Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
EIF3I	8668	broad.mit.edu	36	1	32460735	32460735	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	32460735	32460735	EIF3I	1	C	C	G	24
ZNF518A	9849	broad.mit.edu	36	10	97906333	97906333	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	97906333	97906333	ZNF518A	10	G	G	C	33
TLL2	7093	broad.mit.edu	36	10	98195864	98195864	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	98195864	98195864	TLL2	10	T	T	G	58
C10orf137	26098	broad.mit.edu	36	10	127414447	127414447	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	127414447	127414447	C10orf137	10	C	C	A	32
USP35	57558	broad.mit.edu	36	11	77585054	77585054	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	77585054	77585054	USP35	11	C	C	T	24
GAB2	9846	broad.mit.edu	36	11	77615374	77615374	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	77615374	77615374	GAB2	11	G	G	T	36
FAT3	120114	broad.mit.edu	36	11	92070253	92070254	+	Missense_Mutation	DNP	TC	TC	CA	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	DNP	92070253	92070254	FAT3	11	TC	TC	CA	62
AMOTL1	154810	broad.mit.edu	36	11	94173036	94173036	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	94173036	94173036	AMOTL1	11	G	G	C	33
AASDHPPT	60496	broad.mit.edu	36	11	105453820	105453820	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	105453820	105453820	AASDHPPT	11	A	A	G	3
SIK3	23387	broad.mit.edu	36	11	116239701	116239701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	116239701	116239701	SIK3	11	G	G	A	38
AKAP11	11215	broad.mit.edu	36	13	41771737	41771737	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	41771737	41771737	AKAP11	13	T	T	C	53
HCN4	10021	broad.mit.edu	36	15	71403146	71403146	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	71403146	71403146	HCN4	15	G	G	C	44
SNAI3	333929	broad.mit.edu	36	16	87275107	87275107	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	87275107	87275107	SNAI3	16	A	A	G	11
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	G	A	39
KLHL14	57565	broad.mit.edu	36	18	28514460	28514460	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	28514460	28514460	KLHL14	18	C	C	T	32
NETO1	81832	broad.mit.edu	36	18	68602040	68602040	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01			T	A	T	T	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	68602040	68602040	NETO1	18	T	T	A	55
EMR1	2015	broad.mit.edu	36	19	6888605	6888605	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	6888605	6888605	EMR1	19	C	C	A	22
C19orf53	28974	broad.mit.edu	36	19	13746312	13746312	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	13746312	13746312	C19orf53	19	G	G	C	36
C19orf53	28974	broad.mit.edu	36	19	13749905	13749905	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	13749905	13749905	C19orf53	19	G	G	A	40
ZFP112	7771	broad.mit.edu	36	19	49523493	49523493	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	49523493	49523493	ZFP112	19	T	T	C	62
FBXO46	23403	broad.mit.edu	36	19	50907058	50907058	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	50907058	50907058	FBXO46	19	C	C	T	25
CYTH2	9266	broad.mit.edu	36	19	53667472	53667472	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	53667472	53667472	CYTH2	19	G	G	T	43
PAX8	7849	broad.mit.edu	36	2	113715597	113715597	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	113715597	113715597	PAX8	2	C	C	A	18
CSF2RB	1439	broad.mit.edu	36	22	35664095	35664095	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01			G	T	G	T	Unknown	Valid	Germline	x	x	Sequenom_PCR_WGA			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	35664095	35664095	CSF2RB	22	G	G	T	48
LDOC1L	84247	broad.mit.edu	36	22	43272056	43272056	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	43272056	43272056	LDOC1L	22	T	T	C	55
ZCWPW2	152098	broad.mit.edu	36	3	28429761	28429761	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	28429761	28429761	ZCWPW2	3	A	A	G	5
WDR82	80335	broad.mit.edu	36	3	52270475	52270475	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	52270475	52270475	WDR82	3	C	C	G	32
ADAMTS16	170690	broad.mit.edu	36	5	5371344	5371344	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	5371344	5371344	ADAMTS16	5	C	C	T	31
FBXW11	23291	broad.mit.edu	36	5	171251159	171251159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	171251159	171251159	FBXW11	5	G	G	A	39
CYP21A2	1589	broad.mit.edu	36	6	32114262	32114262	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	32114262	32114262	CYP21A2	6	C	C	T	30
TRRAP	8295	broad.mit.edu	36	7	98391788	98391788	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	98391788	98391788	TRRAP	7	C	C	T	31
MOGAT3	346606	broad.mit.edu	36	7	100628804	100628804	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	100628804	100628804	MOGAT3	7	C	C	A	30
WDR91	29062	broad.mit.edu	36	7	134531481	134531481	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	134531481	134531481	WDR91	7	C	C	G	30
MFHAS1	9258	broad.mit.edu	36	8	8787473	8787473	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	8787473	8787473	MFHAS1	8	C	C	A	23
SPATC1	375686	broad.mit.edu	36	8	145167078	145167078	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	145167078	145167078	SPATC1	8	C	C	T	22
ZNF7	7553	broad.mit.edu	36	8	146038292	146038292	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	146038292	146038292	ZNF7	8	G	G	T	42
FAM120C	54954	broad.mit.edu	36	X	54123438	54123438	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	54123438	54123438	FAM120C	23	T	T	A	56
ARMCX2	9823	broad.mit.edu	36	X	100798316	100798316	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1551-01	Broad	Silent	SNP	100798316	100798316	ARMCX2	23	G	G	A	40
MAGEA11	4110	broad.mit.edu	36	X	148576548	148576548	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Silent	SNP	148576548	148576548	MAGEA11	23	A	A	G	12
L1CAM	3897	broad.mit.edu	36	X	152789738	152789738	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1551-01	Broad	Missense_Mutation	SNP	152789738	152789738	L1CAM	23	G	G	A	46
UBL4B	164153	broad.mit.edu	36	1	110457186	110457186	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-1551-01	Broad	Frame_Shift_Del	DEL	110457186	110457186	UBL4B	1	G	-	G	35
NRXN2	9379	broad.mit.edu	36	11	64131861	64131862	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-24-1551-01	TCGA-24-1551-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-1551-01	Broad	Frame_Shift_Ins	INS	64131861	64131862	NRXN2	11	-	G	-	59
