Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ZBTB48	3104	broad.mit.edu	36	1	6569905	6569905	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	6569905	6569905	ZBTB48	1	G	G	A	45
BAI2	576	broad.mit.edu	36	1	31969150	31969150	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	31969150	31969150	BAI2	1	C	C	T	21
RABGGTB	5876	broad.mit.edu	36	1	76032914	76032914	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	76032914	76032914	RABGGTB	1	A	A	G	15
ARHGAP29	9411	broad.mit.edu	36	1	94417975	94417975	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	94417975	94417975	ARHGAP29	1	T	T	C	49
RABGAP1L	9910	broad.mit.edu	36	1	173193654	173193654	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	173193654	173193654	RABGAP1L	1	G	G	C	48
ZNF238	10472	broad.mit.edu	36	1	242285143	242285143	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	242285143	242285143	ZNF238	1	C	C	T	27
ANKRD30A	91074	broad.mit.edu	36	10	37470980	37470980	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	37470980	37470980	ANKRD30A	10	C	C	T	31
MADD	8567	broad.mit.edu	36	11	47289922	47289922	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	47289922	47289922	MADD	11	G	G	C	48
OR4C15	81309	broad.mit.edu	36	11	55079253	55079253	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	55079253	55079253	OR4C15	11	G	G	C	48
MTA2	9219	broad.mit.edu	36	11	62122408	62122408	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	62122408	62122408	MTA2	11	C	C	A	32
CDC42BPG	55561	broad.mit.edu	36	11	64365872	64365872	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	64365872	64365872	CDC42BPG	11	C	C	G	28
FDXACB1	91893	broad.mit.edu	36	11	111254995	111254995	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	111254995	111254995	FDXACB1	11	C	C	T	21
GALNT6	11226	broad.mit.edu	36	12	50034495	50034495	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	50034495	50034495	GALNT6	12	C	C	T	30
SMARCC2	6601	broad.mit.edu	36	12	54854765	54854765	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	54854765	54854765	SMARCC2	12	T	T	A	63
NIACR2	8843	broad.mit.edu	36	12	121766190	121766190	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	121766190	121766190	NIACR2	12	C	C	T	23
SPERT	220082	broad.mit.edu	36	13	45185931	45185931	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	45185931	45185931	SPERT	13	T	T	A	55
NFATC4	4776	broad.mit.edu	36	14	23908629	23908629	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	23908629	23908629	NFATC4	14	C	C	A	22
C14orf115	55237	broad.mit.edu	36	14	73893552	73893552	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	73893552	73893552	C14orf115	14	C	C	T	27
MGA	23269	broad.mit.edu	36	15	39839925	39839925	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	39839925	39839925	MGA	15	G	G	A	39
DENND4A	10260	broad.mit.edu	36	15	63831868	63831868	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	63831868	63831868	DENND4A	15	G	G	A	40
CACNA1H	8912	broad.mit.edu	36	16	1200487	1200487	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	1200487	1200487	CACNA1H	16	G	G	T	42
ZNF646	9726	broad.mit.edu	36	16	30996303	30996303	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	30996303	30996303	ZNF646	16	C	C	G	28
MYLK3	91807	broad.mit.edu	36	16	45339385	45339385	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	45339385	45339385	MYLK3	16	G	G	T	42
PLEKHG4	25894	broad.mit.edu	36	16	65872183	65872183	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	65872183	65872183	PLEKHG4	16	C	C	T	28
SPAG7	9552	broad.mit.edu	36	17	4803656	4803656	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	4803656	4803656	SPAG7	17	C	C	T	19
TXNDC17	84817	broad.mit.edu	36	17	6486997	6486997	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	6486997	6486997	TXNDC17	17	T	T	G	54
TP53	7157	broad.mit.edu	36	17	7518901	7518901	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Splice_Site_SNP	SNP	7518901	7518901	TP53	17	C	C	A	18
MKS1	54903	broad.mit.edu	36	17	53638477	53638477	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Nonsense_Mutation	SNP	53638477	53638477	MKS1	17	G	G	A	46
ENPP7	339221	broad.mit.edu	36	17	75325572	75325572	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	75325572	75325572	ENPP7	17	C	C	T	19
LAMA3	3909	broad.mit.edu	36	18	19656271	19656271	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	19656271	19656271	LAMA3	18	A	A	C	16
PSPN	5623	broad.mit.edu	36	19	6326765	6326765	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	6326765	6326765	PSPN	19	G	G	A	39
SCN1B	6324	broad.mit.edu	36	19	40216445	40216445	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	40216445	40216445	SCN1B	19	G	G	A	34
SBSN	374897	broad.mit.edu	36	19	40709533	40709533	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	40709533	40709533	SBSN	19	C	C	A	22
FOXA3	3171	broad.mit.edu	36	19	51067737	51067737	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	51067737	51067737	FOXA3	19	C	C	T	19
NKG7	4818	broad.mit.edu	36	19	56567015	56567015	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	56567015	56567015	NKG7	19	G	G	T	34
ZFP28	140612	broad.mit.edu	36	19	61751016	61751016	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	61751016	61751016	ZFP28	19	C	C	G	32
SOS1	6654	broad.mit.edu	36	2	39066923	39066923	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	39066923	39066923	SOS1	2	G	G	C	35
MAP3K2	10746	broad.mit.edu	36	2	127799790	127799790	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	127799790	127799790	MAP3K2	2	C	C	G	29
LRP1B	53353	broad.mit.edu	36	2	140847100	140847100	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	140847100	140847100	LRP1B	2	C	C	T	17
SCN7A	6332	broad.mit.edu	36	2	167037189	167037189	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	167037189	167037189	SCN7A	2	A	A	T	5
XIRP2	129446	broad.mit.edu	36	2	167811897	167811897	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	167811897	167811897	XIRP2	2	C	C	A	28
ZNF804A	91752	broad.mit.edu	36	2	185509004	185509004	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	185509004	185509004	ZNF804A	2	C	C	A	31
ABCA12	26154	broad.mit.edu	36	2	215560750	215560750	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	215560750	215560750	ABCA12	2	A	A	G	8
ZNF142	7701	broad.mit.edu	36	2	219222123	219222123	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	219222123	219222123	ZNF142	2	T	T	C	58
ADA	100	broad.mit.edu	36	20	42684907	42684907	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	42684907	42684907	ADA	20	G	G	A	38
CECR5	27440	broad.mit.edu	36	22	15999025	15999025	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	15999025	15999025	CECR5	22	G	G	A	40
IL5RA	3568	broad.mit.edu	36	3	3112080	3112080	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	3112080	3112080	IL5RA	3	C	C	T	19
NBEAL2	23218	broad.mit.edu	36	3	47013841	47013841	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	47013841	47013841	NBEAL2	3	C	C	G	21
UBA7	7318	broad.mit.edu	36	3	49826037	49826037	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	49826037	49826037	UBA7	3	A	A	T	10
HTR1F	3355	broad.mit.edu	36	3	88123278	88123278	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	88123278	88123278	HTR1F	3	T	T	A	56
ZNF718	255403	broad.mit.edu	36	4	145481	145481	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	145481	145481	ZNF718	4	G	G	C	33
FAM193A	8603	broad.mit.edu	36	4	2618296	2618296	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	2618296	2618296	FAM193A	4	G	G	A	38
SKP2	6502	broad.mit.edu	36	5	36212823	36212823	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Splice_Site_SNP	SNP	36212823	36212823	SKP2	5	G	G	C	33
CMYA5	202333	broad.mit.edu	36	5	79069509	79069509	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	79069509	79069509	CMYA5	5	A	A	G	4
EDIL3	10085	broad.mit.edu	36	5	83438390	83438390	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	83438390	83438390	EDIL3	5	G	G	T	36
ADAMTS19	171019	broad.mit.edu	36	5	129047732	129047732	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	129047732	129047732	ADAMTS19	5	G	G	C	33
MGAT1	4245	broad.mit.edu	36	5	180151898	180151898	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	180151898	180151898	MGAT1	5	G	G	A	39
GFOD1	54438	broad.mit.edu	36	6	13473721	13473721	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	13473721	13473721	GFOD1	6	C	C	T	31
RPL10A	4736	broad.mit.edu	36	6	35544190	35544190	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	35544190	35544190	RPL10A	6	A	A	G	8
IBTK	25998	broad.mit.edu	36	6	82980899	82980899	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	82980899	82980899	IBTK	6	G	G	A	44
EPHA7	2045	broad.mit.edu	36	6	94035998	94035998	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	94035998	94035998	EPHA7	6	A	A	T	3
POPDC3	64208	broad.mit.edu	36	6	105713131	105713131	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	105713131	105713131	POPDC3	6	C	C	T	26
GJA1	2697	broad.mit.edu	36	6	121810772	121810772	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	121810772	121810772	GJA1	6	C	C	A	18
STX11	8676	broad.mit.edu	36	6	144549920	144549920	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	144549920	144549920	STX11	6	G	G	A	37
GRM1	2911	broad.mit.edu	36	6	146392580	146392580	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	146392580	146392580	GRM1	6	G	G	T	43
PKD1L1	168507	broad.mit.edu	36	7	47910608	47910608	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	47910608	47910608	PKD1L1	7	A	A	C	6
SAMD9L	219285	broad.mit.edu	36	7	92599149	92599149	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Nonsense_Mutation	SNP	92599149	92599149	SAMD9L	7	C	C	A	30
EMID2	136227	broad.mit.edu	36	7	100983345	100983345	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	100983345	100983345	EMID2	7	G	G	T	43
HR	55806	broad.mit.edu	36	8	22041017	22041017	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	22041017	22041017	HR	8	C	C	A	26
ST18	9705	broad.mit.edu	36	8	53234147	53234147	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	53234147	53234147	ST18	8	C	C	T	19
BICD2	23299	broad.mit.edu	36	9	94521098	94521098	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	94521098	94521098	BICD2	9	G	G	T	44
SLC34A3	142680	broad.mit.edu	36	9	139246415	139246415	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	139246415	139246415	SLC34A3	9	C	C	A	17
CTPS2	56474	broad.mit.edu	36	X	16606455	16606455	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	16606455	16606455	CTPS2	23	C	C	T	31
WAS	7454	broad.mit.edu	36	X	48432310	48432310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	48432310	48432310	WAS	23	C	C	T	30
LAS1L	81887	broad.mit.edu	36	X	64666232	64666232	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	64666232	64666232	LAS1L	23	A	A	C	5
EFNB1	1947	broad.mit.edu	36	X	67976977	67976977	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	67976977	67976977	EFNB1	23	C	C	T	19
NONO	4841	broad.mit.edu	36	X	70431090	70431090	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	70431090	70431090	NONO	23	T	T	C	56
DACH2	117154	broad.mit.edu	36	X	85836795	85836795	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Silent	SNP	85836795	85836795	DACH2	23	T	T	A	54
FMR1NB	158521	broad.mit.edu	36	X	146897883	146897883	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2400-01	Broad	Missense_Mutation	SNP	146897883	146897883	FMR1NB	23	G	G	C	44
NBPF16	728936	broad.mit.edu	36	1	147019954	147019960	+	Frame_Shift_Del	DEL	TTATCTT	-	TTATCTT	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-25-2400-01	Broad	Frame_Shift_Del	DEL	147019954	147019960	NBPF16	1	TTATCTT	-	TTATCTT	52
KRTAP5-5	439915	broad.mit.edu	36	11	1608162	1608191	+	In_Frame_Del	DEL	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	-	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	novel	Unknown	TCGA-25-2400-01	TCGA-25-2400-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-25-2400-01	Broad	In_Frame_Del	DEL	1608162	1608191	KRTAP5-5	11	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	-	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	24
