Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
DOCK8	81704	genome.wustl.edu	36	9	408118	408118	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	408118	408118	DOCK8	9	G	G	C	35
KCNQ1	3784	genome.wustl.edu	36	11	2561263	2561263	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	2561263	2561263	KCNQ1	11	A	A	T	16
PFKFB3	5209	genome.wustl.edu	36	10	6301630	6301630	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	6301630	6301630	PFKFB3	10	C	C	G	28
TP53	7157	genome.wustl.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7517819	7517819	TP53	17	G	G	A	39
MUC16	94025	genome.wustl.edu	36	19	8859702	8859702	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	8859702	8859702	MUC16	19	G	G	A	35
BRPF1	7862	genome.wustl.edu	36	3	9758744	9758744	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	9758744	9758744	BRPF1	3	G	G	T	45
LPHN1	22859	genome.wustl.edu	36	19	14124354	14124354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	14124354	14124354	LPHN1	19	G	G	C	45
TTC39B	158219	genome.wustl.edu	36	9	15204172	15204172	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	15204172	15204172	TTC39B	9	G	G	T	48
KCNN1	3780	genome.wustl.edu	36	19	17961588	17961588	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	17961588	17961588	KCNN1	19	G	G	C	44
LOC100128853		genome.wustl.edu	36	19	23467859	23467859	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	23467859	23467859	LOC100128853	19	T	T	A	56
OPRD1	4985	genome.wustl.edu	36	1	29058393	29058393	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	29058393	29058393	OPRD1	1	C	C	A	23
GABBR1	2550	genome.wustl.edu	36	6	29685104	29685104	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	29685104	29685104	GABBR1	6	G	G	C	45
DDR1	780	genome.wustl.edu	36	6	30971186	30971186	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	30971186	30971186	DDR1	6	C	C	T	23
EPC1	80314	genome.wustl.edu	36	10	32621530	32621530	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	32621530	32621530	EPC1	10	G	G	T	40
AGXT2	64902	genome.wustl.edu	36	5	35039672	35039672	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35039672	35039672	AGXT2	5	A	A	G	7
C19orf2	8725	genome.wustl.edu	36	19	35193895	35193895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35193895	35193895	C19orf2	19	G	G	A	33
TRPC4	7223	genome.wustl.edu	36	13	37123424	37123424	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	37123424	37123424	TRPC4	13	G	G	T	47
TMEM87A	25963	genome.wustl.edu	36	15	40316920	40316920	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	40316920	40316920	TMEM87A	15	A	A	T	14
ZNF658	26149	genome.wustl.edu	36	9	40763337	40763337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	40763337	40763337	ZNF658	9	C	C	T	24
TUBGCP4	27229	genome.wustl.edu	36	15	41459634	41459634	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41459634	41459634	TUBGCP4	15	G	G	A	48
CDC27	996	genome.wustl.edu	36	17	42576246	42576246	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	42576246	42576246	CDC27	17	A	A	G	14
LEPRE1	64175	genome.wustl.edu	36	1	42996119	42996119	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	42996119	42996119	LEPRE1	1	G	G	A	40
KRTAP10-11	386678	genome.wustl.edu	36	21	44890836	44890836	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	44890836	44890836	KRTAP10-11	21	C	C	T	27
MYST2	11143	genome.wustl.edu	36	17	45248246	45248246	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	45248246	45248246	MYST2	17	G	G	C	33
ABCA13	154664	genome.wustl.edu	36	7	48256090	48256090	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48256090	48256090	ABCA13	7	G	G	T	43
OR4S1	256148	genome.wustl.edu	36	11	48285216	48285216	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48285216	48285216	OR4S1	11	A	A	T	2
HLF	3131	genome.wustl.edu	36	17	50747721	50747721	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	50747721	50747721	HLF	17	C	C	G	31
TCF12	6938	genome.wustl.edu	36	15	55143311	55143311	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55143311	55143311	TCF12	15	A	A	G	15
PCDH15	65217	genome.wustl.edu	36	10	55238564	55238564	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55238564	55238564	PCDH15	10	G	G	A	33
NLRC5	84166	genome.wustl.edu	36	16	55627535	55627535	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55627535	55627535	NLRC5	16	G	G	A	33
MS4A1	931	genome.wustl.edu	36	11	59986428	59986428	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	59986428	59986428	MS4A1	11	C	C	A	17
RTN3	10313	genome.wustl.edu	36	11	63280187	63280187	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	63280187	63280187	RTN3	11	G	G	A	38
RPS6KA4	8986	genome.wustl.edu	36	11	63885946	63885946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	63885946	63885946	RPS6KA4	11	G	G	A	40
HEPH	9843	genome.wustl.edu	36	X	65334415	65334415	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	65334415	65334415	HEPH	23	C	C	T	23
DYRK2	8445	genome.wustl.edu	36	12	66338143	66338143	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	66338143	66338143	DYRK2	12	G	G	T	42
LRRTM3	347731	genome.wustl.edu	36	10	68527509	68527509	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	68527509	68527509	LRRTM3	10	C	C	A	25
FAM155B	27112	genome.wustl.edu	36	X	68666246	68666246	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	68666246	68666246	FAM155B	23	A	A	G	2
MCEE	84693	genome.wustl.edu	36	2	71204994	71204994	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	71204994	71204994	MCEE	2	C	C	T	23
UNK	85451	genome.wustl.edu	36	17	71327785	71327785	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	71327785	71327785	UNK	17	G	G	C	44
RNF157	114804	genome.wustl.edu	36	17	71672458	71672458	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	71672458	71672458	RNF157	17	G	G	T	36
TERF1	7013	genome.wustl.edu	36	8	74099610	74099610	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	74099610	74099610	TERF1	8	G	G	A	34
USP35	57558	genome.wustl.edu	36	11	77594679	77594679	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	77594679	77594679	USP35	11	C	C	G	25
MDN1	23195	genome.wustl.edu	36	6	90466042	90466042	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	90466042	90466042	MDN1	6	T	T	A	56
SORBS1	10580	genome.wustl.edu	36	10	97086482	97086482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	97086482	97086482	SORBS1	10	C	C	G	30
OR4F6	390648	genome.wustl.edu	36	15	100163773	100163773	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	100163773	100163773	OR4F6	15	A	A	T	2
RRM2B	50484	genome.wustl.edu	36	8	103305502	103305502	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	103305502	103305502	RRM2B	8	C	C	G	32
GPR132	29933	genome.wustl.edu	36	14	104589053	104589053	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	104589053	104589053	GPR132	14	G	G	A	39
SORCS3	22986	genome.wustl.edu	36	10	107012229	107012229	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	107012229	107012229	SORCS3	10	G	G	A	38
ATM	472	genome.wustl.edu	36	11	107658692	107658692	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	107658692	107658692	ATM	11	G	G	C	33
ATXN7L2	127002	genome.wustl.edu	36	1	109835204	109835204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	109835204	109835204	ATXN7L2	1	C	C	T	22
SLC20A1	6574	genome.wustl.edu	36	2	113133017	113133017	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	113133017	113133017	SLC20A1	2	T	T	A	54
ZDHHC23	254887	genome.wustl.edu	36	3	115157899	115157899	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	115157899	115157899	ZDHHC23	3	C	C	G	29
HABP2	3026	genome.wustl.edu	36	10	115328441	115328441	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	115328441	115328441	HABP2	10	C	C	T	21
GLI2	2736	genome.wustl.edu	36	2	121458760	121458760	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	121458760	121458760	GLI2	2	G	G	A	40
SEC23IP	11196	genome.wustl.edu	36	10	121667951	121667951	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	121667951	121667951	SEC23IP	10	T	T	G	59
CNTNAP5	129684	genome.wustl.edu	36	2	124948826	124948826	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	124948826	124948826	CNTNAP5	2	C	C	T	18
RAP2C	57826	genome.wustl.edu	36	X	131175969	131175969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	131175969	131175969	RAP2C	23	C	C	G	30
POTEE	0	genome.wustl.edu	36	2	131737909	131737909	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	131737909	131737909	POTEE	2	T	T	C	55
TOPBP1	11073	genome.wustl.edu	36	3	134845592	134845592	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	134845592	134845592	TOPBP1	3	C	C	T	30
CTNNA1	1495	genome.wustl.edu	36	5	138146834	138146834	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	138146834	138146834	CTNNA1	5	C	C	T	21
ZNF7	7553	genome.wustl.edu	36	8	146039084	146039084	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	146039084	146039084	ZNF7	8	T	T	C	61
LCE1A	353131	genome.wustl.edu	36	1	151066620	151066620	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	151066620	151066620	LCE1A	1	C	C	T	25
ATF6	22926	genome.wustl.edu	36	1	160002790	160002790	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	160002790	160002790	ATF6	1	G	G	A	47
LRP2	4036	genome.wustl.edu	36	2	169730764	169730764	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	169730764	169730764	LRP2	2	A	A	C	12
BAT2L2	23215	genome.wustl.edu	36	1	169802148	169802148	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	169802148	169802148	BAT2L2	1	G	G	C	33
CCDC108	255101	genome.wustl.edu	36	2	219608465	219608465	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	219608465	219608465	CCDC108	2	G	G	A	36
TRIM17	51127	genome.wustl.edu	36	1	226662587	226662587	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	226662587	226662587	TRIM17	1	G	G	T	35
OR2T35	403244	genome.wustl.edu	36	1	246868520	246868520	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	246868520	246868520	OR2T35	1	G	G	A	41
PTPRK	5796	genome.wustl.edu	36	6	128547279	128547279	+	Nonsense_Mutation	SNP	T	A	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	T	T	A	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	128547279	128547279	PTPRK	6	T	A	T	64
BRCA2	675	genome.wustl.edu	36	13	31827170	31827170	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	A	T	A	T	A	T	Unknown	Valid	Germline	Phase_III	Capture	454_PCR_WGA;Sanger_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	31827170	31827170	BRCA2	13	A	A	T	11
SLC38A6	145389	genome.wustl.edu	36	14	60615398	60615398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	60615398	60615398	SLC38A6	14	G	G	C	35
SLC45A3	85414	genome.wustl.edu	36	1	203898728	203898728	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01	TCGA-13-0726-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	203898728	203898728	SLC45A3	1	G	G	C	38
CCDC136	64753	genome.wustl.edu	36	7	128237617	128237624	+	Frame_Shift_Del	DEL	TTCCAAAT	TTCCAAAT	-		Unknown	TCGA-13-0726-01	TCGA-13-0726-01	TTCCAAAT	TTCCAAAT	TTCCAAAT	-	TTCCAAAT	TTCCAAAT	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	128237617	128237624	CCDC136	7	TTCCAAAT	TTCCAAAT	-	52
CCDC136	64753	genome.wustl.edu	36	7	128237632	128237635	+	Frame_Shift_Del	DEL	GTCC	GTCC	-		Unknown	TCGA-13-0726-01	TCGA-13-0726-01	GTCC	GTCC	GTCC	-	GTCC	GTCC	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	128237632	128237635	CCDC136	7	GTCC	GTCC	-	36
