Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PROKR2	128674	genome.wustl.edu	36	20	5230949	5230949	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	5230949	5230949	PROKR2	20	G	G	A	37
TP53	7157	genome.wustl.edu	36	17	7520317	7520317	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	7520317	7520317	TP53	17	T	T	A	55
PLCB4	5332	genome.wustl.edu	36	20	9236464	9236464	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	9236464	9236464	PLCB4	20	G	G	A	47
ENSG00000111788	0	genome.wustl.edu	36	12	9351076	9351076	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	9351076	9351076	ENSG00000111788	12	G	G	C	45
OVOS	408186	genome.wustl.edu	36	12	9604705	9604705	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	9604705	9604705	OVOS	12	T	T	C	52
ESF1	51575	genome.wustl.edu	36	20	13701204	13701204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	13701204	13701204	ESF1	20	C	C	T	20
ENSG00000215561	0	genome.wustl.edu	36	21	14228174	14228174	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	14228174	14228174	ENSG00000215561	21	C	C	A	32
PTPRO	5800	genome.wustl.edu	36	12	15552818	15552818	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	15552818	15552818	PTPRO	12	C	C	T	19
RSC1A1	6248	genome.wustl.edu	36	1	15859164	15859164	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	15859164	15859164	RSC1A1	1	C	C	G	32
LOC646057		genome.wustl.edu	36	15	18452955	18452955	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	18452955	18452955	LOC646057	15	G	G	A	39
CHEK2	11200	genome.wustl.edu	36	22	27422947	27422947	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27422947	27422947	CHEK2	22	C	T	T	19
ZNF267	10308	genome.wustl.edu	36	16	31834750	31834750	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	31834750	31834750	ZNF267	16	G	G	C	36
FHOD3	80206	genome.wustl.edu	36	18	32445993	32445993	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	A	A	A	A	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	32445993	32445993	FHOD3	18	C	A	A	22
CUL7	9820	genome.wustl.edu	36	6	43127973	43127973	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	43127973	43127973	CUL7	6	G	G	A	37
PSMC3	5702	genome.wustl.edu	36	11	47398461	47398461	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	47398461	47398461	PSMC3	11	C	C	A	32
VEZF1	7716	genome.wustl.edu	36	17	53411654	53411654	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	53411654	53411654	VEZF1	17	G	G	A	47
ALPK2	115701	genome.wustl.edu	36	18	54355093	54355093	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	54355093	54355093	ALPK2	18	C	C	T	24
ZNF716	441234	genome.wustl.edu	36	7	57532718	57532718	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	57532718	57532718	ZNF716	7	T	T	G	50
UBXN2B	137886	genome.wustl.edu	36	8	59514807	59514807	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	59514807	59514807	UBXN2B	8	G	G	A	41
IPMK	253430	genome.wustl.edu	36	10	59656818	59656818	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	59656818	59656818	IPMK	10	G	G	A	46
KIR2DL3	3804	genome.wustl.edu	36	19	59955724	59955724	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	59955724	59955724	KIR2DL3	19	C	C	T	26
NT5E	4907	genome.wustl.edu	36	6	86253849	86253849	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	86253849	86253849	NT5E	6	A	A	G	4
DCN	1634	genome.wustl.edu	36	12	90082549	90082549	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	90082549	90082549	DCN	12	G	G	T	45
SERPINA5	5104	genome.wustl.edu	36	14	94128255	94128255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	94128255	94128255	SERPINA5	14	G	G	A	36
DPY19L4	286148	genome.wustl.edu	36	8	95861770	95861770	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	95861770	95861770	DPY19L4	8	T	T	A	52
MUM1L1	139221	genome.wustl.edu	36	X	105337677	105337677	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	105337677	105337677	MUM1L1	23	C	C	G	21
ABHD13	84945	genome.wustl.edu	36	13	107679821	107679821	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	107679821	107679821	ABHD13	13	C	C	T	21
PKNOX2	63876	genome.wustl.edu	36	11	124743010	124743010	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	124743010	124743010	PKNOX2	11	C	C	T	29
SYCE1	93426	genome.wustl.edu	36	10	135219524	135219524	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	135219524	135219524	SYCE1	10	T	T	A	63
KLHL24	54800	genome.wustl.edu	36	3	184851541	184851541	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	184851541	184851541	KLHL24	3	C	C	T	27
FAT1	2195	genome.wustl.edu	36	4	187777869	187777869	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	187777869	187777869	FAT1	4	C	C	T	25
NF1	4763	genome.wustl.edu	36	17	26687915	26687916	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Ins	INS	26687915	26687916	NF1	17	-	-	T	12
BRCA2	675	genome.wustl.edu	36	13	31870626	31870626	+	Nonsense_Mutation	SNP	A	A	T	rs11571833	byCluster	TCGA-24-1562-01	TCGA-24-1562-01	A	T	A	T	A	T	Unknown	Valid	Germline	Phase_III	Capture	454_PCR_WGA;Sanger_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	31870626	31870626	BRCA2	13	A	A	T	13
XPO6	23214	genome.wustl.edu	36	16	28030740	28030740	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	T	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	28030740	28030740	XPO6	16	C	C	T	27
TMEM43	79188	genome.wustl.edu	36	3	14158264	14158264	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01	TCGA-24-1562-01	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	14158264	14158264	TMEM43	3	C	C	T	31
TNPO2	30000	genome.wustl.edu	36	19	12675323	12675323	+	Missense_Mutation	SNP	G	G	C		Unknown	TCGA-24-1562-01	TCGA-24-1562-01	G	G	G	C	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	12675323	12675323	TNPO2	19	G	G	C	33
