Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
VPS13D	55187	broad.mit.edu	36	1	12325666	12325666	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	12325666	12325666	VPS13D	1	A	A	C	4
EPHA2	1969	broad.mit.edu	36	1	16324359	16324359	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	16324359	16324359	EPHA2	1	G	G	A	38
USP24	23358	broad.mit.edu	36	1	55397282	55397282	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	55397282	55397282	USP24	1	G	G	C	43
RSBN1	54665	broad.mit.edu	36	1	114156376	114156376	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	114156376	114156376	RSBN1	1	G	G	T	38
CD84	8832	broad.mit.edu	36	1	158801896	158801896	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	158801896	158801896	CD84	1	C	C	T	27
C12orf40	283461	broad.mit.edu	36	12	38330387	38330387	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	38330387	38330387	C12orf40	12	C	C	T	20
SCN8A	6334	broad.mit.edu	36	12	50401812	50401812	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Nonsense_Mutation	SNP	50401812	50401812	SCN8A	12	C	C	A	17
TIMELESS	8914	broad.mit.edu	36	12	55113888	55113888	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	55113888	55113888	TIMELESS	12	T	T	A	54
PLEKHG7	440107	broad.mit.edu	36	12	91672073	91672073	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	91672073	91672073	PLEKHG7	12	G	G	A	37
UBE3B	89910	broad.mit.edu	36	12	108452778	108452778	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	108452778	108452778	UBE3B	12	G	G	T	36
ZNF268	10795	broad.mit.edu	36	12	132274621	132274621	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	132274621	132274621	ZNF268	12	C	C	G	32
ADAD2	161931	broad.mit.edu	36	16	82786063	82786063	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	82786063	82786063	ADAD2	16	C	C	T	26
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	byHapMap	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	7518263	7518263	TP53	17	C	C	T	23
PNKP	11284	broad.mit.edu	36	19	55057676	55057676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	55057676	55057676	PNKP	19	G	G	T	40
CCDC104	112942	broad.mit.edu	36	2	55609605	55609605	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	55609605	55609605	CCDC104	2	G	G	T	34
UXS1	80146	broad.mit.edu	36	2	106128237	106128237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	106128237	106128237	UXS1	2	C	C	G	19
RBMS1	5937	broad.mit.edu	36	2	161058099	161058099	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Nonsense_Mutation	SNP	161058099	161058099	RBMS1	2	G	G	A	46
SP100	6672	broad.mit.edu	36	2	231077183	231077183	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Nonsense_Mutation	SNP	231077183	231077183	SP100	2	C	C	T	17
LBP	3929	broad.mit.edu	36	20	36417215	36417215	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	36417215	36417215	LBP	20	G	G	C	41
SCN5A	6331	broad.mit.edu	36	3	38621301	38621301	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	38621301	38621301	SCN5A	3	G	G	A	40
CCDC37	348807	broad.mit.edu	36	3	127637157	127637157	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	127637157	127637157	CCDC37	3	C	C	T	27
USP13	8975	broad.mit.edu	36	3	180961631	180961631	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Silent	SNP	180961631	180961631	USP13	3	C	C	G	23
B3GNT5	84002	broad.mit.edu	36	3	184470994	184470994	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1419-01	Broad	Nonsense_Mutation	SNP	184470994	184470994	B3GNT5	3	C	C	A	19
MAGEF1	64110	broad.mit.edu	36	3	185912196	185912196	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Silent	SNP	185912196	185912196	MAGEF1	3	G	G	A	42
PDLIM5	10611	broad.mit.edu	36	4	95797707	95797707	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	95797707	95797707	PDLIM5	4	C	C	A	22
ADAM29	11086	broad.mit.edu	36	4	176133429	176133429	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	176133429	176133429	ADAM29	4	G	G	A	35
PLCXD3	345557	broad.mit.edu	36	5	41546284	41546284	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Silent	SNP	41546284	41546284	PLCXD3	5	T	T	A	55
LATS1	9113	broad.mit.edu	36	6	150043055	150043055	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	150043055	150043055	LATS1	6	C	C	T	27
LAMB1	3912	broad.mit.edu	36	7	107357276	107357276	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	107357276	107357276	LAMB1	7	A	A	G	4
KIAA1797	54914	broad.mit.edu	36	9	20875120	20875120	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	20875120	20875120	KIAA1797	9	T	T	A	64
MOBKL2B	79817	broad.mit.edu	36	9	27445162	27445162	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Silent	SNP	27445162	27445162	MOBKL2B	9	G	G	A	45
PCSK5	5125	broad.mit.edu	36	9	77974504	77974504	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	77974504	77974504	PCSK5	9	G	G	C	33
ROR2	4920	broad.mit.edu	36	9	93526859	93526859	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	93526859	93526859	ROR2	9	C	C	A	29
OR2K2	26248	broad.mit.edu	36	9	113129786	113129786	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	113129786	113129786	OR2K2	9	T	T	A	49
NLGN4X	57502	broad.mit.edu	36	X	5831627	5831627	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	5831627	5831627	NLGN4X	23	G	G	T	36
DOCK11	139818	broad.mit.edu	36	X	117590359	117590359	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Missense_Mutation	SNP	117590359	117590359	DOCK11	23	G	G	C	33
DDX26B	203522	broad.mit.edu	36	X	134534421	134534421	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Nonsense_Mutation	SNP	134534421	134534421	DDX26B	23	G	G	T	33
SPANXN2	494119	broad.mit.edu	36	X	142623233	142623233	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1419-01	Broad	Silent	SNP	142623233	142623233	SPANXN2	23	G	G	T	47
TP53BP1	7158	broad.mit.edu	36	15	41555128	41555133	+	In_Frame_Del	DEL	AAGCCA	-	AAGCCA	novel	Unknown	TCGA-24-1419-01	TCGA-24-1419-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-1419-01	Broad	In_Frame_Del	DEL	41555128	41555133	TP53BP1	15	AAGCCA	-	AAGCCA	9
