Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
C1orf158	93190	broad.mit.edu	36	1	12741948	12741948	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	12741948	12741948	C1orf158	1	G	G	C	38
TMEM53	79639	broad.mit.edu	36	1	44893252	44893252	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	44893252	44893252	TMEM53	1	G	G	T	39
DNASE2B	58511	broad.mit.edu	36	1	84636855	84636855	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	84636855	84636855	DNASE2B	1	C	C	A	25
NTNG1	22854	broad.mit.edu	36	1	107780840	107780840	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	107780840	107780840	NTNG1	1	A	A	C	8
LCE5A	254910	broad.mit.edu	36	1	150750732	150750732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	150750732	150750732	LCE5A	1	C	C	T	22
GON4L	54856	broad.mit.edu	36	1	154057945	154057945	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	154057945	154057945	GON4L	1	G	G	C	48
OR10J1	26476	broad.mit.edu	36	1	157676530	157676530	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	157676530	157676530	OR10J1	1	A	A	T	8
LRRC52	440699	broad.mit.edu	36	1	163780187	163780187	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	163780187	163780187	LRRC52	1	G	G	T	44
CACNA1S	779	broad.mit.edu	36	1	199327779	199327779	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	199327779	199327779	CACNA1S	1	T	T	G	56
TLR5	7100	broad.mit.edu	36	1	221351593	221351593	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	221351593	221351593	TLR5	1	G	G	T	43
EPHX1	2052	broad.mit.edu	36	1	224086101	224086101	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Splice_Site_SNP	SNP	224086101	224086101	EPHX1	1	A	A	T	7
DIP2C	22982	broad.mit.edu	36	10	426258	426258	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	426258	426258	DIP2C	10	G	G	C	43
CUBN	8029	broad.mit.edu	36	10	17185131	17185131	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	17185131	17185131	CUBN	10	T	T	G	56
ZNF365	22891	broad.mit.edu	36	10	63806262	63806262	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	63806262	63806262	ZNF365	10	T	T	C	57
JMJD1C	221037	broad.mit.edu	36	10	64614412	64614412	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	64614412	64614412	JMJD1C	10	A	A	T	14
DOCK1	1793	broad.mit.edu	36	10	128687675	128687675	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Nonsense_Mutation	SNP	128687675	128687675	DOCK1	10	C	C	T	27
IGSF22	283284	broad.mit.edu	36	11	18696217	18696217	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Splice_Site_SNP	SNP	18696217	18696217	IGSF22	11	C	C	G	24
OR5AN1	390195	broad.mit.edu	36	11	58888817	58888817	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	58888817	58888817	OR5AN1	11	A	A	T	16
AHNAK	79026	broad.mit.edu	36	11	62043091	62043091	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	62043091	62043091	AHNAK	11	G	G	C	33
SLC22A10	387775	broad.mit.edu	36	11	62814454	62814454	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	62814454	62814454	SLC22A10	11	T	T	A	54
BIRC3	330	broad.mit.edu	36	11	101712728	101712728	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	101712728	101712728	BIRC3	11	C	C	G	17
KCNA5	3741	broad.mit.edu	36	12	5024204	5024204	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	5024204	5024204	KCNA5	12	G	G	A	47
TSPAN19	144448	broad.mit.edu	36	12	83941283	83941283	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	83941283	83941283	TSPAN19	12	A	A	G	5
TPTE2	93492	broad.mit.edu	36	13	18939412	18939412	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	18939412	18939412	TPTE2	13	A	A	G	8
ATP7B	540	broad.mit.edu	36	13	51407060	51407060	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	51407060	51407060	ATP7B	13	G	G	A	38
SLITRK5	26050	broad.mit.edu	36	13	87128419	87128419	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	87128419	87128419	SLITRK5	13	A	A	G	15
FARP1	10160	broad.mit.edu	36	13	97841105	97841105	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	97841105	97841105	FARP1	13	A	A	T	9
GMPR2	51292	broad.mit.edu	36	14	23777660	23777660	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	23777660	23777660	GMPR2	14	G	G	C	36
SYNE2	23224	broad.mit.edu	36	14	63588192	63588192	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	63588192	63588192	SYNE2	14	T	T	C	56
KIAA0247	9766	broad.mit.edu	36	14	69241113	69241113	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	69241113	69241113	KIAA0247	14	C	C	A	32
EPB42	2038	broad.mit.edu	36	15	41287794	41287794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	41287794	41287794	EPB42	15	A	A	T	8
DUOX1	53905	broad.mit.edu	36	15	43230189	43230189	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	43230189	43230189	DUOX1	15	C	C	T	32
C16orf91	283951	broad.mit.edu	36	16	1419278	1419278	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	1419278	1419278	C16orf91	16	C	C	A	30
TMC7	79905	broad.mit.edu	36	16	18964167	18964167	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	18964167	18964167	TMC7	16	T	T	A	55
RABEP2	79874	broad.mit.edu	36	16	28829932	28829932	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	28829932	28829932	RABEP2	16	G	G	A	40
ABCC11	85320	broad.mit.edu	36	16	46787704	46787704	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Nonsense_Mutation	SNP	46787704	46787704	ABCC11	16	C	C	A	30
CCDC113	29070	broad.mit.edu	36	16	56841436	56841436	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	56841436	56841436	CCDC113	16	C	C	T	30
CDH16	1014	broad.mit.edu	36	16	65504955	65504955	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	65504955	65504955	CDH16	16	T	T	A	56
PRDM7	11105	broad.mit.edu	36	16	88654404	88654404	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	88654404	88654404	PRDM7	16	T	T	C	54
MYO15A	51168	broad.mit.edu	36	17	17995484	17995484	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	17995484	17995484	MYO15A	17	T	T	A	56
KRT35	3886	broad.mit.edu	36	17	36886883	36886883	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	36886883	36886883	KRT35	17	T	T	G	60
MBTD1	54799	broad.mit.edu	36	17	46627708	46627708	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	46627708	46627708	MBTD1	17	C	C	A	30
USHBP1	83878	broad.mit.edu	36	19	17227269	17227269	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	17227269	17227269	USHBP1	19	C	C	T	24
MEGF8	1954	broad.mit.edu	36	19	47531122	47531122	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	47531122	47531122	MEGF8	19	G	G	A	45
ZNF235	9310	broad.mit.edu	36	19	49483755	49483755	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	49483755	49483755	ZNF235	19	A	A	T	3
FBXO46	23403	broad.mit.edu	36	19	50907085	50907085	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	50907085	50907085	FBXO46	19	G	G	A	45
PGLYRP1	8993	broad.mit.edu	36	19	51214337	51214337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	51214337	51214337	PGLYRP1	19	C	C	T	29
HRC	3270	broad.mit.edu	36	19	54349106	54349106	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	54349106	54349106	HRC	19	T	T	C	54
CACNG7	59284	broad.mit.edu	36	19	59137263	59137263	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	59137263	59137263	CACNG7	19	C	C	T	23
LILRA3	11026	broad.mit.edu	36	19	59495393	59495393	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	59495393	59495393	LILRA3	19	G	G	T	42
RDH13	112724	broad.mit.edu	36	19	60248389	60248389	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Nonsense_Mutation	SNP	60248389	60248389	RDH13	19	G	G	C	36
LPIN1	23175	broad.mit.edu	36	2	11862055	11862055	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	11862055	11862055	LPIN1	2	A	A	G	7
CD8A	925	broad.mit.edu	36	2	86871055	86871055	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	86871055	86871055	CD8A	2	C	C	T	31
ARHGAP15	55843	broad.mit.edu	36	2	143909649	143909649	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	143909649	143909649	ARHGAP15	2	G	G	T	36
TTN	7273	broad.mit.edu	36	2	179136181	179136181	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	179136181	179136181	TTN	2	A	A	G	16
SGOL2	151246	broad.mit.edu	36	2	201146632	201146632	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	201146632	201146632	SGOL2	2	G	G	T	36
TNS1	7145	broad.mit.edu	36	2	218386664	218386664	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	218386664	218386664	TNS1	2	T	T	C	55
UGT1A8	54576	broad.mit.edu	36	2	234191325	234191325	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Nonsense_Mutation	SNP	234191325	234191325	UGT1A8	2	C	C	G	29
RIN2	54453	broad.mit.edu	36	20	19818273	19818273	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	19818273	19818273	RIN2	20	G	G	T	39
FOXA2	3170	broad.mit.edu	36	20	22511750	22511750	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	22511750	22511750	FOXA2	20	T	T	G	62
NDUFV3	4731	broad.mit.edu	36	21	43202198	43202198	+	Nonstop_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Nonstop_Mutation	SNP	43202198	43202198	NDUFV3	21	T	T	G	55
RFTN1	23180	broad.mit.edu	36	3	16333734	16333734	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Nonsense_Mutation	SNP	16333734	16333734	RFTN1	3	G	G	A	38
SCN11A	11280	broad.mit.edu	36	3	38916410	38916411	+	Missense_Mutation	DNP	TG	TG	AT	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	DNP	38916410	38916411	SCN11A	3	TG	TG	AT	51
OR5H2	79310	broad.mit.edu	36	3	99484483	99484483	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	99484483	99484483	OR5H2	3	G	G	A	41
MORC1	27136	broad.mit.edu	36	3	110305385	110305385	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Splice_Site_SNP	SNP	110305385	110305385	MORC1	3	C	C	A	18
SLCO2A1	6578	broad.mit.edu	36	3	135137337	135137337	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	135137337	135137337	SLCO2A1	3	G	G	C	35
P2RY1	5028	broad.mit.edu	36	3	154036300	154036300	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	154036300	154036300	P2RY1	3	G	G	A	39
MFN1	55669	broad.mit.edu	36	3	180549437	180549437	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	180549437	180549437	MFN1	3	T	T	A	64
EHHADH	1962	broad.mit.edu	36	3	186393440	186393440	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	186393440	186393440	EHHADH	3	C	C	G	21
MASP1	5648	broad.mit.edu	36	3	188457170	188457170	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	188457170	188457170	MASP1	3	C	C	A	25
BOD1L	259282	broad.mit.edu	36	4	13212791	13212791	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	13212791	13212791	BOD1L	4	T	T	C	61
ZCCHC4	29063	broad.mit.edu	36	4	24944072	24944072	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	24944072	24944072	ZCCHC4	4	A	A	C	5
ARAP2	116984	broad.mit.edu	36	4	35906815	35906816	+	Missense_Mutation	DNP	CC	CC	AT	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	DNP	35906815	35906816	ARAP2	4	CC	CC	AT	30
ARAP2	116984	broad.mit.edu	36	4	35907369	35907369	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	35907369	35907369	ARAP2	4	C	C	T	25
NHEDC1	150159	broad.mit.edu	36	4	104089882	104089882	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	104089882	104089882	NHEDC1	4	A	A	G	11
DKK2	27123	broad.mit.edu	36	4	108066444	108066444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	108066444	108066444	DKK2	4	G	G	C	39
FGA	2243	broad.mit.edu	36	4	155725231	155725231	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	155725231	155725231	FGA	4	A	A	T	7
FSTL5	56884	broad.mit.edu	36	4	162621631	162621631	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	162621631	162621631	FSTL5	4	T	T	A	56
TARS	6897	broad.mit.edu	36	5	33481256	33481256	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	33481256	33481256	TARS	5	G	G	A	35
C7	730	broad.mit.edu	36	5	41000604	41000604	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	41000604	41000604	C7	5	A	A	C	9
RREB1	6239	broad.mit.edu	36	6	7185714	7185714	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	7185714	7185714	RREB1	6	A	A	G	14
TRIM10	10107	broad.mit.edu	36	6	30229753	30229753	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	30229753	30229753	TRIM10	6	C	C	T	31
VARS2	57176	broad.mit.edu	36	6	30998935	30998935	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	30998935	30998935	VARS2	6	G	G	T	38
TFEB	7942	broad.mit.edu	36	6	41763652	41763652	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	41763652	41763652	TFEB	6	C	C	G	23
BAI3	577	broad.mit.edu	36	6	70127958	70127958	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	70127958	70127958	BAI3	6	C	C	A	21
PTPRK	5796	broad.mit.edu	36	6	128339861	128339861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	128339861	128339861	PTPRK	6	G	G	T	48
UTRN	7402	broad.mit.edu	36	6	144814287	144814287	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	144814287	144814287	UTRN	6	A	A	G	12
GPER	2852	broad.mit.edu	36	7	1098327	1098327	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	1098327	1098327	GPER	7	T	T	A	62
CDK13	8621	broad.mit.edu	36	7	40094368	40094368	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	40094368	40094368	CDK13	7	G	G	T	43
MUC17	140453	broad.mit.edu	36	7	100473368	100473368	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	100473368	100473368	MUC17	7	C	C	A	32
ZNF777	27153	broad.mit.edu	36	7	148760491	148760491	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	148760491	148760491	ZNF777	7	C	C	A	25
MLL3	58508	broad.mit.edu	36	7	151509577	151509577	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	151509577	151509577	MLL3	7	G	G	C	43
MYOM2	9172	broad.mit.edu	36	8	2076203	2076203	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	2076203	2076203	MYOM2	8	C	C	A	18
PTK2B	2185	broad.mit.edu	36	8	27359323	27359323	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	27359323	27359323	PTK2B	8	G	G	T	42
KCNU1	157855	broad.mit.edu	36	8	36811520	36811520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	36811520	36811520	KCNU1	8	C	C	T	28
GPR124	25960	broad.mit.edu	36	8	37816892	37816892	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	37816892	37816892	GPR124	8	C	C	G	22
TGS1	96764	broad.mit.edu	36	8	56886027	56886027	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	56886027	56886027	TGS1	8	C	C	G	26
MOS	4342	broad.mit.edu	36	8	57188055	57188055	+	Nonstop_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Nonstop_Mutation	SNP	57188055	57188055	MOS	8	T	T	A	58
LRRC6	23639	broad.mit.edu	36	8	133706813	133706813	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	133706813	133706813	LRRC6	8	G	G	T	48
RFX3	5991	broad.mit.edu	36	9	3320481	3320481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	3320481	3320481	RFX3	9	C	C	T	17
DDX58	23586	broad.mit.edu	36	9	32477984	32477984	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	32477984	32477984	DDX58	9	G	G	C	33
SMU1	55234	broad.mit.edu	36	9	33066580	33066580	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Splice_Site_SNP	SNP	33066580	33066580	SMU1	9	C	C	T	20
ANKS6	203286	broad.mit.edu	36	9	100570248	100570248	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	100570248	100570248	ANKS6	9	G	G	C	46
NR6A1	2649	broad.mit.edu	36	9	126356629	126356629	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	126356629	126356629	NR6A1	9	T	T	A	51
MAPKAP1	79109	broad.mit.edu	36	9	127474433	127474433	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	127474433	127474433	MAPKAP1	9	C	C	G	32
MXRA5	25878	broad.mit.edu	36	X	3251097	3251097	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	3251097	3251097	MXRA5	23	G	G	C	44
FRMPD4	9758	broad.mit.edu	36	X	12645760	12645760	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	12645760	12645760	FRMPD4	23	C	C	A	21
LOC340602	0	broad.mit.edu	36	X	51168089	51168089	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	51168089	51168089	LOC340602	23	C	C	T	17
ALAS2	212	broad.mit.edu	36	X	55058878	55058878	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	55058878	55058878	ALAS2	23	C	C	T	20
CHM	1121	broad.mit.edu	36	X	85123432	85123432	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	85123432	85123432	CHM	23	A	A	T	3
PNMA5	114824	broad.mit.edu	36	X	151910376	151910376	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1110-01	Broad	Silent	SNP	151910376	151910376	PNMA5	23	T	T	C	56
TP53	7157	broad.mit.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-1110-01	Broad	Missense_Mutation	SNP	7519128	7519128	TP53	17	C	C	T	25
PRR11	55771	broad.mit.edu	36	17	54617249	54617265	+	Frame_Shift_Del	DEL	TCCTGGAACTTCAATTT	-	TCCTGGAACTTCAATTT	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-1110-01	Broad	Frame_Shift_Del	DEL	54617249	54617265	PRR11	17	TCCTGGAACTTCAATTT	-	TCCTGGAACTTCAATTT	50
MRPL4	51073	broad.mit.edu	36	19	10231467	10231473	+	Frame_Shift_Del	DEL	CGGCCAC	-	CGGCCAC	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-1110-01	Broad	Frame_Shift_Del	DEL	10231467	10231473	MRPL4	19	CGGCCAC	-	CGGCCAC	27
CCDC9	26093	broad.mit.edu	36	19	52466411	52466425	+	In_Frame_Del	DEL	ACGAGGGGGAAGAGA	-	ACGAGGGGGAAGAGA	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-1110-01	Broad	In_Frame_Del	DEL	52466411	52466425	CCDC9	19	ACGAGGGGGAAGAGA	-	ACGAGGGGGAAGAGA	10
CCDC158	339965	broad.mit.edu	36	4	77495492	77495507	+	Splice_Site_Del	DEL	GCAACCCACCTTATTT	-	GCAACCCACCTTATTT	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-1110-01	Broad	Splice_Site_Del	DEL	77495492	77495507	CCDC158	4	GCAACCCACCTTATTT	-	GCAACCCACCTTATTT	34
CA1	759	broad.mit.edu	36	8	86433099	86433099	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-1110-01	Broad	Frame_Shift_Del	DEL	86433099	86433099	CA1	8	A	-	A	9
FAM166B	730112	broad.mit.edu	36	9	35552438	35552439	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-23-1110-01	TCGA-23-1110-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-1110-01	Broad	Frame_Shift_Ins	INS	35552438	35552439	FAM166B	9	-	G	-	59
