Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
AADACL4	343066	broad.mit.edu	36	1	12648632	12648632	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	12648632	12648632	AADACL4	1	A	A	C	9
TRIM63	84676	broad.mit.edu	36	1	26260276	26260276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	26260276	26260276	TRIM63	1	C	C	A	26
RPE65	6121	broad.mit.edu	36	1	68677271	68677271	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	68677271	68677271	RPE65	1	G	G	C	45
PTGFR	5737	broad.mit.edu	36	1	78731443	78731443	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	78731443	78731443	PTGFR	1	C	C	A	29
ODF2L	57489	broad.mit.edu	36	1	86594815	86594815	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	86594815	86594815	ODF2L	1	G	G	A	40
ABCA4	24	broad.mit.edu	36	1	94294785	94294785	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	94294785	94294785	ABCA4	1	G	G	T	42
LCE2C	353140	broad.mit.edu	36	1	150915333	150915333	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	150915333	150915333	LCE2C	1	T	T	G	55
LMNA	4000	broad.mit.edu	36	1	154374944	154374944	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	154374944	154374944	LMNA	1	C	C	A	18
LBR	3930	broad.mit.edu	36	1	223664643	223664643	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	223664643	223664643	LBR	1	G	G	C	33
CUBN	8029	broad.mit.edu	36	10	17182224	17182224	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	17182224	17182224	CUBN	10	A	A	G	3
MYPN	84665	broad.mit.edu	36	10	69625251	69625251	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	69625251	69625251	MYPN	10	T	T	G	60
ADAMTS14	140766	broad.mit.edu	36	10	72170895	72170895	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	72170895	72170895	ADAMTS14	10	A	A	T	6
PACS1	55690	broad.mit.edu	36	11	65594709	65594709	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	65594709	65594709	PACS1	11	C	C	G	30
SERPINH1	871	broad.mit.edu	36	11	74955282	74955282	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	74955282	74955282	SERPINH1	11	C	C	G	31
FAT3	120114	broad.mit.edu	36	11	91726643	91726643	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	91726643	91726643	FAT3	11	G	G	A	37
WNK1	65125	broad.mit.edu	36	12	809542	809542	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	809542	809542	WNK1	12	C	C	T	20
H2AFJ	55766	broad.mit.edu	36	12	14818950	14818950	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	14818950	14818950	H2AFJ	12	G	G	C	36
STK38L	23012	broad.mit.edu	36	12	27362215	27362215	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	27362215	27362215	STK38L	12	C	C	A	32
CEP290	80184	broad.mit.edu	36	12	86989785	86989785	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	86989785	86989785	CEP290	12	G	G	C	42
MYH7	4625	broad.mit.edu	36	14	22971763	22971763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	22971763	22971763	MYH7	14	G	G	A	39
DLK1	8788	broad.mit.edu	36	14	100270974	100270974	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	100270974	100270974	DLK1	14	C	C	T	19
THBS1	7057	broad.mit.edu	36	15	37663834	37663834	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Silent	SNP	37663834	37663834	THBS1	15	T	T	A	54
TTBK2	146057	broad.mit.edu	36	15	40832482	40832482	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	40832482	40832482	TTBK2	15	G	G	C	45
HAPLN3	145864	broad.mit.edu	36	15	87223476	87223476	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	87223476	87223476	HAPLN3	15	G	G	A	40
IL4R	3566	broad.mit.edu	36	16	27281903	27281903	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	27281903	27281903	IL4R	16	G	G	A	41
TUBB3	10381	broad.mit.edu	36	16	88527464	88527464	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	88527464	88527464	TUBB3	16	T	T	C	62
YWHAE	7531	broad.mit.edu	36	17	1250112	1250112	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Nonsense_Mutation	SNP	1250112	1250112	YWHAE	17	C	C	A	31
TP53	7157	broad.mit.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	7517830	7517830	TP53	17	G	G	C	35
TNS4	84951	broad.mit.edu	36	17	35889572	35889572	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	35889572	35889572	TNS4	17	C	C	T	30
WFIKKN2	124857	broad.mit.edu	36	17	46272336	46272336	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	46272336	46272336	WFIKKN2	17	C	C	T	24
COX11	1353	broad.mit.edu	36	17	50400990	50400990	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	50400990	50400990	COX11	17	C	C	A	19
TTYH2	94015	broad.mit.edu	36	17	69758052	69758052	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	69758052	69758052	TTYH2	17	C	C	T	18
KIAA0802	23255	broad.mit.edu	36	18	8815314	8815314	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	8815314	8815314	KIAA0802	18	C	C	T	30
LAMA3	3909	broad.mit.edu	36	18	19673834	19673834	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Silent	SNP	19673834	19673834	LAMA3	18	C	C	G	22
MUC16	94025	broad.mit.edu	36	19	8944768	8944768	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	8944768	8944768	MUC16	19	C	C	T	32
ILF3	3609	broad.mit.edu	36	19	10654341	10654341	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Silent	SNP	10654341	10654341	ILF3	19	C	C	T	21
GATAD2A	54815	broad.mit.edu	36	19	19473163	19473163	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	19473163	19473163	GATAD2A	19	G	G	C	43
PRODH2	58510	broad.mit.edu	36	19	40994993	40994993	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	40994993	40994993	PRODH2	19	G	G	T	44
TEX101	83639	broad.mit.edu	36	19	48612233	48612233	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	48612233	48612233	TEX101	19	A	A	T	7
ZNF610	162963	broad.mit.edu	36	19	57561365	57561365	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	57561365	57561365	ZNF610	19	G	G	A	48
ZNF552	79818	broad.mit.edu	36	19	63011287	63011287	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	63011287	63011287	ZNF552	19	T	T	C	62
ZSCAN1	284312	broad.mit.edu	36	19	63255711	63255711	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	63255711	63255711	ZSCAN1	19	A	A	T	6
ETAA1	54465	broad.mit.edu	36	2	67485207	67485207	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	67485207	67485207	ETAA1	2	G	G	C	36
CNGA3	1261	broad.mit.edu	36	2	98380026	98380026	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	98380026	98380026	CNGA3	2	C	C	T	18
LYG2	254773	broad.mit.edu	36	2	99228301	99228301	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	99228301	99228301	LYG2	2	A	A	C	3
TANC1	85461	broad.mit.edu	36	2	159794435	159794435	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Nonsense_Mutation	SNP	159794435	159794435	TANC1	2	A	A	T	5
DYTN	391475	broad.mit.edu	36	2	207224851	207224851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	207224851	207224851	DYTN	2	G	G	A	34
SLC4A11	83959	broad.mit.edu	36	20	3163474	3163474	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	3163474	3163474	SLC4A11	20	A	A	T	9
WFDC5	149708	broad.mit.edu	36	20	43172775	43172775	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	43172775	43172775	WFDC5	20	G	G	A	44
STAU1	6780	broad.mit.edu	36	20	47169963	47169963	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	47169963	47169963	STAU1	20	G	G	A	38
GNAS	2778	broad.mit.edu	36	20	56913889	56913889	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Nonsense_Mutation	SNP	56913889	56913889	GNAS	20	C	C	G	19
GGT5	2687	broad.mit.edu	36	22	22952670	22952670	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	22952670	22952670	GGT5	22	C	C	T	17
WNT7A	7476	broad.mit.edu	36	3	13835897	13835897	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	13835897	13835897	WNT7A	3	C	C	G	30
CAPN7	23473	broad.mit.edu	36	3	15257122	15257122	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	15257122	15257122	CAPN7	3	G	G	C	33
DNAH1	25981	broad.mit.edu	36	3	52405674	52405674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	52405674	52405674	DNAH1	3	G	G	A	44
HSPBAP1	79663	broad.mit.edu	36	3	123970328	123970328	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	123970328	123970328	HSPBAP1	3	T	T	A	51
C3orf59	151963	broad.mit.edu	36	3	193999044	193999044	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	193999044	193999044	C3orf59	3	G	G	C	44
IL7R	3575	broad.mit.edu	36	5	35896794	35896794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	35896794	35896794	IL7R	5	A	A	T	10
ERBB2IP	55914	broad.mit.edu	36	5	65352971	65352971	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Splice_Site_SNP	SNP	65352971	65352971	ERBB2IP	5	T	T	A	57
PJA2	9867	broad.mit.edu	36	5	108745197	108745197	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	108745197	108745197	PJA2	5	T	T	G	60
PCDHB5	26167	broad.mit.edu	36	5	140495805	140495805	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	140495805	140495805	PCDHB5	5	G	G	A	39
HTR4	3360	broad.mit.edu	36	5	147869419	147869419	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	147869419	147869419	HTR4	5	G	G	C	35
BAT2	7916	broad.mit.edu	36	6	31711457	31711457	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Silent	SNP	31711457	31711457	BAT2	6	C	C	T	26
UHRF1BP1	54887	broad.mit.edu	36	6	34933527	34933527	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	34933527	34933527	UHRF1BP1	6	T	T	C	51
ASCC3	10973	broad.mit.edu	36	6	101354981	101354981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	101354981	101354981	ASCC3	6	G	G	A	42
KIAA1919	91749	broad.mit.edu	36	6	111691771	111691771	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	111691771	111691771	KIAA1919	6	T	T	A	64
FSCN1	6624	broad.mit.edu	36	7	5610090	5610090	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Silent	SNP	5610090	5610090	FSCN1	7	C	C	T	29
DLX6	1750	broad.mit.edu	36	7	96474989	96474989	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	96474989	96474989	DLX6	7	G	G	T	35
TRPV5	56302	broad.mit.edu	36	7	142332804	142332804	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	142332804	142332804	TRPV5	7	C	C	A	19
WDR60	55112	broad.mit.edu	36	7	158365361	158365361	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	158365361	158365361	WDR60	7	T	T	G	64
ADAMTSL1	92949	broad.mit.edu	36	9	18766831	18766831	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	18766831	18766831	ADAMTSL1	9	G	G	T	35
COL5A1	1289	broad.mit.edu	36	9	136799012	136799012	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Silent	SNP	136799012	136799012	COL5A1	9	A	A	T	7
SMS	6611	broad.mit.edu	36	X	21906034	21906034	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	21906034	21906034	SMS	23	A	A	T	8
POLA1	5422	broad.mit.edu	36	X	24737953	24737953	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Silent	SNP	24737953	24737953	POLA1	23	A	A	G	3
CLCN5	1184	broad.mit.edu	36	X	49743532	49743532	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	49743532	49743532	CLCN5	23	G	G	T	46
FGD1	2245	broad.mit.edu	36	X	54498936	54498936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	54498936	54498936	FGD1	23	C	C	T	31
FAM123B	139285	broad.mit.edu	36	X	63326799	63326799	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Silent	SNP	63326799	63326799	FAM123B	23	G	G	C	42
ACRC	93953	broad.mit.edu	36	X	70745675	70745675	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	70745675	70745675	ACRC	23	T	T	A	50
PAK3	5063	broad.mit.edu	36	X	110324209	110324209	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	110324209	110324209	PAK3	23	G	G	T	43
IGSF1	3547	broad.mit.edu	36	X	130244862	130244862	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0913-01	Broad	Missense_Mutation	SNP	130244862	130244862	IGSF1	23	T	T	C	62
NBPF10	100132406	broad.mit.edu	36	1	144038903	144038907	+	Frame_Shift_Del	DEL	TGAAT	-	TGAAT	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	Frame_Shift_Del	DEL	144038903	144038907	NBPF10	1	TGAAT	-	TGAAT	55
GPR37L1	9283	broad.mit.edu	36	1	200363835	200363843	+	In_Frame_Del	DEL	CAGTCACCT	-	CAGTCACCT	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	In_Frame_Del	DEL	200363835	200363843	GPR37L1	1	CAGTCACCT	-	CAGTCACCT	17
PRKCQ	5588	broad.mit.edu	36	10	6565544	6565562	+	Frame_Shift_Del	DEL	GACTCCCAGGAAATGCCCT	-	GACTCCCAGGAAATGCCCT	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	Frame_Shift_Del	DEL	6565544	6565562	PRKCQ	10	GACTCCCAGGAAATGCCCT	-	GACTCCCAGGAAATGCCCT	33
OR6X1	390260	broad.mit.edu	36	11	123130340	123130340	+	Frame_Shift_Del	DEL	A	-	-	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	Frame_Shift_Del	DEL	123130340	123130340	OR6X1	11	A	-	-	15
FOXJ2	55810	broad.mit.edu	36	12	8083874	8083881	+	Frame_Shift_Del	DEL	CAGTGCAC	-	CAGTGCAC	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	Frame_Shift_Del	DEL	8083874	8083881	FOXJ2	12	CAGTGCAC	-	CAGTGCAC	25
KIAA1409	57578	broad.mit.edu	36	14	93116303	93116353	+	In_Frame_Del	DEL	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	-	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	In_Frame_Del	DEL	93116303	93116353	KIAA1409	14	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	-	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	10
MUC16	94025	broad.mit.edu	36	19	8949834	8949848	+	In_Frame_Del	DEL	GCAGAGAGAGAAGTG	-	GCAGAGAGAGAAGTG	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			-	GCAGAGAGAGAAGTG	GCAGAGAGAGAAGTG	GCAGAGAGAGAAGTG	Unknown	Valid	Somatic	Phase_I	Capture				Illumina GAIIx	TCGA-13-0913-01	Broad	In_Frame_Del	DEL	8949834	8949848	MUC16	19	GCAGAGAGAGAAGTG	-	GCAGAGAGAGAAGTG	34
ASNA1	439	broad.mit.edu	36	19	12717512	12717523	+	In_Frame_Del	DEL	TGGAGCGGGGCC	-	TGGAGCGGGGCC	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	In_Frame_Del	DEL	12717512	12717523	ASNA1	19	TGGAGCGGGGCC	-	TGGAGCGGGGCC	59
MYO3B	140469	broad.mit.edu	36	2	170948469	170948498	+	In_Frame_Del	DEL	TCCAGACTTTATCATGGGGTGAAACGCGCC	-	TCCAGACTTTATCATGGGGTGAAACGCGCC	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	In_Frame_Del	DEL	170948469	170948498	MYO3B	2	TCCAGACTTTATCATGGGGTGAAACGCGCC	-	TCCAGACTTTATCATGGGGTGAAACGCGCC	62
DHX30	22907	broad.mit.edu	36	3	47866108	47866127	+	Splice_Site_Del	DEL	GCCCTGTGTTCCCTAGGGAG	-	GCCCTGTGTTCCCTAGGGAG	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	Splice_Site_Del	DEL	47866108	47866127	DHX30	3	GCCCTGTGTTCCCTAGGGAG	-	GCCCTGTGTTCCCTAGGGAG	34
SYNGAP1	8831	broad.mit.edu	36	6	33519653	33519661	+	In_Frame_Del	DEL	GGGGGCAGC	-	GGGGGCAGC	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	In_Frame_Del	DEL	33519653	33519661	SYNGAP1	6	GGGGGCAGC	-	GGGGGCAGC	47
DCAF4L2	138009	broad.mit.edu	36	8	88955315	88955320	+	Nonsense_Mutation	DEL	TTTCGT	-	TTTCGT	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0913-01	Broad	Nonsense_Mutation	DEL	88955315	88955320	DCAF4L2	8	TTTCGT	-	TTTCGT	52
ARMCX2	9823	broad.mit.edu	36	X	100798262	100798284	+	Frame_Shift_Del	DEL	GGCTGCAGCAGCTGCTGCAGCCC	-	GGCTGCAGCAGCTGCTGCAGCCC	novel	Unknown	TCGA-13-0913-01	TCGA-13-0913-01			-	GGCTGCAGCAGCTGCTGCAGCCC	GGCTGCAGCAGCTGCTGCAGCCC	GGCTGCAGCAGCTGCTGCAGCCC	Unknown	Valid	Somatic	Phase_I	Capture				Illumina GAIIx	TCGA-13-0913-01	Broad	Frame_Shift_Del	DEL	100798262	100798284	ARMCX2	23	GGCTGCAGCAGCTGCTGCAGCCC	-	GGCTGCAGCAGCTGCTGCAGCCC	35
