Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ERC1	23085	genome.wustl.edu	36	12	1216323	1216323	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	1216323	1216323	ERC1	12	C	C	T	25
HTT	3064	genome.wustl.edu	36	4	3099054	3099054	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	3099054	3099054	HTT	4	G	G	A	38
MXRA5	25878	genome.wustl.edu	36	X	3258743	3258743	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	3258743	3258743	MXRA5	23	T	T	G	59
CDC25B	994	genome.wustl.edu	36	20	3731558	3731558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	3731558	3731558	CDC25B	20	C	C	G	26
TRIM21	6737	genome.wustl.edu	36	11	4363210	4363210	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	4363210	4363210	TRIM21	11	C	C	T	25
ADAMTS16	170690	genome.wustl.edu	36	5	5239163	5239163	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	5239163	5239163	ADAMTS16	5	A	A	G	15
TP53	7157	genome.wustl.edu	36	17	7514728	7514728	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	7514728	7514728	TP53	17	G	G	A	39
C1orf127	148345	genome.wustl.edu	36	1	10940267	10940267	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	10940267	10940267	C1orf127	1	C	C	G	24
GSPT1	2935	genome.wustl.edu	36	16	11897968	11897968	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	11897968	11897968	GSPT1	16	C	C	A	27
SLC1A6	6511	genome.wustl.edu	36	19	14928395	14928395	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	14928395	14928395	SLC1A6	19	G	G	A	39
OR4N5	390437	genome.wustl.edu	36	14	19682585	19682585	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	19682585	19682585	OR4N5	14	C	C	A	24
ACSM5	54988	genome.wustl.edu	36	16	20356144	20356144	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20356144	20356144	ACSM5	16	T	T	C	58
ACSM5	54988	genome.wustl.edu	36	16	20356181	20356181	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20356181	20356181	ACSM5	16	C	C	G	29
DNAH3	55567	genome.wustl.edu	36	16	20882273	20882273	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20882273	20882273	DNAH3	16	A	A	C	2
HSPG2	3339	genome.wustl.edu	36	1	22074827	22074827	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	22074827	22074827	HSPG2	1	G	G	T	46
PTCHD1	139411	genome.wustl.edu	36	X	23321291	23321291	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	23321291	23321291	PTCHD1	23	A	A	G	6
SOX5	6660	genome.wustl.edu	36	12	23785168	23785168	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	23785168	23785168	SOX5	12	T	T	A	54
SLC34A2	10568	genome.wustl.edu	36	4	25280501	25280501	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	25280501	25280501	SLC34A2	4	G	G	C	41
C12orf11	55726	genome.wustl.edu	36	12	26980898	26980898	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	26980898	26980898	C12orf11	12	T	T	C	62
LNX2	222484	genome.wustl.edu	36	13	27039953	27039953	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27039953	27039953	LNX2	13	G	G	A	44
FLT1	2321	genome.wustl.edu	36	13	27906235	27906235	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27906235	27906235	FLT1	13	A	A	T	8
GPX6	257202	genome.wustl.edu	36	6	28582114	28582114	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	28582114	28582114	GPX6	6	C	C	A	21
PLAGL2	5326	genome.wustl.edu	36	20	30253404	30253404	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	30253404	30253404	PLAGL2	20	G	G	A	34
BPIL3	128859	genome.wustl.edu	36	20	31086228	31086228	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	31086228	31086228	BPIL3	20	A	A	G	7
C20orf152	140894	genome.wustl.edu	36	20	34031855	34031855	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	34031855	34031855	C20orf152	20	G	G	T	41
MEIS2	4212	genome.wustl.edu	36	15	35177473	35177473	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35177473	35177473	MEIS2	15	C	C	T	30
FAM98B	283742	genome.wustl.edu	36	15	36544776	36544776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	36544776	36544776	FAM98B	15	G	G	C	33
FRMPD1	22844	genome.wustl.edu	36	9	37734774	37734774	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	37734774	37734774	FRMPD1	9	C	C	T	18
CNTNAP1	8506	genome.wustl.edu	36	17	38096296	38096296	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	38096296	38096296	CNTNAP1	17	G	G	A	41
ATL2	64225	genome.wustl.edu	36	2	38423966	38423966	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	38423966	38423966	ATL2	2	C	C	G	19
ADAM32	203102	genome.wustl.edu	36	8	39187937	39187937	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	39187937	39187937	ADAM32	8	G	G	A	37
XIRP1	165904	genome.wustl.edu	36	3	39204307	39204307	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	39204307	39204307	XIRP1	3	C	C	G	22
DSCAM	1826	genome.wustl.edu	36	21	40647355	40647355	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	40647355	40647355	DSCAM	21	C	C	T	29
TCF20	6942	genome.wustl.edu	36	22	40935764	40935764	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	40935764	40935764	TCF20	22	G	G	C	36
EPSTI1	94240	genome.wustl.edu	36	13	42360622	42360622	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	42360622	42360622	EPSTI1	13	A	A	G	4
TDRD6	221400	genome.wustl.edu	36	6	46766750	46766750	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	46766750	46766750	TDRD6	6	T	T	C	56
ACP2	53	genome.wustl.edu	36	11	47223461	47223461	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	47223461	47223461	ACP2	11	A	A	G	7
MADD	8567	genome.wustl.edu	36	11	47289962	47289962	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	47289962	47289962	MADD	11	C	C	T	27
KRT6B	3854	genome.wustl.edu	36	12	51131903	51131903	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	51131903	51131903	KRT6B	12	C	C	G	28
CCDC8	83987	genome.wustl.edu	36	19	51607209	51607209	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	51607209	51607209	CCDC8	19	G	G	A	38
ANKRD52	0	genome.wustl.edu	36	12	54927661	54927661	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	54927661	54927661	ANKRD52	12	C	C	T	30
OR5M3	219482	genome.wustl.edu	36	11	55994078	55994078	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55994078	55994078	OR5M3	11	T	T	C	60
OR9Q2	219957	genome.wustl.edu	36	11	57714852	57714852	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	57714852	57714852	OR9Q2	11	C	C	A	18
DDX42	11325	genome.wustl.edu	36	17	59249245	59249245	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	59249245	59249245	DDX42	17	C	C	T	31
NLRP9	338321	genome.wustl.edu	36	19	60933032	60933032	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	60933032	60933032	NLRP9	19	A	A	T	7
CLVS1	157807	genome.wustl.edu	36	8	62375103	62375103	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	62375103	62375103	CLVS1	8	C	C	G	25
MTHFD1	4522	genome.wustl.edu	36	14	63956295	63956295	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	63956295	63956295	MTHFD1	14	G	G	C	44
SLC39A11	201266	genome.wustl.edu	36	17	68539330	68539330	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	68539330	68539330	SLC39A11	17	G	G	A	38
TET1	80312	genome.wustl.edu	36	10	70076113	70076113	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	70076113	70076113	TET1	10	T	T	G	53
SENP8	123228	genome.wustl.edu	36	15	70219543	70219543	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	70219543	70219543	SENP8	15	T	T	A	58
LMBRD1	55788	genome.wustl.edu	36	6	70464211	70464211	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	70464211	70464211	LMBRD1	6	G	G	A	33
RGAG4	340526	genome.wustl.edu	36	X	71267391	71267391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	71267391	71267391	RGAG4	23	C	C	T	27
HTA	283902	genome.wustl.edu	36	16	71684605	71684605	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	71684605	71684605	HTA	16	T	T	C	51
CCDC33	80125	genome.wustl.edu	36	15	72347841	72347841	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	72347841	72347841	CCDC33	15	A	A	T	8
ALMS1	7840	genome.wustl.edu	36	2	73570466	73570466	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	73570466	73570466	ALMS1	2	C	C	A	21
LOC100128989		genome.wustl.edu	36	X	74675133	74675133	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	74675133	74675133	LOC100128989	23	G	G	T	36
ZFHX4	79776	genome.wustl.edu	36	8	77929597	77929597	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	77929597	77929597	ZFHX4	8	A	A	C	5
ANTXR2	118429	genome.wustl.edu	36	4	81171861	81171861	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	81171861	81171861	ANTXR2	4	G	G	A	47
GRID1	2894	genome.wustl.edu	36	10	87477688	87477688	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	87477688	87477688	GRID1	10	G	G	A	34
TRRAP	8295	genome.wustl.edu	36	7	98419049	98419049	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	98419049	98419049	TRRAP	7	C	C	T	29
RRP12	23223	genome.wustl.edu	36	10	99131475	99131475	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	99131475	99131475	RRP12	10	G	G	A	40
BIRC3	330	genome.wustl.edu	36	11	101701193	101701193	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	101701193	101701193	BIRC3	11	C	C	G	32
BANK1	55024	genome.wustl.edu	36	4	102970198	102970198	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	102970198	102970198	BANK1	4	C	C	T	20
RPH3A	22895	genome.wustl.edu	36	12	111805509	111805509	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	111805509	111805509	RPH3A	12	G	G	A	39
SVEP1	79987	genome.wustl.edu	36	9	112189409	112189409	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	112189409	112189409	SVEP1	9	C	C	T	28
CSMD3	114788	genome.wustl.edu	36	8	113763936	113763936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	113763936	113763936	CSMD3	8	C	C	T	30
CTTNBP2	83992	genome.wustl.edu	36	7	117138969	117138969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	117138969	117138969	CTTNBP2	7	C	C	G	32
SRRM4	84530	genome.wustl.edu	36	12	118076550	118076550	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	118076550	118076550	SRRM4	12	T	T	G	55
C5	727	genome.wustl.edu	36	9	122819952	122819952	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	122819952	122819952	C5	9	C	C	G	32
ODZ1	10178	genome.wustl.edu	36	X	123345571	123345571	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	123345571	123345571	ODZ1	23	C	C	A	32
ZNF608	57507	genome.wustl.edu	36	5	124012207	124012207	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	124012207	124012207	ZNF608	5	T	T	A	58
FAM24A	118670	genome.wustl.edu	36	10	124662386	124662386	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	124662386	124662386	FAM24A	10	T	T	C	55
TNPO3	23534	genome.wustl.edu	36	7	128442343	128442343	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	128442343	128442343	TNPO3	7	G	G	T	40
MST4	51765	genome.wustl.edu	36	X	131034720	131034720	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	131034720	131034720	MST4	23	G	G	A	37
EFR3A	23167	genome.wustl.edu	36	8	133026219	133026219	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	133026219	133026219	EFR3A	8	G	G	C	36
HIPK2	28996	genome.wustl.edu	36	7	138949750	138949750	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	138949750	138949750	HIPK2	7	G	G	C	35
PCDHB16	57717	genome.wustl.edu	36	5	140542825	140542825	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	140542825	140542825	PCDHB16	5	C	C	T	20
ACVR1	90	genome.wustl.edu	36	2	158302334	158302334	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	158302334	158302334	ACVR1	2	C	C	G	29
HMP19	51617	genome.wustl.edu	36	5	173466990	173466990	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	173466990	173466990	HMP19	5	G	G	A	38
HOXD10	3236	genome.wustl.edu	36	2	176691930	176691930	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	176691930	176691930	HOXD10	2	G	G	A	41
LAMC2	3918	genome.wustl.edu	36	1	181479120	181479120	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	181479120	181479120	LAMC2	1	C	C	G	22
STAT1	6772	genome.wustl.edu	36	2	191547839	191547839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	191547839	191547839	STAT1	2	C	C	G	18
UBXN7	26043	genome.wustl.edu	36	3	197579394	197579394	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	197579394	197579394	UBXN7	3	C	C	A	32
BMPR2	659	genome.wustl.edu	36	2	203132718	203132718	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	203132718	203132718	BMPR2	2	G	G	C	40
EPRS	2058	genome.wustl.edu	36	1	218228735	218228735	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	218228735	218228735	EPRS	1	T	T	C	56
AGFG1	3267	genome.wustl.edu	36	2	228126694	228126694	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	228126694	228126694	AGFG1	2	A	A	G	3
COL6A3	1293	genome.wustl.edu	36	2	237908009	237908009	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	237908009	237908009	COL6A3	2	T	T	G	63
RGS7	6000	genome.wustl.edu	36	1	239032743	239032743	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	239032743	239032743	RGS7	1	C	C	T	18
COL4A1	1282	genome.wustl.edu	36	13	109615261	109615261	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	109615261	109615261	COL4A1	13	G	A	G	43
POLI	11201	genome.wustl.edu	36	18	50054322	50054322	+	Silent	SNP	C	A	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	A	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Silent	SNP	50054322	50054322	POLI	18	C	A	C	24
NRP1	8829	genome.wustl.edu	36	10	33550667	33550667	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	33550667	33550667	NRP1	10	C	C	G	18
POTEKP		genome.wustl.edu	36	2	132074138	132074138	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	132074138	132074138	POTEKP	2	C	C	G	20
ENSG00000197004		genome.wustl.edu	36	4	9365900	9365900	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	9365900	9365900	ENSG00000197004	4	T	T	A	54
PCDHA2	56146	genome.wustl.edu	36	5	140154755	140154755	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	140154755	140154755	PCDHA2	5	G	G	C	43
CDSN	1041	genome.wustl.edu	36	6	31191799	31191799	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	31191799	31191799	CDSN	6	C	C	G	20
ROR2	4920	genome.wustl.edu	36	9	93527050	93527050	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01	TCGA-13-0884-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	93527050	93527050	ROR2	9	G	G	A	43
C8orf76	84933	genome.wustl.edu	36	8	124312749	124312759	+	Frame_Shift_Del	DEL	TCAGCTGAGTC	TCAGCTGAGTC	-		Unknown	TCGA-13-0884-01	TCGA-13-0884-01	TCAGCTGAGTC	TCAGCTGAGTC	TCAGCTGAGTC	-	TCAGCTGAGTC	TCAGCTGAGTC	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	124312749	124312759	C8orf76	8	TCAGCTGAGTC	TCAGCTGAGTC	-	62
