Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ECE1	1889	broad.mit.edu	36	1	21471847	21471847	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	21471847	21471847	ECE1	1	C	C	T	26
MACF1	23499	broad.mit.edu	36	1	39626441	39626441	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	39626441	39626441	MACF1	1	A	A	T	12
SLC6A9	6536	broad.mit.edu	36	1	44236171	44236171	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	44236171	44236171	SLC6A9	1	G	G	A	46
C1orf175	374977	broad.mit.edu	36	1	54944762	54944762	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	54944762	54944762	C1orf175	1	C	C	T	19
WDR78	79819	broad.mit.edu	36	1	67163048	67163048	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	67163048	67163048	WDR78	1	A	A	T	5
SARS	6301	broad.mit.edu	36	1	109580633	109580633	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	109580633	109580633	SARS	1	G	G	A	39
ACP6	51205	broad.mit.edu	36	1	145593007	145593007	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	145593007	145593007	ACP6	1	T	T	C	62
CA14	23632	broad.mit.edu	36	1	148502327	148502327	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	148502327	148502327	CA14	1	A	A	C	1
INTS3	65123	broad.mit.edu	36	1	151991504	151991504	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	151991504	151991504	INTS3	1	C	C	T	29
RUSC1	23623	broad.mit.edu	36	1	153561519	153561519	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	153561519	153561519	RUSC1	1	C	C	G	32
HKDC1	80201	broad.mit.edu	36	10	70695406	70695406	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	70695406	70695406	HKDC1	10	C	C	G	19
TIAL1	7073	broad.mit.edu	36	10	121331469	121331469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	121331469	121331469	TIAL1	10	G	G	A	48
TACC2	10579	broad.mit.edu	36	10	123999132	123999132	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	123999132	123999132	TACC2	10	T	T	C	55
CARS	833	broad.mit.edu	36	11	2979816	2979816	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	2979816	2979816	CARS	11	A	A	C	9
NAV2	89797	broad.mit.edu	36	11	19927130	19927130	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	19927130	19927130	NAV2	11	T	T	A	51
EEF1G	1937	broad.mit.edu	36	11	62083878	62083878	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	62083878	62083878	EEF1G	11	G	G	T	47
NEU3	10825	broad.mit.edu	36	11	74395108	74395108	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	74395108	74395108	NEU3	11	C	C	T	17
FAT3	120114	broad.mit.edu	36	11	92173680	92173680	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	92173680	92173680	FAT3	11	T	T	G	63
NPAT	4863	broad.mit.edu	36	11	107549693	107549693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	107549693	107549693	NPAT	11	G	G	C	48
OR8G2	26492	broad.mit.edu	36	11	123601219	123601219	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	123601219	123601219	OR8G2	11	C	C	A	25
ALG10B	144245	broad.mit.edu	36	12	37000607	37000607	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	37000607	37000607	ALG10B	12	G	G	A	46
KRT4	3851	broad.mit.edu	36	12	51487870	51487870	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Nonsense_Mutation	SNP	51487870	51487870	KRT4	12	C	C	A	29
DCTN2	10540	broad.mit.edu	36	12	56212815	56212815	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	56212815	56212815	DCTN2	12	C	C	T	25
SBNO1	55206	broad.mit.edu	36	12	122355111	122355112	+	Missense_Mutation	DNP	AA	AA	TT	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	DNP	122355111	122355112	SBNO1	12	AA	AA	TT	13
CCNA1	8900	broad.mit.edu	36	13	35913268	35913268	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	35913268	35913268	CCNA1	13	T	T	G	55
LPAR6	10161	broad.mit.edu	36	13	47884286	47884286	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	47884286	47884286	LPAR6	13	G	G	A	33
EBPL	84650	broad.mit.edu	36	13	49163537	49163538	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	DNP	49163537	49163538	EBPL	13	CC	CC	AG	26
ZFYVE26	23503	broad.mit.edu	36	14	67319340	67319340	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	67319340	67319340	ZFYVE26	14	G	G	T	39
MYO5A	4644	broad.mit.edu	36	15	50398718	50398718	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	50398718	50398718	MYO5A	15	T	T	C	51
HERC1	8925	broad.mit.edu	36	15	61792814	61792814	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	61792814	61792814	HERC1	15	A	A	G	11
AXIN1	8312	broad.mit.edu	36	16	283557	283557	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	283557	283557	AXIN1	16	C	C	T	28
NUBP1	4682	broad.mit.edu	36	16	10758121	10758121	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	10758121	10758121	NUBP1	16	G	G	C	35
CTCF	10664	broad.mit.edu	36	16	66220846	66220846	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	66220846	66220846	CTCF	16	C	C	T	27
EDC4	23644	broad.mit.edu	36	16	66467492	66467492	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	66467492	66467492	EDC4	16	G	G	A	33
HS3ST3A1	9955	broad.mit.edu	36	17	13340754	13340754	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	13340754	13340754	HS3ST3A1	17	T	T	G	59
ZNF287	57336	broad.mit.edu	36	17	16396269	16396269	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	16396269	16396269	ZNF287	17	G	G	A	48
MPRIP	23164	broad.mit.edu	36	17	17002561	17002561	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	17002561	17002561	MPRIP	17	G	G	T	39
MPRIP	23164	broad.mit.edu	36	17	17002564	17002565	+	Missense_Mutation	DNP	CC	CC	GG	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	DNP	17002564	17002565	MPRIP	17	CC	CC	GG	18
UBTF	7343	broad.mit.edu	36	17	39643263	39643263	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	39643263	39643263	UBTF	17	A	A	G	7
MYCBPAP	84073	broad.mit.edu	36	17	45951439	45951439	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	45951439	45951439	MYCBPAP	17	G	G	C	40
SGSH	6448	broad.mit.edu	36	17	75799370	75799370	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	75799370	75799370	SGSH	17	G	G	A	43
TJP3	27134	broad.mit.edu	36	19	3686866	3686866	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Splice_Site_SNP	SNP	3686866	3686866	TJP3	19	G	G	T	33
MUC16	94025	broad.mit.edu	36	19	8947617	8947617	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	8947617	8947617	MUC16	19	G	G	T	41
ZNF560	147741	broad.mit.edu	36	19	9442068	9442068	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	9442068	9442068	ZNF560	19	C	C	A	24
DNMT1	1786	broad.mit.edu	36	19	10126610	10126610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	10126610	10126610	DNMT1	19	T	T	C	58
KEAP1	9817	broad.mit.edu	36	19	10471575	10471575	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	10471575	10471575	KEAP1	19	G	G	T	43
POU2F2	5452	broad.mit.edu	36	19	47291605	47291605	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	47291605	47291605	POU2F2	19	G	G	A	39
ZNF135	7694	broad.mit.edu	36	19	63271204	63271204	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Nonsense_Mutation	SNP	63271204	63271204	ZNF135	19	C	C	T	27
C2orf63	130162	broad.mit.edu	36	2	55293345	55293345	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	55293345	55293345	C2orf63	2	G	G	C	36
YSK4	80122	broad.mit.edu	36	2	135461854	135461854	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	135461854	135461854	YSK4	2	C	C	A	18
TTN	7273	broad.mit.edu	36	2	179342825	179342825	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	179342825	179342825	TTN	2	C	C	A	17
TTLL4	9654	broad.mit.edu	36	2	219322240	219322240	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	219322240	219322240	TTLL4	2	G	G	C	34
PPP1R7	5510	broad.mit.edu	36	2	241748516	241748516	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	241748516	241748516	PPP1R7	2	T	T	C	57
TAF4	6874	broad.mit.edu	36	20	59984726	59984726	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	59984726	59984726	TAF4	20	T	T	C	59
PRPF6	24148	broad.mit.edu	36	20	62103026	62103026	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	62103026	62103026	PRPF6	20	T	T	A	62
C21orf91	54149	broad.mit.edu	36	21	18091034	18091034	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	18091034	18091034	C21orf91	21	G	G	C	48
ETS2	2114	broad.mit.edu	36	21	39108660	39108660	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	39108660	39108660	ETS2	21	G	G	A	33
UBASH3A	53347	broad.mit.edu	36	21	42736496	42736496	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	42736496	42736496	UBASH3A	21	C	C	T	27
EDEM1	9695	broad.mit.edu	36	3	5224779	5224779	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	5224779	5224779	EDEM1	3	T	T	G	59
MYRIP	25924	broad.mit.edu	36	3	40060605	40060605	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	40060605	40060605	MYRIP	3	G	G	T	34
DNAH12	201625	broad.mit.edu	36	3	57484582	57484582	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	57484582	57484582	DNAH12	3	A	A	G	4
LRIG1	26018	broad.mit.edu	36	3	66513795	66513795	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	66513795	66513795	LRIG1	3	G	G	T	42
LMOD3	56203	broad.mit.edu	36	3	69240939	69240939	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	69240939	69240939	LMOD3	3	C	C	T	19
FAM55C	91775	broad.mit.edu	36	3	103023042	103023042	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	103023042	103023042	FAM55C	3	A	A	G	8
PIK3CA	5290	broad.mit.edu	36	3	180400347	180400347	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	180400347	180400347	PIK3CA	3	A	A	G	4
TMEM44	93109	broad.mit.edu	36	3	195817598	195817598	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Nonsense_Mutation	SNP	195817598	195817598	TMEM44	3	C	C	A	32
SULT1E1	6783	broad.mit.edu	36	4	70748004	70748004	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Splice_Site_SNP	SNP	70748004	70748004	SULT1E1	4	C	C	T	18
TLL1	7092	broad.mit.edu	36	4	167197827	167197827	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	167197827	167197827	TLL1	4	C	C	A	25
GPBP1	65056	broad.mit.edu	36	5	56562771	56562771	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	56562771	56562771	GPBP1	5	G	G	A	47
GPR98	84059	broad.mit.edu	36	5	90142094	90142094	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	90142094	90142094	GPR98	5	A	A	G	3
PDLIM4	8572	broad.mit.edu	36	5	131634520	131634520	+	Missense_Mutation	SNP	C	C	A	rs62384133	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	131634520	131634520	PDLIM4	5	C	C	A	17
PCDHA1	56147	broad.mit.edu	36	5	140369490	140369490	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	140369490	140369490	PCDHA1	5	C	C	T	23
CLINT1	9685	broad.mit.edu	36	5	157165621	157165621	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	157165621	157165621	CLINT1	5	G	G	A	40
IRF4	3662	broad.mit.edu	36	6	339886	339887	+	Missense_Mutation	DNP	GA	GA	TC	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	DNP	339886	339887	IRF4	6	GA	GA	TC	33
EXOC2	55770	broad.mit.edu	36	6	517577	517577	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	517577	517577	EXOC2	6	C	C	A	28
MYLK4	340156	broad.mit.edu	36	6	2616580	2616580	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	2616580	2616580	MYLK4	6	T	T	C	56
TXNDC5	81567	broad.mit.edu	36	6	7834806	7834806	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	7834806	7834806	TXNDC5	6	C	C	G	17
SPDEF	25803	broad.mit.edu	36	6	34620121	34620121	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	34620121	34620121	SPDEF	6	C	C	A	24
TFAP2D	83741	broad.mit.edu	36	6	50804977	50804977	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	50804977	50804977	TFAP2D	6	G	G	C	47
TINAG	27283	broad.mit.edu	36	6	54322624	54322624	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	54322624	54322624	TINAG	6	T	T	G	51
DGKB	1607	broad.mit.edu	36	7	14613634	14613634	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	14613634	14613634	DGKB	7	T	T	C	49
TAF6	6878	broad.mit.edu	36	7	99549243	99549243	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	99549243	99549243	TAF6	7	T	T	G	56
MUC17	140453	broad.mit.edu	36	7	100466962	100466962	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	100466962	100466962	MUC17	7	C	C	G	30
SRPK2	6733	broad.mit.edu	36	7	104570849	104570849	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	104570849	104570849	SRPK2	7	C	C	G	24
SSPO	23145	broad.mit.edu	36	7	149159224	149159225	+	Missense_Mutation	DNP	GG	GG	TA	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	DNP	149159224	149159225	SSPO	7	GG	GG	TA	47
TUSC3	7991	broad.mit.edu	36	8	15632544	15632544	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Splice_Site_SNP	SNP	15632544	15632544	TUSC3	8	A	A	G	15
STC1	6781	broad.mit.edu	36	8	23758256	23758256	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	23758256	23758256	STC1	8	A	A	T	12
SNTG1	54212	broad.mit.edu	36	8	51525826	51525826	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	51525826	51525826	SNTG1	8	G	G	A	48
CSMD3	114788	broad.mit.edu	36	8	113488085	113488085	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Nonsense_Mutation	SNP	113488085	113488085	CSMD3	8	T	T	A	56
COLEC10	10584	broad.mit.edu	36	8	120187426	120187426	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	120187426	120187426	COLEC10	8	G	G	C	41
COL14A1	7373	broad.mit.edu	36	8	121312914	121312914	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	121312914	121312914	COL14A1	8	T	T	C	60
ZHX2	22882	broad.mit.edu	36	8	124034733	124034733	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	124034733	124034733	ZHX2	8	G	G	C	42
PTK2	5747	broad.mit.edu	36	8	141840502	141840502	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Nonsense_Mutation	SNP	141840502	141840502	PTK2	8	G	G	A	40
CNTFR	1271	broad.mit.edu	36	9	34547627	34547627	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	34547627	34547627	CNTFR	9	G	G	T	34
SUSD3	203328	broad.mit.edu	36	9	94877923	94877923	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	94877923	94877923	SUSD3	9	C	C	A	18
DFNB31	25861	broad.mit.edu	36	9	116205413	116205413	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	116205413	116205413	DFNB31	9	G	G	A	33
LAMC3	10319	broad.mit.edu	36	9	132944454	132944454	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	132944454	132944454	LAMC3	9	C	C	A	18
C9orf171	389799	broad.mit.edu	36	9	134408211	134408211	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	134408211	134408211	C9orf171	9	C	C	A	26
CAMSAP1	157922	broad.mit.edu	36	9	137853528	137853528	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	137853528	137853528	CAMSAP1	9	G	G	A	46
FRMPD4	9758	broad.mit.edu	36	X	12646811	12646811	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	12646811	12646811	FRMPD4	23	C	C	T	21
RS1	6247	broad.mit.edu	36	X	18570134	18570134	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	18570134	18570134	RS1	23	A	A	C	11
RLIM	51132	broad.mit.edu	36	X	73728373	73728373	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	73728373	73728373	RLIM	23	G	G	A	45
NRK	203447	broad.mit.edu	36	X	105039944	105039944	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Missense_Mutation	SNP	105039944	105039944	NRK	23	A	A	T	7
COL4A6	1288	broad.mit.edu	36	X	107290440	107290440	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2035-01	Broad	Silent	SNP	107290440	107290440	COL4A6	23	C	C	T	25
OR52N2	390077	broad.mit.edu	36	11	5798297	5798332	+	In_Frame_Del	DEL	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	-	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2035-01	Broad	In_Frame_Del	DEL	5798297	5798332	OR52N2	11	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	-	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	26
BRCA1	672	broad.mit.edu	36	17	38469440	38469440	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2035-01	Broad	Frame_Shift_Del	DEL	38469440	38469440	BRCA1	17	C	-	C	30
PALLD	23022	broad.mit.edu	36	4	169669713	169669737	+	Frame_Shift_Del	DEL	GGGTGGCCCCCAGAGCCAGCTGTGT	-	GGGTGGCCCCCAGAGCCAGCTGTGT	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2035-01	Broad	Frame_Shift_Del	DEL	169669713	169669737	PALLD	4	GGGTGGCCCCCAGAGCCAGCTGTGT	-	GGGTGGCCCCCAGAGCCAGCTGTGT	35
C9orf72	203228	broad.mit.edu	36	9	27556898	27556918	+	In_Frame_Del	DEL	TTTCGAAGGATTTCTCCATTT	-	TTTCGAAGGATTTCTCCATTT	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2035-01	Broad	In_Frame_Del	DEL	27556898	27556918	C9orf72	9	TTTCGAAGGATTTCTCCATTT	-	TTTCGAAGGATTTCTCCATTT	52
TKTL1	8277	broad.mit.edu	36	X	153194190	153194202	+	Frame_Shift_Del	DEL	AAATTAATTGAGA	-	AAATTAATTGAGA	novel	Unknown	TCGA-24-2035-01	TCGA-24-2035-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2035-01	Broad	Frame_Shift_Del	DEL	153194190	153194202	TKTL1	23	AAATTAATTGAGA	-	AAATTAATTGAGA	5
