Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TP53	7157	genome.wustl.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	T	T	19
PER3	8863	genome.wustl.edu	36	1	7802824	7802824	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7802824	7802824	PER3	1	C	C	T	20
KLRC3	3823	genome.wustl.edu	36	12	10464245	10464245	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	10464245	10464245	KLRC3	12	T	T	C	52
AKAP8L	26993	genome.wustl.edu	36	19	15372127	15372127	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	15372127	15372127	AKAP8L	19	C	C	A	24
OR11H6	122748	genome.wustl.edu	36	14	19762235	19762235	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	19762235	19762235	OR11H6	14	T	T	A	58
SLCO1A2	6579	genome.wustl.edu	36	12	21344736	21344736	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	21344736	21344736	SLCO1A2	12	C	C	T	22
C2orf16	84226	genome.wustl.edu	36	2	27654707	27654707	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	27654707	27654707	C2orf16	2	A	A	G	13
SYNJ1	8867	genome.wustl.edu	36	21	32933092	32933092	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	32933092	32933092	SYNJ1	21	C	C	T	27
DHX57	90957	genome.wustl.edu	36	2	38939472	38939472	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	38939472	38939472	DHX57	2	T	T	A	51
KRT86	3892	genome.wustl.edu	36	12	50985326	50985326	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	50985326	50985326	KRT86	12	C	C	A	24
TET1	80312	genome.wustl.edu	36	10	70076261	70076261	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	70076261	70076261	TET1	10	G	G	T	44
ENSG00000214931		genome.wustl.edu	36	9	83720437	83720437	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	83720437	83720437	ENSG00000214931	9	A	A	T	12
CYP3A4	1576	genome.wustl.edu	36	7	99199567	99199567	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	99199567	99199567	CYP3A4	7	G	G	A	39
PCDH19	57526	genome.wustl.edu	36	X	99549239	99549239	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	99549239	99549239	PCDH19	23	T	T	A	58
TARSL2	123283	genome.wustl.edu	36	15	100043728	100043728	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	100043728	100043728	TARSL2	15	G	G	A	36
NALCN	259232	genome.wustl.edu	36	13	100512443	100512443	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	100512443	100512443	NALCN	13	G	A	A	39
GPRASP1	9737	genome.wustl.edu	36	X	101797468	101797468	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	101797468	101797468	GPRASP1	23	G	G	C	41
XPNPEP1	7511	genome.wustl.edu	36	10	111618436	111618436	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	111618436	111618436	XPNPEP1	10	G	G	A	35
ATG3	64422	genome.wustl.edu	36	3	113735828	113735828	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	113735828	113735828	ATG3	3	C	C	A	24
MCAM	4162	genome.wustl.edu	36	11	118688545	118688545	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	118688545	118688545	MCAM	11	C	C	T	30
PTPRZ1	5803	genome.wustl.edu	36	7	121458776	121458776	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	121458776	121458776	PTPRZ1	7	C	C	T	25
CASR	846	genome.wustl.edu	36	3	123477396	123477396	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	123477396	123477396	CASR	3	G	G	C	34
FAM83A	84985	genome.wustl.edu	36	8	124288594	124288594	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	124288594	124288594	FAM83A	8	G	G	A	39
COPG	22820	genome.wustl.edu	36	3	130453815	130453815	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	130453815	130453815	COPG	3	C	C	T	26
C7orf29	113763	genome.wustl.edu	36	7	149658736	149658736	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	149658736	149658736	C7orf29	7	G	G	C	40
ADCY10	55811	genome.wustl.edu	36	1	166119382	166119382	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	166119382	166119382	ADCY10	1	C	C	T	28
CEP350	9857	genome.wustl.edu	36	1	178290231	178290231	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	178290231	178290231	CEP350	1	G	G	T	47
CPS1	1373	genome.wustl.edu	36	2	211149360	211149360	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	211149360	211149360	CPS1	2	C	C	G	29
BRCA1	672	genome.wustl.edu	36	17	38512070	38512070	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	PCR	454_PCR_WGA		dbGAP	Sanger_PCR_WGA	WashU	Missense_Mutation	SNP	38512070	38512070	BRCA1	17	G	G	C	46
MSMB	4477	genome.wustl.edu	36	10	51232387	51232387	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	51232387	51232387	MSMB	10	T	T	A	58
MSMB	4477	genome.wustl.edu	36	10	51232394	51232394	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	51232394	51232394	MSMB	10	A	A	G	4
RTN1	6252	genome.wustl.edu	36	14	59263426	59263426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	59263426	59263426	RTN1	14	C	C	T	27
TRIP11	9321	genome.wustl.edu	36	14	91510766	91510767	+	Missense	DNP	GG	GG	CC		Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	C	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense	DNP	91510766	91510767	TRIP11	14	GG	GG	CC	47
CYP2A7P1		genome.wustl.edu	36	19	46224893	46224893	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	46224893	46224893	CYP2A7P1	19	G	G	A	38
NGEF	25791	genome.wustl.edu	36	2	233465877	233465877	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	233465877	233465877	NGEF	2	G	G	T	47
PTGS1	5742	genome.wustl.edu	36	9	124180553	124180553	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	124180553	124180553	PTGS1	9	C	T	T	23
GPR101	83550	genome.wustl.edu	36	X	135941474	135941474	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01	TCGA-13-0804-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	135941474	135941474	GPR101	23	G	G	A	40
CCNT1	904	genome.wustl.edu	36	12	47374183	47374183	+	Frame_Shift_Del	DEL	C	C	-		Unknown	TCGA-13-0804-01	TCGA-13-0804-01	C	C	C	-	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	47374183	47374183	CCNT1	12	C	C	-	29
IGHD	0	genome.wustl.edu	36	14	105382769	105382771	+	In_Frame_Del	DEL	CTC	CTC	-		Unknown	TCGA-13-0804-01	TCGA-13-0804-01	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	In_Frame_Del	DEL	105382769	105382771	IGHD	14	CTC	CTC	-	32
CBLC	23624	genome.wustl.edu	36	19	49988631	49988631	+	Frame_Shift_Del	DEL	A	A	-		Unknown	TCGA-13-0804-01	TCGA-13-0804-01	A	A	A	-	A	A	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	49988631	49988631	CBLC	19	A	A	-	11
