Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
DIP2C	22982	genome.wustl.edu	36	10	458810	458810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	458810	458810	DIP2C	10	G	G	A	38
FAM86A	196483	genome.wustl.edu	36	16	5080489	5080489	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	5080489	5080489	FAM86A	16	C	C	T	27
ASGR2	433	genome.wustl.edu	36	17	6946148	6946148	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	6946148	6946148	ASGR2	17	T	T	C	49
KLRC2	3822	genome.wustl.edu	36	12	10479201	10479201	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	10479201	10479201	KLRC2	12	A	A	G	13
PDE3A	5139	genome.wustl.edu	36	12	20694658	20694658	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20694658	20694658	PDE3A	12	G	G	T	48
CABIN1	23523	genome.wustl.edu	36	22	22860285	22860285	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	22860285	22860285	CABIN1	22	G	G	A	38
HIST1H2BC	8347	genome.wustl.edu	36	6	26232094	26232094	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	26232094	26232094	HIST1H2BC	6	C	C	A	20
PRSS16	10279	genome.wustl.edu	36	6	27324878	27324878	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27324878	27324878	PRSS16	6	C	C	T	22
ENSG00000215208		genome.wustl.edu	36	9	30790374	30790374	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	30790374	30790374	ENSG00000215208	9	T	T	C	53
C20orf185	359710	genome.wustl.edu	36	20	31123572	31123572	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	31123572	31123572	C20orf185	20	G	G	A	41
NEUROD6	63974	genome.wustl.edu	36	7	31344459	31344459	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	31344459	31344459	NEUROD6	7	C	C	T	31
GBA2	57704	genome.wustl.edu	36	9	35730010	35730010	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35730010	35730010	GBA2	9	G	G	A	39
THRAP3	9967	genome.wustl.edu	36	1	36527461	36527461	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	36527461	36527461	THRAP3	1	T	T	G	63
FREM2	341640	genome.wustl.edu	36	13	38328279	38328279	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	38328279	38328279	FREM2	13	A	A	T	3
DSCR4	10281	genome.wustl.edu	36	21	38348854	38348854	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	38348854	38348854	DSCR4	21	T	T	C	56
CCNYL2	414194	genome.wustl.edu	36	10	42285601	42285601	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	42285601	42285601	CCNYL2	10	A	A	G	10
ARHGEF1	9138	genome.wustl.edu	36	19	47090170	47090170	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	47090170	47090170	ARHGEF1	19	G	G	A	39
KLRAQ1	129285	genome.wustl.edu	36	2	48540782	48540782	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	48540782	48540782	KLRAQ1	2	T	T	G	62
AMT	275	genome.wustl.edu	36	3	49431466	49431466	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	49431466	49431466	AMT	3	A	A	G	8
KRT72	140807	genome.wustl.edu	36	12	51267752	51267752	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	51267752	51267752	KRT72	12	C	C	T	19
EHD2	30846	genome.wustl.edu	36	19	52935970	52935970	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	52935970	52935970	EHD2	19	C	C	G	20
GLI1	2735	genome.wustl.edu	36	12	56150700	56150700	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	56150700	56150700	GLI1	12	G	G	A	39
USP1	7398	genome.wustl.edu	36	1	62688607	62688607	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	62688607	62688607	USP1	1	C	C	G	28
FRMD4B	23150	genome.wustl.edu	36	3	69313206	69313206	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	69313206	69313206	FRMD4B	3	C	C	T	32
NFATC1	4772	genome.wustl.edu	36	18	75294569	75294569	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	75294569	75294569	NFATC1	18	C	C	T	23
GPR98	84059	genome.wustl.edu	36	5	89974258	89974258	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	89974258	89974258	GPR98	5	C	C	T	24
MRPL42	28977	genome.wustl.edu	36	12	92405485	92405485	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	92405485	92405485	MRPL42	12	G	G	T	45
TDRD7	23424	genome.wustl.edu	36	9	99277564	99277564	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	99277564	99277564	TDRD7	9	C	C	T	19
GAL3ST4	79690	genome.wustl.edu	36	7	99595714	99595714	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	99595714	99595714	GAL3ST4	7	C	C	A	29
CBLB	868	genome.wustl.edu	36	3	106921653	106921653	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	106921653	106921653	CBLB	3	C	C	T	31
ARHGEF7	8874	genome.wustl.edu	36	13	110736520	110736520	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	110736520	110736520	ARHGEF7	13	T	T	G	51
TBX5	6910	genome.wustl.edu	36	12	113278030	113278030	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	113278030	113278030	TBX5	12	T	T	A	55
CNTNAP5	129684	genome.wustl.edu	36	2	124716338	124716338	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	124716338	124716338	CNTNAP5	2	G	G	A	38
UROC1	131669	genome.wustl.edu	36	3	127703408	127703408	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	127703408	127703408	UROC1	3	A	A	G	9
L3MBTL3	84456	genome.wustl.edu	36	6	130455630	130455630	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	130455630	130455630	L3MBTL3	6	A	A	G	7
ENSG00000159247		genome.wustl.edu	36	9	140191016	140191016	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	T	C	T	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	140191016	140191016	ENSG00000159247	9	C	C	T	22
OR2F2	135948	genome.wustl.edu	36	7	143263482	143263482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	143263482	143263482	OR2F2	7	C	C	G	17
TCHH	7062	genome.wustl.edu	36	1	150346934	150346934	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	150346934	150346934	TCHH	1	T	T	C	55
MAP3K4	4216	genome.wustl.edu	36	6	161433095	161433095	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	161433095	161433095	MAP3K4	6	A	A	G	16
SI	6476	genome.wustl.edu	36	3	166220206	166220206	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	166220206	166220206	SI	3	G	G	T	45
TNR	7143	genome.wustl.edu	36	1	173560251	173560251	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	173560251	173560251	TNR	1	C	C	A	27
CEP350	9857	genome.wustl.edu	36	1	178290216	178290216	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	178290216	178290216	CEP350	1	C	C	T	23
TRIML1	339976	genome.wustl.edu	36	4	189305446	189305446	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	189305446	189305446	TRIML1	4	T	T	A	56
GRHL2	79977	genome.wustl.edu	36	8	102640019	102640020	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Ins	INS	102640019	102640020	GRHL2	8	-	-	T	45
MKNK1	8569	genome.wustl.edu	36	1	46824234	46824234	+	Splice_Site_SNP	SNP	C	G	C	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	C	C	G	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	46824234	46824234	MKNK1	1	C	G	C	20
OR5T2	219464	genome.wustl.edu	36	11	55756971	55756971	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	55756971	55756971	OR5T2	11	A	A	G	13
GPR142	350383	genome.wustl.edu	36	17	69880170	69880170	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	69880170	69880170	GPR142	17	G	G	A	34
ATP6V1F	9296	genome.wustl.edu	36	7	128292746	128292746	+	Missense_Mutation	SNP	G	G	A		Unknown	TCGA-13-0723-01	TCGA-13-0723-01	G	G	G	A	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	128292746	128292746	ATP6V1F	7	G	G	A	38
