	5	A	A	G	4
FCHO2	115548	broad.mit.edu	36	5	72400306	72400306	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	72400306	72400306	FCHO2	5	G	G	T	36
SLCO6A1	133482	broad.mit.edu	36	5	101862268	101862268	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	101862268	101862268	SLCO6A1	5	C	C	A	18
FCHSD1	89848	broad.mit.edu	36	5	141006472	141006472	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	141006472	141006472	FCHSD1	5	A	A	G	6
TEAD3	7005	broad.mit.edu	36	6	35562328	35562328	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	35562328	35562328	TEAD3	6	A	A	C	8
MOCS1	0	broad.mit.edu	36	6	39985574	39985574	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	39985574	39985574	MOCS1	6	T	T	C	56
CD109	135228	broad.mit.edu	36	6	74574677	74574677	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	74574677	74574677	CD109	6	A	A	C	11
CGA	1081	broad.mit.edu	36	6	87852257	87852257	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	87852257	87852257	CGA	6	C	C	G	22
MET	4233	broad.mit.edu	36	7	116127036	116127036	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	116127036	116127036	MET	7	A	A	G	9
NPBWR1	2831	broad.mit.edu	36	8	54015988	54015988	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	54015988	54015988	NPBWR1	8	C	C	T	20
ASPH	444	broad.mit.edu	36	8	62651905	62651905	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	62651905	62651905	ASPH	8	C	C	G	28
CYP7B1	9420	broad.mit.edu	36	8	65671997	65671997	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	65671997	65671997	CYP7B1	8	G	G	A	44
C9orf72	203228	broad.mit.edu	36	9	27538308	27538308	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	27538308	27538308	C9orf72	9	C	C	G	24
UNC13B	10497	broad.mit.edu	36	9	35300543	35300543	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	35300543	35300543	UNC13B	9	C	C	T	29
TBC1D2	55357	broad.mit.edu	36	9	100057643	100057643	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	100057643	100057643	TBC1D2	9	A	A	G	8
SURF6	6838	broad.mit.edu	36	9	135189382	135189382	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	135189382	135189382	SURF6	9	C	C	T	32
MAGED1	9500	broad.mit.edu	36	X	51656346	51656346	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	51656346	51656346	MAGED1	23	G	G	A	33
HUWE1	10075	broad.mit.edu	36	X	53577081	53577081	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	53577081	53577081	HUWE1	23	G	G	T	33
PHF8	23133	broad.mit.edu	36	X	54037048	54037048	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	54037048	54037048	PHF8	23	T	T	C	55
FAM199X	139231	broad.mit.edu	36	X	103321041	103321041	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	103321041	103321041	FAM199X	23	T	T	C	56
KIAA1210	57481	broad.mit.edu	36	X	118112043	118112043	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Missense_Mutation	SNP	118112043	118112043	KIAA1210	23	T	T	A	53
SPANXN4	441525	broad.mit.edu	36	X	141949669	141949669	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Nonsense_Mutation	SNP	141949669	141949669	SPANXN4	23	G	G	T	35
TREX2	11219	broad.mit.edu	36	X	152363969	152363969	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2044-01	Broad	Silent	SNP	152363969	152363969	TREX2	23	G	G	T	35
HMBS	3145	broad.mit.edu	36	11	118464151	118464177	+	Splice_Site_Del	DEL	GTGACCTGGGGACTTTTTCTGCAGGAA	-	GTGACCTGGGGACTTTTTCTGCAGGAA	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Splice_Site_Del	DEL	118464151	118464177	HMBS	11	GTGACCTGGGGACTTTTTCTGCAGGAA	-	GTGACCTGGGGACTTTTTCTGCAGGAA	48
RIMBP2	23504	broad.mit.edu	36	12	129463099	129463127	+	Splice_Site_Del	DEL	ATAGGGGTTTGCGCTTACCTATTTTCTCC	-	ATAGGGGTTTGCGCTTACCTATTTTCTCC	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Splice_Site_Del	DEL	129463099	129463127	RIMBP2	12	ATAGGGGTTTGCGCTTACCTATTTTCTCC	-	ATAGGGGTTTGCGCTTACCTATTTTCTCC	4
PNP	4860	broad.mit.edu	36	14	20010384	20010385	+	Frame_Shift_Del	DEL	TC	-	TC	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Frame_Shift_Del	DEL	20010384	20010385	PNP	14	TC	-	TC	50
YLPM1	56252	broad.mit.edu	36	14	74334998	74335001	+	Frame_Shift_Del	DEL	GGTT	-	GGTT	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Frame_Shift_Del	DEL	74334998	74335001	YLPM1	14	GGTT	-	GGTT	43
TDP1	55775	broad.mit.edu	36	14	89525057	89525063	+	Frame_Shift_Del	DEL	GTCAGTT	-	GTCAGTT	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Frame_Shift_Del	DEL	89525057	89525063	TDP1	14	GTCAGTT	-	GTCAGTT	44
ATG2B	55102	broad.mit.edu	36	14	95858346	95858347	+	Splice_Site_Ins	INS	-	AA	-	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Splice_Site_Ins	INS	95858346	95858347	ATG2B	14	-	AA	-	53
IL21R	50615	broad.mit.edu	36	16	27356479	27356504	+	Frame_Shift_Del	DEL	GAGTGTGGCAGCTTTCTCCTGGCTGA	-	GAGTGTGGCAGCTTTCTCCTGGCTGA	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Frame_Shift_Del	DEL	27356479	27356504	IL21R	16	GAGTGTGGCAGCTTTCTCCTGGCTGA	-	GAGTGTGGCAGCTTTCTCCTGGCTGA	41
TP53	7157	broad.mit.edu	36	17	7518991	7519015	+	Splice_Site_Del	DEL	TAAGATGCTGAGGAGGGGCCAGACC	-	TAAGATGCTGAGGAGGGGCCAGACC	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Splice_Site_Del	DEL	7518991	7519015	TP53	17	TAAGATGCTGAGGAGGGGCCAGACC	-	TAAGATGCTGAGGAGGGGCCAGACC	49
TSC1	7248	broad.mit.edu	36	9	134768895	134768905	+	Frame_Shift_Del	DEL	GATCACCTTGC	-	GATCACCTTGC	novel	Unknown	TCGA-09-2044-01	TCGA-09-2044-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2044-01	Broad	Frame_Shift_Del	DEL	134768895	134768905	TSC1	9	GATCACCTTGC	-	GATCACCTTGC	45
