Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PLCH2	9651	broad.mit.edu	36	1	2410548	2410548	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	2410548	2410548	PLCH2	1	C	C	G	30
CRNN	49860	broad.mit.edu	36	1	150649344	150649344	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	150649344	150649344	CRNN	1	G	G	T	47
NTRK1	4914	broad.mit.edu	36	1	155112836	155112836	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Silent	SNP	155112836	155112836	NTRK1	1	G	G	A	33
ANXA7	310	broad.mit.edu	36	10	74826311	74826311	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	74826311	74826311	ANXA7	10	G	G	C	35
LCOR	84458	broad.mit.edu	36	10	98698842	98698842	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	98698842	98698842	LCOR	10	C	C	T	18
RRP12	23223	broad.mit.edu	36	10	99140562	99140562	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	99140562	99140562	RRP12	10	A	A	T	9
CRTAC1	55118	broad.mit.edu	36	10	99657889	99657889	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Nonsense_Mutation	SNP	99657889	99657889	CRTAC1	10	G	G	A	39
PPRC1	23082	broad.mit.edu	36	10	103887617	103887617	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Silent	SNP	103887617	103887617	PPRC1	10	G	G	A	39
OBFC1	79991	broad.mit.edu	36	10	105638857	105638857	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	105638857	105638857	OBFC1	10	G	G	C	41
C11orf41	25758	broad.mit.edu	36	11	33523082	33523082	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Silent	SNP	33523082	33523082	C11orf41	11	C	C	T	23
CABP4	57010	broad.mit.edu	36	11	66982457	66982457	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Silent	SNP	66982457	66982457	CABP4	11	C	C	T	28
XRRA1	143570	broad.mit.edu	36	11	74233764	74233764	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Splice_Site_SNP	SNP	74233764	74233764	XRRA1	11	A	A	G	14
SLC37A2	219855	broad.mit.edu	36	11	124455789	124455789	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Silent	SNP	124455789	124455789	SLC37A2	11	C	C	A	23
LRFN5	145581	broad.mit.edu	36	14	41426911	41426911	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	41426911	41426911	LRFN5	14	C	C	T	19
KCNH5	27133	broad.mit.edu	36	14	62244875	62244875	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	62244875	62244875	KCNH5	14	G	G	A	39
C15orf55	256646	broad.mit.edu	36	15	32436146	32436146	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	32436146	32436146	C15orf55	15	C	C	T	30
ITFG1	81533	broad.mit.edu	36	16	45850120	45850120	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Silent	SNP	45850120	45850120	ITFG1	16	T	T	C	50
CES3	23491	broad.mit.edu	36	16	65558234	65558234	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	65558234	65558234	CES3	16	G	G	T	48
TAT	6898	broad.mit.edu	36	16	70161677	70161677	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	70161677	70161677	TAT	16	A	A	C	11
TP53	7157	broad.mit.edu	36	17	7518306	7518306	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	7518306	7518306	TP53	17	A	A	T	15
ZPBP2	124626	broad.mit.edu	36	17	35282836	35282836	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Silent	SNP	35282836	35282836	ZPBP2	17	G	G	A	38
SEPT9	10801	broad.mit.edu	36	17	72995966	72995966	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Silent	SNP	72995966	72995966	SEPT9	17	A	A	T	7
MBD3	53615	broad.mit.edu	36	19	1529479	1529479	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	1529479	1529479	MBD3	19	C	C	G	31
ZNF77	58492	broad.mit.edu	36	19	2884602	2884602	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	2884602	2884602	ZNF77	19	C	C	T	19
ASNA1	439	broad.mit.edu	36	19	12719090	12719090	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	12719090	12719090	ASNA1	19	G	G	A	38
NDUFB7	4713	broad.mit.edu	36	19	14538058	14538058	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	14538058	14538058	NDUFB7	19	C	C	T	30
USP29	57663	broad.mit.edu	36	19	62332686	62332686	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	62332686	62332686	USP29	19	C	C	A	20
TTN	7273	broad.mit.edu	36	2	179165786	179165786	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	179165786	179165786	TTN	2	G	G	A	34
FZD5	7855	broad.mit.edu	36	2	208340364	208340364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	208340364	208340364	FZD5	2	G	G	A	39
C2orf67	151050	broad.mit.edu	36	2	210648569	210648569	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	210648569	210648569	C2orf67	2	G	G	C	48
WNT6	7475	broad.mit.edu	36	2	219446779	219446779	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	219446779	219446779	WNT6	2	C	C	T	23
COL6A3	1293	broad.mit.edu	36	2	237914270	237914270	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	237914270	237914270	COL6A3	2	G	G	C	48
KCNS1	3787	broad.mit.edu	36	20	43160331	43160331	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	43160331	43160331	KCNS1	20	C	C	A	27
CASS4	57091	broad.mit.edu	36	20	54466892	54466892	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Silent	SNP	54466892	54466892	CASS4	20	G	G	A	43
HHLA2	11148	broad.mit.edu	36	3	109559411	109559411	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	109559411	109559411	HHLA2	3	T	T	A	60
FTMT	94033	broad.mit.edu	36	5	121215735	121215735	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	121215735	121215735	FTMT	5	G	G	T	39
ARAP3	64411	broad.mit.edu	36	5	141032024	141032024	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Nonsense_Mutation	SNP	141032024	141032024	ARAP3	5	G	G	A	46
SYNGAP1	8831	broad.mit.edu	36	6	33519227	33519227	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	33519227	33519227	SYNGAP1	6	G	G	A	41
TFAP2D	83741	broad.mit.edu	36	6	50804949	50804949	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	50804949	50804949	TFAP2D	6	C	C	A	25
SHPRH	257218	broad.mit.edu	36	6	146306061	146306061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Missense_Mutation	SNP	146306061	146306061	SHPRH	6	C	C	T	28
HEATR2	54919	broad.mit.edu	36	7	776749	776749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1484-01	Broad	Silent	SNP	776749	776749	HEATR2	7	G	G	A	46
TRRAP	8295	broad.mit.edu	36	7	98411725	98411725	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Silent	SNP	98411725	98411725	TRRAP	7	C	C	T	27
PTCHD1	139411	broad.mit.edu	36	X	23321698	23321698	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1484-01	Broad	Silent	SNP	23321698	23321698	PTCHD1	23	G	G	T	39
DDX12	440081	broad.mit.edu	36	12	9481918	9481919	+	In_Frame_Ins	INS	-	CTGAGTAAC	-	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-1484-01	Broad	In_Frame_Ins	INS	9481918	9481919	DDX12	12	-	CTGAGTAAC	-	2
PPM1E	22843	broad.mit.edu	36	17	54188467	54188468	+	In_Frame_Ins	INS	-	CGAACC	-	novel	Unknown	TCGA-13-1484-01	TCGA-13-1484-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-1484-01	Broad	In_Frame_Ins	INS	54188467	54188468	PPM1E	17	-	CGAACC	-	22
