Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	Oncotatorv0393GAF20hg19Feb2011dbSNPbuild132UniProtRelease2011_6	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	newbase	context_orig	context65	gene_name	categ	categ_ignoring_null_categ
OBFC1	79991	broad.mit.edu	37	10	105657388	105657388	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:105657388A>C	uc001kxl.2	-	c.671T>G	c.(670-672)TTT>TGT	p.F224C	OBFC1_uc001kxm.2_Missense_Mutation_p.F224C|OBFC1_uc001kxn.2_Non-coding_Transcript	NM_024928	NP_079204	Q9H668	STN1_HUMAN	oligonucleotide/oligosaccharide-binding fold	224					telomere maintenance via telomere lengthening		protein binding|single-stranded telomeric DNA binding			ovary(1)	1		Colorectal(252;0.178)		Epithelial(162;3.39e-10)|all cancers(201;1.32e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0151)										0.669725	268.094961	270.875255	73	36	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	105657388	105657388	11212	10	A	C	C	C	13	1	OBFC1	4	4
GPR158	57512	broad.mit.edu	37	10	25887829	25887829	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:25887829A>G	uc001isj.2	+	c.3274A>G	c.(3274-3276)ACT>GCT	p.T1092A	GPR158_uc001isk.2_Missense_Mutation_p.T467A	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	1092	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)	7														0.619718	324.233652	326.020342	88	54	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	25887829	25887829	6938	10	A	G	G	G	130	10	GPR158	4	4
SFMBT2	57713	broad.mit.edu	37	10	7262456	7262456	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:7262456G>T	uc009xio.1	-	c.1247C>A	c.(1246-1248)GCT>GAT	p.A416D	SFMBT2_uc001ijn.1_Missense_Mutation_p.A416D|SFMBT2_uc010qay.1_Intron	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	416	MBT 4.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6														0.579545	318.557106	319.525473	102	74	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	7262456	7262456	14647	10	G	T	T	T	442	34	SFMBT2	2	2
DPAGT1	1798	broad.mit.edu	37	11	118971518	118971518	+	Silent	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:118971518G>A	uc001pvi.2	-	c.318C>T	c.(316-318)TGC>TGT	p.C106C	DPAGT1_uc001pvj.2_5'UTR|DPAGT1_uc009zaq.2_Non-coding_Transcript|DPAGT1_uc001pvk.2_Intron|DPAGT1_uc010ryz.1_Silent_p.C106C|DPAGT1_uc001pvm.1_5'UTR|DPAGT1_uc010rza.1_5'UTR	NM_001382	NP_001373	Q9H3H5	GPT_HUMAN	UDP-N-acetylglucosamine-dolichyl-phosphate	106	Helical; (Potential).				dolichol biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein oligomerization	integral to endoplasmic reticulum membrane|microsome	phospho-N-acetylmuramoyl-pentapeptide-transferase activity|transferase activity, transferring glycosyl groups|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity			breast(2)|ovary(1)	3	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.55e-05)								OREG0021396	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0.1875	24.557161	30.414754	12	52	KEEP	---	---	---	---	capture		Silent	SNP	118971518	118971518	4894	11	G	A	A	A	438	34	DPAGT1	2	2
ANO5	203859	broad.mit.edu	37	11	22281108	22281108	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:22281108G>A	uc001mqi.2	+	c.1451G>A	c.(1450-1452)CGC>CAC	p.R484H	ANO5_uc001mqj.2_Missense_Mutation_p.R483H	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	484	Extracellular (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4														0.142857	24.286843	39.766003	18	108	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	22281108	22281108	708	11	G	A	A	A	494	38	ANO5	1	1
TRAF6	7189	broad.mit.edu	37	11	36520069	36520069	+	Silent	SNP	A	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:36520069A>G	uc001mwr.1	-	c.418T>C	c.(418-420)TTG>CTG	p.L140L	TRAF6_uc001mws.1_Silent_p.L140L	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	140	Interaction with TAX1BP1.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell activation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|transcription repressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)								148				0.235294	126.417417	137.306537	40	130	KEEP	---	---	---	---	capture		Silent	SNP	36520069	36520069	16989	11	A	G	G	G	11	1	TRAF6	4	4
OR52M1	119772	broad.mit.edu	37	11	4566720	4566720	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:4566720G>T	uc010qyf.1	+	c.300G>T	c.(298-300)TTG>TTT	p.L100F		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	100	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)										0.118012	21.050858	44.10447	19	142	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	4566720	4566720	11536	11	G	T	T	T	607	47	OR52M1	2	2
MAPK8IP1	9479	broad.mit.edu	37	11	45926281	45926281	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:45926281C>T	uc001nbr.2	+	c.1789C>T	c.(1789-1791)CGC>TGC	p.R597C		NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting	597	PID.				vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(1)	1				GBM - Glioblastoma multiforme(35;0.231)										0.211009	52.270601	60.686242	23	86	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	45926281	45926281	9667	11	C	T	T	T	299	23	MAPK8IP1	1	1
OR4A47	403253	broad.mit.edu	37	11	48510483	48510483	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:48510483G>A	uc010rhx.1	+	c.139G>A	c.(139-141)GTA>ATA	p.V47I		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1														0.55	67.651474	67.738324	22	18	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	48510483	48510483	11448	11	G	A	A	A	520	40	OR4A47	1	1
GLYATL1	92292	broad.mit.edu	37	11	58723260	58723260	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:58723260G>T	uc001nnh.1	+	c.762G>T	c.(760-762)ATG>ATT	p.M254I	GLYATL1_uc001nnf.2_Missense_Mutation_p.M223I|GLYATL1_uc001nni.1_Missense_Mutation_p.M223I|GLYATL1_uc001nnj.1_Missense_Mutation_p.M223I	NM_080661	NP_542392	Q969I3	GLYL1_HUMAN	glycine-N-acyltransferase-like 1	223						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)									0.25	31.247087	34.203632	13	39	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	58723260	58723260	6748	11	G	T	T	T	611	47	GLYATL1	2	2
NPAS4	266743	broad.mit.edu	37	11	66189606	66189606	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:66189606G>T	uc001ohx.1	+	c.191G>T	c.(190-192)GGC>GTC	p.G64V	NPAS4_uc010rpc.1_5'UTR	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	64					transcription, DNA-dependent		DNA binding|signal transducer activity				0														0.144737	13.805507	23.020043	11	65	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	66189606	66189606	10969	11	G	T	T	T	546	42	NPAS4	2	2
CCDC87	55231	broad.mit.edu	37	11	66359594	66359594	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:66359594G>A	uc001oiq.3	-	c.893C>T	c.(892-894)TCC>TTC	p.S298F	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	298										ovary(1)	1														0.217647	78.437313	90.901002	37	133	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	66359594	66359594	2987	11	G	A	A	A	533	41	CCDC87	2	2
EIF4B	1975	broad.mit.edu	37	12	53412608	53412608	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:53412608G>A	uc010snu.1	+	c.178G>A	c.(178-180)GAC>AAC	p.D60N	EIF4B_uc009zmp.1_Non-coding_Transcript|EIF4B_uc001sbh.3_Missense_Mutation_p.D60N|EIF4B_uc010snv.1_Missense_Mutation_p.D60N|EIF4B_uc001sbi.2_5'UTR	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	60					insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2										304				0.297872	178.342453	186.935333	70	165	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	53412608	53412608	5218	12	G	A	A	A	585	45	EIF4B	2	2
LRRIQ1	84125	broad.mit.edu	37	12	85450634	85450634	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:85450634G>A	uc001tac.2	+	c.2063G>A	c.(2062-2064)AGT>AAT	p.S688N	LRRIQ1_uc001tab.1_Missense_Mutation_p.S688N|LRRIQ1_uc001taa.1_Missense_Mutation_p.S663N	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	688										ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(134;0.212)										0.205882	65.2177	76.131237	28	108	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	85450634	85450634	9405	12	G	A	A	A	468	36	LRRIQ1	2	2
ATP8A2	51761	broad.mit.edu	37	13	26343230	26343230	+	Silent	SNP	C	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:26343230C>A	uc001uqk.2	+	c.2431C>A	c.(2431-2433)CGG>AGG	p.R811R	ATP8A2_uc010tdi.1_Silent_p.R771R|ATP8A2_uc010tdj.1_Non-coding_Transcript|ATP8A2_uc010aaj.1_Silent_p.R361R	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	771	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)	3		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)										0.363636	77.906696	79.154445	28	49	KEEP	---	---	---	---	capture		Silent	SNP	26343230	26343230	1212	13	C	A	A	A	347	27	ATP8A2	1	1
ELF1	1997	broad.mit.edu	37	13	41507961	41507961	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:41507961T>A	uc001uxs.2	-	c.1460A>T	c.(1459-1461)CAG>CTG	p.Q487L	ELF1_uc010tfc.1_Missense_Mutation_p.Q463L|ELF1_uc010acd.2_Missense_Mutation_p.Q380L	NM_172373	NP_758961	P32519	ELF1_HUMAN	E74-like factor 1 (ets domain transcription	487					positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription activator activity			ovary(1)	1		Lung NSC(96;8.3e-05)|Prostate(109;0.0233)|Breast(139;0.0296)|Lung SC(185;0.0367)		all cancers(112;1.87e-08)|Epithelial(112;8.45e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000202)|GBM - Glioblastoma multiforme(144;0.00266)|BRCA - Breast invasive adenocarcinoma(63;0.072)										0.239234	124.454664	137.42542	50	159	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	41507961	41507961	5244	13	T	A	A	A	715	55	ELF1	3	3
DIS3	22894	broad.mit.edu	37	13	73333994	73333994	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:73333994G>C	uc001vix.3	-	c.2816C>G	c.(2815-2817)ACT>AGT	p.T939S	DIS3_uc001viy.3_Missense_Mutation_p.T909S|DIS3_uc001viz.2_Non-coding_Transcript	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	939					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding				0		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)							Multiple Myeloma(4;0.011)			0.24359	59.085125	63.75915	19	59	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	73333994	73333994	4714	13	G	C	C	C	468	36	DIS3	3	3
MYCBP2	23077	broad.mit.edu	37	13	77755944	77755944	+	Silent	SNP	A	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:77755944A>G	uc001vkf.2	-	c.4719T>C	c.(4717-4719)GAT>GAC	p.D1573D	MYCBP2_uc010aev.2_Silent_p.D977D	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1573					regulation of mitotic metaphase/anaphase transition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	anaphase-promoting complex	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|lung(2)|pancreas(1)	11		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)										0.303279	112.734542	116.944888	37	85	KEEP	---	---	---	---	capture		Silent	SNP	77755944	77755944	10413	13	A	G	G	G	102	8	MYCBP2	4	4
FLJ10357	55701	broad.mit.edu	37	14	21543035	21543035	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr14:21543035G>C	uc001vzp.2	+	c.1146G>C	c.(1144-1146)AAG>AAC	p.K382N	FLJ10357_uc001vzn.1_Missense_Mutation_p.K382N|FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_Non-coding_Transcript|FLJ10357_uc010tln.1_5'UTR	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	382	Gly-rich.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)										0.172043	39.339974	48.792553	16	77	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	21543035	21543035	6164	14	G	C	C	C	425	33	FLJ10357	3	3
RALGAPA1	253959	broad.mit.edu	37	14	36217939	36217939	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr14:36217939G>C	uc001wtj.2	-	c.1103C>G	c.(1102-1104)TCC>TGC	p.S368C	RALGAPA1_uc001wti.2_Missense_Mutation_p.S368C|RALGAPA1_uc010tpv.1_Missense_Mutation_p.S368C|RALGAPA1_uc010tpw.1_Missense_Mutation_p.S368C|RALGAPA1_uc001wtk.1_Missense_Mutation_p.S219C	NM_194301	NP_919277	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	368					activation of Ral GTPase activity|signal transduction	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4														0.586466	303.876482	304.744746	78	55	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	36217939	36217939	13473	14	G	C	C	C	533	41	RALGAPA1	3	3
MGAT2	4247	broad.mit.edu	37	14	50088220	50088220	+	Silent	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr14:50088220G>T	uc001wwr.2	+	c.234G>T	c.(232-234)GCG>GCT	p.A78A	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	78	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)													0.268293	27.807821	29.794525	11	30	KEEP	---	---	---	---	capture		Silent	SNP	50088220	50088220	9933	14	G	T	T	T	496	39	MGAT2	1	1
ZFYVE26	23503	broad.mit.edu	37	14	68274475	68274475	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr14:68274475G>T	uc001xka.2	-	c.526C>A	c.(526-528)CTT>ATT	p.L176I	ZFYVE26_uc010tsz.1_Non-coding_Transcript|ZFYVE26_uc001xkc.3_Missense_Mutation_p.L176I|ZFYVE26_uc010tta.1_Missense_Mutation_p.L176I	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	176					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	phosphatidylinositol-3-phosphate binding|protein binding|zinc ion binding	p.L176V(1)		ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)										0.14554	41.262806	67.048663	31	182	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	68274475	68274475	18258	14	G	T	T	T	442	34	ZFYVE26	2	2
TDP1	55775	broad.mit.edu	37	14	90499508	90499508	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr14:90499508C>G	uc001xxy.2	+	c.1703C>G	c.(1702-1704)GCC>GGC	p.A568G	TDP1_uc010atm.2_Non-coding_Transcript|TDP1_uc001xxz.2_Missense_Mutation_p.A568G|TDP1_uc010atn.2_Silent_p.G583G|TDP1_uc001xya.2_Missense_Mutation_p.A329G|TDP1_uc001xyb.2_Non-coding_Transcript|TDP1_uc010ato.2_Intron|TDP1_uc001xyd.1_Missense_Mutation_p.A183G	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	568					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)										0.485714	60.194119	60.199236	17	18	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	90499508	90499508	16254	14	C	G	G	G	338	26	TDP1	3	3
SERPINA11	256394	broad.mit.edu	37	14	94914835	94914835	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr14:94914835C>A	uc001ydd.1	-	c.277G>T	c.(277-279)GCT>TCT	p.A93S		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	93					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)										0.145695	30.417868	48.709919	22	129	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	94914835	94914835	14576	14	C	A	A	A	364	28	SERPINA11	2	2
MGA	23269	broad.mit.edu	37	15	41988517	41988517	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:41988517G>T	uc010ucy.1	+	c.1309G>T	c.(1309-1311)GAA>TAA	p.E437*	MGA_uc001zog.1_Nonsense_Mutation_p.E437*|MGA_uc010ucz.1_Nonsense_Mutation_p.E437*	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	437					regulation of transcription, DNA-dependent	MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulator activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|skin(1)	11		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)						606				0.474576	80.789887	80.823398	28	31	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	41988517	41988517	9930	15	G	T	T	T	429	33	MGA	5	2
C15orf48	84419	broad.mit.edu	37	15	45723236	45723236	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:45723236G>A	uc001zvg.2	+	c.74G>A	c.(73-75)GGT>GAT	p.G25D	C15orf48_uc001zvh.2_Missense_Mutation_p.G25D|MIR147B_hsa-mir-147b|MI0005544_5'Flank	NM_197955	NP_922946	Q9C002	NMES1_HUMAN	normal mucosa of esophagus specific 1	25						nucleus				ovary(1)	1		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.67e-16)|GBM - Glioblastoma multiforme(94;1.71e-06)										0.224719	41.758802	47.885947	20	69	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	45723236	45723236	1849	15	G	A	A	A	572	44	C15orf48	2	2
GRINL1A	81488	broad.mit.edu	37	15	58001463	58001463	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:58001463C>T	uc002aet.3	+	c.665C>T	c.(664-666)TCC>TTC	p.S222F	GCOM1_uc002aem.2_Intron|GCOM1_uc002aeq.2_Intron|GCOM1_uc002aen.2_Intron|GCOM1_uc010bfy.2_Intron|GCOM1_uc002aeo.2_Intron|GCOM1_uc002aep.2_Non-coding_Transcript|GCOM1_uc010bfx.2_Intron|GRINL1A_uc002aes.2_5'UTR|GRINL1A_uc002aev.1_3'UTR|GRINL1A_uc010ugu.1_Non-coding_Transcript|GRINL1A_uc002aeu.3_Missense_Mutation_p.S65F	NM_015532	NP_056347	P0CAP1	GCOM1_HUMAN	glutamate receptor, ionotropic, N-methyl	306	Potential.										0				all cancers(107;0.0697)|GBM - Glioblastoma multiforme(80;0.12)										0.176471	22.661435	29.367961	12	56	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	58001463	58001463	7065	15	C	T	T	T	390	30	GRINL1A	2	2
C16orf62	57020	broad.mit.edu	37	16	19702685	19702685	+	Silent	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr16:19702685C>T	uc002dgn.1	+	c.2538C>T	c.(2536-2538)AAC>AAT	p.N846N	C16orf62_uc002dgo.1_Silent_p.N753N|C16orf62_uc002dgp.1_Silent_p.N595N	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	846						integral to membrane				ovary(1)	1														0.18	14.644393	19.470109	9	41	KEEP	---	---	---	---	capture		Silent	SNP	19702685	19702685	1878	16	C	T	T	T	246	19	C16orf62	1	1
SLC13A2	9058	broad.mit.edu	37	17	26818601	26818601	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:26818601G>C	uc010wan.1	+	c.868G>C	c.(868-870)GCA>CCA	p.A290P	SLC13A2_uc010wal.1_Missense_Mutation_p.A198P|SLC13A2_uc010wam.1_Missense_Mutation_p.A197P|SLC13A2_uc002hbh.2_Missense_Mutation_p.A241P|SLC13A2_uc010wao.1_Missense_Mutation_p.A198P|SLC13A2_uc002hbi.2_Missense_Mutation_p.A170P	NM_001145975	NP_001139447	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform a	241	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)									0.141304	22.813722	34.259491	13	79	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	26818601	26818601	14887	17	G	C	C	C	494	38	SLC13A2	3	3
RNF135	84282	broad.mit.edu	37	17	29325909	29325909	+	Silent	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:29325909G>A	uc002hfz.2	+	c.999G>A	c.(997-999)GAG>GAA	p.E333E	RNF135_uc002hga.2_3'UTR|RNF135_uc010csm.2_3'UTR|RNF135_uc002hgb.2_3'UTR	NM_032322	NP_115698	Q8IUD6	RN135_HUMAN	ring finger protein 135 isoform 1	333	B30.2/SPRY.				innate immune response|negative regulation of type I interferon production|positive regulation of interferon-beta production|regulation of innate immune response	cytosol	protein binding|ribonucleoprotein binding|ubiquitin-protein ligase activity|zinc ion binding	p.?(1)		skin(1)	1		all_cancers(10;8.65e-08)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Myeloproliferative disorder(56;0.0255)												0.193548	26.758734	32.198619	12	50	KEEP	---	---	---	---	capture		Silent	SNP	29325909	29325909	13917	17	G	A	A	A	425	33	RNF135	2	2
CDK12	51755	broad.mit.edu	37	17	37627359	37627359	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:37627359T>C	uc010cvv.2	+	c.1274T>C	c.(1273-1275)GTA>GCA	p.V425A	CDK12_uc010wef.1_Missense_Mutation_p.V424A|CDK12_uc002hrw.3_Missense_Mutation_p.V425A	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	425					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity|RNA polymerase II transcription factor activity			ovary(8)|lung(2)|large_intestine(1)	11										277	TCGA Ovarian(9;0.13)			0.156463	54.850701	71.389074	23	124	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	37627359	37627359	3257	17	T	C	C	C	741	57	CDK12	4	4
SPIRE1	56907	broad.mit.edu	37	18	12546780	12546780	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr18:12546780C>G	uc002kre.2	-	c.496G>C	c.(496-498)GCT>CCT	p.A166P	SPIRE1_uc002krc.2_Non-coding_Transcript|SPIRE1_uc010wzw.1_Missense_Mutation_p.A46P|SPIRE1_uc010wzx.1_Intron|SPIRE1_uc010wzy.1_Missense_Mutation_p.A166P	NM_001128626	NP_001122098	Q08AE8	SPIR1_HUMAN	spire homolog 1 isoform a	166	KIND.					cytoskeleton|perinuclear region of cytoplasm	actin binding|zinc ion binding				0														0.139013	62.88017	90.952464	31	192	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	12546780	12546780	15584	18	C	G	G	G	364	28	SPIRE1	3	3
C18orf34	374864	broad.mit.edu	37	18	30913186	30913186	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr18:30913186C>A	uc010xbr.1	-	c.831G>T	c.(829-831)CAG>CAT	p.Q277H	C18orf34_uc002kxn.2_Missense_Mutation_p.Q277H|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.Q277H|C18orf34_uc002kxp.2_Missense_Mutation_p.Q277H	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	277	Potential.									ovary(1)	1														0.337209	74.739113	76.75948	29	57	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	30913186	30913186	1963	18	C	A	A	A	415	32	C18orf34	2	2
TYMS	7298	broad.mit.edu	37	18	670729	670729	+	Silent	SNP	C	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr18:670729C>G	uc010dka.1	+	c.594C>G	c.(592-594)CTC>CTG	p.L198L	TYMS_uc010dkb.1_Silent_p.L164L|TYMS_uc010dkc.1_Silent_p.L115L	NM_001071	NP_001062	P04818	TYSY_HUMAN	thymidylate synthase	198					DNA repair|DNA replication|phosphatidylinositol-mediated signaling|pyrimidine base metabolic process|pyrimidine nucleoside biosynthetic process|regulation of transcription involved in G1/S phase of mitotic cell cycle|response to organophosphorus	cytosol	thymidylate synthase activity				0					Capecitabine(DB01101)|Floxuridine(DB00322)|Fluorouracil(DB00544)|Gemcitabine(DB00441)|Leucovorin(DB00650)|Pemetrexed(DB00642)|Raltitrexed(DB00293)|Trifluridine(DB00432)									0.192308	119.327641	140.025809	45	189	KEEP	---	---	---	---	capture		Silent	SNP	670729	670729	17369	18	C	G	G	G	405	32	TYMS	3	3
PPP1R13L	10848	broad.mit.edu	37	19	45885837	45885837	+	Nonsense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:45885837C>T	uc002pbn.2	-	c.2396G>A	c.(2395-2397)TGG>TAG	p.W799*	PPP1R13L_uc002pbm.2_Nonsense_Mutation_p.W378*|PPP1R13L_uc002pbo.2_Nonsense_Mutation_p.W799*	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	799	SH3.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding				0		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		Pancreas(61;1447 1663 31419 50578)								0.2	35.088845	42.636086	18	72	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	45885837	45885837	12793	19	C	T	T	T	273	21	PPP1R13L	5	2
CGN	57530	broad.mit.edu	37	1	151498138	151498138	+	Silent	SNP	C	T	T	rs74665256	byFrequency;by1000genomes	TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:151498138C>T	uc009wmw.2	+	c.1635C>T	c.(1633-1635)GCC>GCT	p.A545A		NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	539	Glu-rich.|Potential.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)											0.168831	26.43018	34.423391	13	64	KEEP	---	---	---	---	capture		Silent	SNP	151498138	151498138	3436	1	C	T	T	T	288	23	CGN	1	1
FLG2	388698	broad.mit.edu	37	1	152323784	152323784	+	Missense_Mutation	SNP	A	T	T	rs113396101		TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:152323784A>T	uc001ezw.3	-	c.6478T>A	c.(6478-6480)TCT>ACT	p.S2160T		NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2160	Filaggrin 10.						calcium ion binding|structural molecule activity			ovary(9)|breast(1)	10	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)											0.2032	262.807193	313.91326	127	498	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	152323784	152323784	6161	1	A	T	T	T	130	10	FLG2	3	3
FCRL3	115352	broad.mit.edu	37	1	157666998	157666998	+	Nonsense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:157666998C>T	uc001fqz.3	-	c.776G>A	c.(775-777)TGG>TAG	p.W259*	FCRL3_uc001fqx.3_Non-coding_Transcript|FCRL3_uc001fqy.3_Non-coding_Transcript|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_Non-coding_Transcript|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frb.2_Nonsense_Mutation_p.W259*|FCRL3_uc001frc.1_Nonsense_Mutation_p.W259*	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	259	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)													0.139073	31.466448	50.482118	21	130	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	157666998	157666998	6033	1	C	T	T	T	273	21	FCRL3	5	2
FMO4	2329	broad.mit.edu	37	1	171293296	171293296	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:171293296C>T	uc001gho.2	+	c.341C>T	c.(340-342)ACG>ATG	p.T114M		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	114					oxidation-reduction process|xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					Pancreas(24;816 862 7754 7993 32832)				211				0.198036	252.713928	304.599262	121	490	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	171293296	171293296	6199	1	C	T	T	T	247	19	FMO4	1	1
GABRD	2563	broad.mit.edu	37	1	1961436	1961436	+	Silent	SNP	C	T	T	rs75511732		TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:1961436C>T	uc001aip.2	+	c.1074C>T	c.(1072-1074)AAC>AAT	p.N358N		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	358	Cytoplasmic (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)										0.141176	15.546369	26.107009	12	73	KEEP	---	---	---	---	capture		Silent	SNP	1961436	1961436	6420	1	C	T	T	T	246	19	GABRD	1	1
FMOD	2331	broad.mit.edu	37	1	203316507	203316507	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:203316507G>T	uc001gzr.2	-	c.892C>A	c.(892-894)CTA>ATA	p.L298I	FMOD_uc010pqi.1_Non-coding_Transcript	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	298	LRR 9.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)											0.279167	166.018966	176.548974	67	173	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	203316507	203316507	6201	1	G	T	T	T	438	34	FMOD	2	2
KCNK2	3776	broad.mit.edu	37	1	215259842	215259842	+	Nonsense_Mutation	SNP	A	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:215259842A>T	uc001hkq.2	+	c.178A>T	c.(178-180)AAG>TAG	p.K60*	KCNK2_uc001hko.2_Nonsense_Mutation_p.K56*|KCNK2_uc009xdm.2_Non-coding_Transcript|KCNK2_uc001hkp.2_Non-coding_Transcript|KCNK2_uc010pua.1_Non-coding_Transcript|KCNK2_uc001hkr.3_Nonsense_Mutation_p.K45*	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	60	Cytoplasmic (Potential).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)									0.490566	146.588542	146.59687	52	54	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	215259842	215259842	8371	1	A	T	T	T	117	9	KCNK2	5	3
FMN2	56776	broad.mit.edu	37	1	240371640	240371640	+	Silent	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:240371640G>A	uc010pye.1	+	c.3540G>A	c.(3538-3540)CCG>CCA	p.P1180P	FMN2_uc010pyd.1_Silent_p.P1176P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1176	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|large_intestine(1)|central_nervous_system(1)	9	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)							1289				0.466667	18.961002	18.97083	7	8	KEEP	---	---	---	---	capture		Silent	SNP	240371640	240371640	6192	1	G	A	A	A	483	38	FMN2	1	1
CCDC28B	79140	broad.mit.edu	37	1	32667694	32667694	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:32667694T>C	uc001buk.2	+	c.158T>C	c.(157-159)TTC>TCC	p.F53S	CCDC28B_uc001bul.1_Missense_Mutation_p.F53S	NM_024296	NP_077272	Q9BUN5	CC28B_HUMAN	coiled-coil domain containing 28B	53											0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)												0.175439	23.514229	29.181986	10	47	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	32667694	32667694	2925	1	T	C	C	C	806	62	CCDC28B	4	4
DNTTIP2	30836	broad.mit.edu	37	1	94342445	94342445	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:94342445G>A	uc001dqf.2	-	c.1046C>T	c.(1045-1047)TCA>TTA	p.S349L	DNTTIP2_uc010otm.1_Non-coding_Transcript|DNTTIP2_uc009wdo.1_Missense_Mutation_p.S144L	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	349					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)										0.14	21.77762	34.296967	14	86	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	94342445	94342445	4865	1	G	A	A	A	585	45	DNTTIP2	2	2
CHMP4B	128866	broad.mit.edu	37	20	32440005	32440005	+	Silent	SNP	A	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr20:32440005A>G	uc002xaa.2	+	c.606A>G	c.(604-606)AAA>AAG	p.K202K		NM_176812	NP_789782	Q9H444	CHM4B_HUMAN	chromatin modifying protein 4B	202					cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(1)	1														0.177778	147.044567	177.809744	56	259	KEEP	---	---	---	---	capture		Silent	SNP	32440005	32440005	3491	20	A	G	G	G	24	2	CHMP4B	4	4
CHRNA4	1137	broad.mit.edu	37	20	61990970	61990970	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr20:61990970C>T	uc002yes.2	-	c.158G>A	c.(157-159)CGA>CAA	p.R53Q	CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_Non-coding_Transcript|CHRNA4_uc010gke.1_5'UTR|CHRNA4_uc002yev.1_5'UTR|CHRNA4_uc010gkf.1_5'UTR	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	53	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)	1	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)									0.188034	40.342006	51.068723	22	95	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	61990970	61990970	3519	20	C	T	T	T	403	31	CHRNA4	1	1
CYYR1	116159	broad.mit.edu	37	21	27852642	27852642	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr21:27852642G>A	uc002yme.2	-	c.283C>T	c.(283-285)CGC>TGC	p.R95C	CYYR1_uc002ymd.2_Missense_Mutation_p.R95C|CYYR1_uc011ack.1_Non-coding_Transcript	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	95	Cytoplasmic (Potential).					integral to membrane					0														0.210526	89.440484	104.139848	40	150	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	27852642	27852642	4376	21	G	A	A	A	507	39	CYYR1	1	1
RWDD2B	10069	broad.mit.edu	37	21	30378852	30378852	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr21:30378852G>T	uc002yms.2	-	c.846C>A	c.(844-846)TTC>TTA	p.F282L	RWDD2B_uc002ymt.2_Missense_Mutation_p.F253L|RWDD2B_uc002ymu.2_Non-coding_Transcript|RWDD2B_uc002ymv.2_Missense_Mutation_p.F202L	NM_016940	NP_058636	P57060	RWD2B_HUMAN	RWD domain containing 2B	282											0														0.121622	17.136316	37.921485	18	130	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	30378852	30378852	14236	21	G	T	T	T	581	45	RWDD2B	2	2
KCNJ4	3761	broad.mit.edu	37	22	38824024	38824024	+	Silent	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr22:38824024C>T	uc003avs.1	-	c.114G>A	c.(112-114)AAG>AAA	p.K38K	KCNJ4_uc003avt.1_Silent_p.K38K	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	38	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)													0.419118	327.507889	329.058543	114	158	KEEP	---	---	---	---	capture		Silent	SNP	38824024	38824024	8358	22	C	T	T	T	259	20	KCNJ4	2	2
SAPS2	9701	broad.mit.edu	37	22	50875986	50875986	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr22:50875986T>G	uc003blb.1	+	c.1735T>G	c.(1735-1737)TTT>GTT	p.F579V	SAPS2_uc003bky.1_Missense_Mutation_p.F552V|SAPS2_uc003bkz.1_Missense_Mutation_p.F552V|SAPS2_uc003blc.2_Missense_Mutation_p.F579V|SAPS2_uc003bla.1_Missense_Mutation_p.F553V|SAPS2_uc003bld.1_Missense_Mutation_p.F111V	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	579						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)										0.294118	32.038058	33.326848	10	24	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	50875986	50875986	14318	22	T	G	G	G	780	60	SAPS2	4	4
NGEF	25791	broad.mit.edu	37	2	233757737	233757737	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:233757737C>T	uc002vts.2	-	c.1013G>A	c.(1012-1014)CGG>CAG	p.R338Q	NGEF_uc010zmm.1_Missense_Mutation_p.R61Q|NGEF_uc010fyg.1_Missense_Mutation_p.R246Q	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	338	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)										0.258065	59.25614	64.189837	24	69	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	233757737	233757737	10794	2	C	T	T	T	299	23	NGEF	1	1
CLEC4F	165530	broad.mit.edu	37	2	71036905	71036905	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:71036905C>G	uc002shf.2	-	c.1624G>C	c.(1624-1626)GAT>CAT	p.D542H	CLEC4F_uc010yqv.1_Missense_Mutation_p.D542H	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	542	Extracellular (Potential).|C-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						Colon(107;10 2157 6841 26035)								0.330709	136.115594	139.336776	42	85	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	71036905	71036905	3654	2	C	G	G	G	416	32	CLEC4F	3	3
CD200	4345	broad.mit.edu	37	3	112068659	112068659	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:112068659G>C	uc003dyw.2	+	c.870G>C	c.(868-870)CAG>CAC	p.Q290H	CD200_uc010hqd.1_Missense_Mutation_p.Q149H|CD200_uc003dyx.2_Missense_Mutation_p.Q265H|CD200_uc003dyy.2_Missense_Mutation_p.Q149H|CD200_uc003dyz.2_Missense_Mutation_p.Q191H	NM_001004196	NP_001004196	P41217	OX2G_HUMAN	CD200 antigen isoform b	265	Cytoplasmic (Potential).				regulation of immune response	integral to plasma membrane					0		Acute lymphoblastic leukemia(4;1.7e-08)|all_hematologic(4;8.82e-05)												0.279412	50.995197	53.971177	19	49	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	112068659	112068659	3107	3	G	C	C	C	451	35	CD200	3	3
PARP14	54625	broad.mit.edu	37	3	122446793	122446793	+	Silent	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:122446793C>T	uc003efq.3	+	c.5076C>T	c.(5074-5076)GTC>GTT	p.V1692V	PARP14_uc010hrk.2_Non-coding_Transcript|PARP14_uc003efr.2_Silent_p.V1409V	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	1692	PARP catalytic.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.0531)										0.6875	134.714095	136.713837	44	20	KEEP	---	---	---	---	capture		Silent	SNP	122446793	122446793	11875	3	C	T	T	T	366	29	PARP14	2	2
CP	1356	broad.mit.edu	37	3	148903209	148903209	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:148903209G>A	uc003ewy.3	-	c.2102C>T	c.(2101-2103)ACA>ATA	p.T701I	CP_uc011bnr.1_Non-coding_Transcript|CP_uc003ewx.3_Missense_Mutation_p.T482I|CP_uc003ewz.2_Missense_Mutation_p.T701I	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	701	Plastocyanin-like 4.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|oxidation-reduction process|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)									0.406977	194.296859	195.602523	70	102	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	148903209	148903209	3925	3	G	A	A	A	624	48	CP	2	2
IGSF10	285313	broad.mit.edu	37	3	151155695	151155695	+	Silent	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:151155695G>A	uc011bod.1	-	c.6654C>T	c.(6652-6654)CCC>CCT	p.P2218P	IGSF10_uc011bob.1_Silent_p.P245P|IGSF10_uc011boc.1_Silent_p.P197P	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2218	Ig-like C2-type 8.				cell differentiation|multicellular organismal development|ossification	extracellular region				ovary(4)|central_nervous_system(1)	5			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)											0.327273	150.885167	155.255402	54	111	KEEP	---	---	---	---	capture		Silent	SNP	151155695	151155695	7898	3	G	A	A	A	600	47	IGSF10	2	2
YEATS2	55689	broad.mit.edu	37	3	183476724	183476724	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:183476724G>A	uc003fly.2	+	c.1627G>A	c.(1627-1629)GGA>AGA	p.G543R		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	543					histone H3 acetylation|negative regulation of gene-specific transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	specific transcriptional repressor activity|TBP-class protein binding			ovary(2)|large_intestine(1)	3	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)											0.278571	110.659844	116.83823	39	101	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	183476724	183476724	18055	3	G	A	A	A	611	47	YEATS2	2	2
HGFAC	3083	broad.mit.edu	37	4	3446354	3446354	+	Nonsense_Mutation	SNP	T	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:3446354T>A	uc010icw.2	+	c.735T>A	c.(733-735)TGT>TGA	p.C245*	HGFAC_uc003ghc.2_Nonsense_Mutation_p.C245*	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	245	EGF-like 2.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)										0.266667	9.693265	10.431091	4	11	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	3446354	3446354	7370	4	T	A	A	A	751	58	HGFAC	5	3
TLR6	10333	broad.mit.edu	37	4	38829252	38829252	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:38829252G>C	uc003gtm.2	-	c.1843C>G	c.(1843-1845)CTC>GTC	p.L615V	TLR6_uc010ifg.1_Missense_Mutation_p.L615V	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	615	Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2														0.114286	41.544066	72.343571	24	186	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	38829252	38829252	16485	4	G	C	C	C	429	33	TLR6	3	3
POLR2B	5431	broad.mit.edu	37	4	57889908	57889908	+	Silent	SNP	T	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:57889908T>C	uc003hcl.1	+	c.2847T>C	c.(2845-2847)TAT>TAC	p.Y949Y	POLR2B_uc011cae.1_Silent_p.Y942Y|POLR2B_uc011caf.1_Silent_p.Y874Y|POLR2B_uc003hcm.1_Silent_p.Y442Y	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	949					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)													0.331081	178.439748	182.174264	49	99	KEEP	---	---	---	---	capture		Silent	SNP	57889908	57889908	12643	4	T	C	C	C	634	49	POLR2B	4	4
MEGF10	84466	broad.mit.edu	37	5	126676236	126676236	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:126676236C>A	uc003kuh.3	+	c.233C>A	c.(232-234)ACA>AAA	p.T78K	MEGF10_uc010jdc.1_Missense_Mutation_p.T78K|MEGF10_uc010jdd.1_Missense_Mutation_p.T78K|MEGF10_uc003kui.3_Missense_Mutation_p.T78K	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	78	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EMI.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)										0.142857	23.141618	33.466253	12	72	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	126676236	126676236	9849	5	C	A	A	A	221	17	MEGF10	2	2
DNAH5	1767	broad.mit.edu	37	5	13776694	13776694	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:13776694C>A	uc003jfd.2	-	c.9227G>T	c.(9226-9228)AGT>ATT	p.S3076I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3076	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|breast(1)|central_nervous_system(1)|pancreas(1)	17	Lung NSC(4;0.00476)													0.19375	72.02651	86.033507	31	129	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	13776694	13776694	4787	5	C	A	A	A	260	20	DNAH5	2	2
FBXO38	81545	broad.mit.edu	37	5	147782066	147782066	+	Silent	SNP	A	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:147782066A>G	uc003lpf.1	+	c.582A>G	c.(580-582)TTA>TTG	p.L194L	FBXO38_uc003lpg.1_Silent_p.L194L|FBXO38_uc003lph.2_Silent_p.L194L	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	194						cytoplasm|nucleus				ovary(4)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)											0.337349	94.876477	96.817562	28	55	KEEP	---	---	---	---	capture		Silent	SNP	147782066	147782066	5983	5	A	G	G	G	180	14	FBXO38	4	4
FBXL7	23194	broad.mit.edu	37	5	15928521	15928521	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:15928521T>G	uc003jfn.1	+	c.650T>G	c.(649-651)CTG>CGG	p.L217R		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	217	LRR 2.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3														0.201835	46.485464	55.493459	22	87	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	15928521	15928521	5961	5	T	G	G	G	715	55	FBXL7	4	4
RANBP17	64901	broad.mit.edu	37	5	170319516	170319516	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:170319516G>A	uc003mba.2	+	c.382G>A	c.(382-384)GTC>ATC	p.V128I	RANBP17_uc003max.1_Non-coding_Transcript|RANBP17_uc003may.1_Non-coding_Transcript|RANBP17_uc003maz.1_Non-coding_Transcript|RANBP17_uc010jjr.1_Non-coding_Transcript|RANBP17_uc003maw.2_Missense_Mutation_p.V128I|RANBP17_uc011dew.1_Missense_Mutation_p.V128I	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	128					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)							661				0.281106	149.158981	158.521067	61	156	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	170319516	170319516	13487	5	G	A	A	A	624	48	RANBP17	2	2
MRPL18	29074	broad.mit.edu	37	6	160218467	160218467	+	Nonsense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:160218467C>T	uc003qsw.3	+	c.388C>T	c.(388-390)CGA>TGA	p.R130*	MRPL18_uc010kkb.2_Non-coding_Transcript|PNLDC1_uc003qsx.1_5'Flank|PNLDC1_uc003qsy.1_5'Flank	NM_014161	NP_054880	Q9H0U6	RM18_HUMAN	mitochondrial ribosomal protein L18 precursor	130					translation	mitochondrial ribosome	structural constituent of ribosome				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.79e-06)										0.212766	44.48641	51.626155	20	74	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	160218467	160218467	10176	6	C	T	T	T	243	19	MRPL18	5	1
LAMB1	3912	broad.mit.edu	37	7	107615484	107615484	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:107615484C>T	uc003vev.2	-	c.1501G>A	c.(1501-1503)GGT>AGT	p.G501S	LAMB1_uc003vew.2_Missense_Mutation_p.G477S|LAMB1_uc003vex.2_Missense_Mutation_p.G477S|LAMB1_uc010ljn.1_Missense_Mutation_p.G563S	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	477	Laminin EGF-like 4.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)	4					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)									0.466667	93.998802	94.056456	28	32	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	107615484	107615484	8933	7	C	T	T	T	312	24	LAMB1	2	2
RNF148	378925	broad.mit.edu	37	7	122342609	122342609	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:122342609A>T	uc003vkk.1	-	c.196T>A	c.(196-198)TCT>ACT	p.S66T	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron|RNF148_uc010lkr.1_Intron	NM_198085	NP_932351	Q8N7C7	RN148_HUMAN	ring finger protein 148 precursor	66	PA.					integral to membrane	zinc ion binding				0														0.129032	16.013	32.641101	16	108	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	122342609	122342609	13926	7	A	T	T	T	117	9	RNF148	3	3
UBN2	254048	broad.mit.edu	37	7	138957090	138957090	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:138957090T>C	uc011kqr.1	+	c.1619T>C	c.(1618-1620)CTG>CCG	p.L540P	UBN2_uc003vuv.2_Missense_Mutation_p.L263P	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	540										ovary(1)	1														0.168421	72.773401	92.568284	32	158	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	138957090	138957090	17451	7	T	C	C	C	715	55	UBN2	4	4
SRCRB4D	136853	broad.mit.edu	37	7	76026893	76026893	+	Silent	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:76026893G>A	uc003ufb.2	-	c.810C>T	c.(808-810)AGC>AGT	p.S270S	ZP3_uc003ufc.3_5'UTR	NM_080744	NP_542782	Q8WTU2	SRB4D_HUMAN	scavenger receptor cysteine rich domain	270	SRCR 2.					extracellular region|membrane	scavenger receptor activity			pancreas(1)	1														0.454545	15.178391	15.197417	5	6	KEEP	---	---	---	---	capture		Silent	SNP	76026893	76026893	15651	7	G	A	A	A	542	42	SRCRB4D	2	2
SEMA3D	223117	broad.mit.edu	37	7	84702345	84702345	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:84702345A>C	uc003uic.2	-	c.428T>G	c.(427-429)ATA>AGA	p.I143R	SEMA3D_uc010led.2_Missense_Mutation_p.I143R|SEMA3D_uc010lee.1_Missense_Mutation_p.I143R	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	143	Sema.				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						Ovarian(63;442 1191 17318 29975 31528)								0.222222	52.412943	58.157206	18	63	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	84702345	84702345	14513	7	A	C	C	C	208	16	SEMA3D	4	4
ZNF804B	219578	broad.mit.edu	37	7	88966114	88966114	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:88966114C>T	uc011khi.1	+	c.3818C>T	c.(3817-3819)GCT>GTT	p.A1273V		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1273						intracellular	zinc ion binding			ovary(5)|pancreas(2)	7	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)											0.266026	210.702521	226.124219	83	229	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	88966114	88966114	18769	7	C	T	T	T	364	28	ZNF804B	2	2
SUN1	23353	broad.mit.edu	37	7	901102	901102	+	Splice_Site_SNP	SNP	G	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:901102G>A	uc011jvp.1	+	c.1864_splice	c.e16+1	p.G622_splice	GET4_uc003sjj.1_Splice_Site_SNP|SUN1_uc003sjf.2_Splice_Site_SNP_p.G539_splice|SUN1_uc011jvq.1_Splice_Site_SNP_p.G519_splice|SUN1_uc003sjg.2_Splice_Site_SNP_p.G527_splice|SUN1_uc011jvr.1_Splice_Site_SNP_p.G420_splice|SUN1_uc003sji.2_Splice_Site_SNP_p.G460_splice|SUN1_uc003sjk.2_Splice_Site_SNP_p.G261_splice	NM_001130965	NP_001124437			unc-84 homolog A isoform a						cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0														0.43662	180.423001	180.921275	62	80	KEEP	---	---	---	---	capture		Splice_Site_SNP	SNP	901102	901102	15911	7	G	A	A	A	572	44	SUN1	5	2
RIMS2	9699	broad.mit.edu	37	8	105263321	105263321	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:105263321G>T	uc003yls.2	+	c.3815G>T	c.(3814-3816)AGA>ATA	p.R1272I	RIMS2_uc003ylp.2_Missense_Mutation_p.R1254I|RIMS2_uc003ylw.2_Missense_Mutation_p.R1261I|RIMS2_uc003ylq.2_Missense_Mutation_p.R1068I|RIMS2_uc003ylr.2_Missense_Mutation_p.R1093I	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1316	C2 2.				intracellular protein transport	cell junction|presynaptic membrane	Rab GTPase binding|zinc ion binding			ovary(6)|lung(2)|breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)						p.R1272I(SUPHD1-Tumor)	728				0.80597	160.560119	166.403039	54	13	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	105263321	105263321	13845	8	G	T	T	T	429	33	RIMS2	2	2
CLVS1	157807	broad.mit.edu	37	8	62289222	62289222	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:62289222G>T	uc003xuh.2	+	c.514G>T	c.(514-516)GAT>TAT	p.D172Y	CLVS1_uc003xug.2_3'UTR|CLVS1_uc003xui.2_Non-coding_Transcript|CLVS1_uc010lyp.2_Missense_Mutation_p.D172Y	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	172	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(1)|skin(1)	2														0.116505	21.136934	50.970969	24	182	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	62289222	62289222	3709	8	G	T	T	T	429	33	CLVS1	2	2
DBC1	1620	broad.mit.edu	37	9	122000956	122000956	+	Missense_Mutation	SNP	G	A	A	rs1473785		TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr9:122000956G>A	uc004bkc.2	-	c.662C>T	c.(661-663)ACG>ATG	p.T221M	DBC1_uc004bkd.2_Missense_Mutation_p.T221M	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	221	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			ovary(2)|central_nervous_system(2)|large_intestine(1)	5														0.3	44.307815	46.466211	18	42	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	122000956	122000956	4418	9	G	A	A	A	520	40	DBC1	1	1
PRUNE2	158471	broad.mit.edu	37	9	79324375	79324375	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr9:79324375C>A	uc010mpk.2	-	c.2815G>T	c.(2815-2817)GAT>TAT	p.D939Y		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	939					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0														0.36	214.281138	218.17634	81	144	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	79324375	79324375	13092	9	C	A	A	A	416	32	PRUNE2	2	2
IL1RAPL2	26280	broad.mit.edu	37	X	105011610	105011610	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:105011610C>A	uc004elz.1	+	c.2017C>A	c.(2017-2019)CCT>ACT	p.P673T		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	673	Cytoplasmic (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3														0.123188	20.969053	40.149556	17	121	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	105011610	105011610	7963	23	C	A	A	A	338	26	IL1RAPL2	2	2
GDI1	2664	broad.mit.edu	37	X	153668809	153668809	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:153668809A>T	uc004fli.3	+	c.675A>T	c.(673-675)TTA>TTT	p.L225F	GDI1_uc011mzo.1_3'UTR|GDI1_uc004flj.2_5'Flank	NM_001493	NP_001484	P31150	GDIA_HUMAN	GDP dissociation inhibitor 1	225					protein transport|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|midbody	GTPase activator activity|protein binding				0	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)													0.204545	40.906622	48.030207	18	70	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	153668809	153668809	6588	23	A	T	T	T	206	16	GDI1	3	3
YY2	404281	broad.mit.edu	37	X	21861374	21861374	+	Silent	SNP	T	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:21861374T>A	uc010nfq.2	+	c.162T>A	c.(160-162)ACT>ACA	p.T54T	MBTPS2_uc004dae.2_Silent_p.T54T|MBTPS2_uc004dab.2_Silent_p.T54T	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	Error:Variant_position_missing_in_O15391_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2														0.153543	73.160261	102.316669	39	215	KEEP	---	---	---	---	capture		Silent	SNP	21861374	21861374	18092	23	T	A	A	A	704	55	YY2	3	3
FAM48B1	100130302	broad.mit.edu	37	X	24381622	24381622	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:24381622C>T	uc011mjx.1	+	c.745C>T	c.(745-747)CCA>TCA	p.P249S		NM_001136234	NP_001129706			hypothetical protein LOC100130302											kidney(1)	1														0.123596	22.508645	47.209228	22	156	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	24381622	24381622	5795	23	C	T	T	T	338	26	FAM48B1	2	2
CYBB	1536	broad.mit.edu	37	X	37651312	37651312	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:37651312G>C	uc004ddr.2	+	c.337G>C	c.(337-339)GCG>CCG	p.A113P	CYBB_uc011mke.1_Non-coding_Transcript|CYBB_uc011mkf.1_Missense_Mutation_p.A81P|CYBB_uc011mkg.1_5'UTR	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	113	Ferric oxidoreductase.|Helical; (Potential).				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2														0.151515	17.004551	24.683183	10	56	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	37651312	37651312	4298	23	G	C	C	C	611	47	CYBB	3	3
MTMR8	55613	broad.mit.edu	37	X	63488494	63488494	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:63488494C>T	uc004dvs.2	-	c.2038G>A	c.(2038-2040)GGG>AGG	p.G680R	MTMR8_uc011mou.1_Intron	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	680						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4														0.283019	37.798775	40.042691	15	38	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	63488494	63488494	10342	23	C	T	T	T	273	21	MTMR8	2	2
ZNF711	7552	broad.mit.edu	37	X	84526697	84526697	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:84526697T>A	uc004eeq.2	+	c.2287T>A	c.(2287-2289)TCT>ACT	p.S763T	ZNF711_uc004eeo.2_Missense_Mutation_p.S717T|ZNF711_uc004eep.2_Missense_Mutation_p.S717T|ZNF711_uc011mqy.1_Missense_Mutation_p.S316T	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	717	C2H2-type 11.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|transcription regulator activity|zinc ion binding			ovary(3)	3														0.121622	21.852155	42.607711	18	130	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	84526697	84526697	18712	23	T	A	A	A	650	50	ZNF711	3	3
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	-	-	rs35089393		TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:1651191_1651199delGGCTGTGGA	uc001lty.2	+	c.121_129delGGCTGTGGA	c.(121-129)GGCTGTGGAdel	p.GCG47del		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	47_49						keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)										0.37			32	55		---	---	---	---	capture_indel		In_Frame_Del	DEL	1651191	1651199	8886	11	GGCTGTGGA	-	-	-	507	39	KRTAP5-5	5	5
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	-	-			TCGA-38-4628-01	TCGA-38-4628-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:38079976_38079978delGCA	uc004ddy.1	-	c.68_70delTGC	c.(67-72)CTGCGC>CGC	p.L23del	SRPX_uc004ddz.1_In_Frame_Del_p.L23del|SRPX_uc011mkh.1_In_Frame_Del_p.L23del|SRPX_uc011mki.1_In_Frame_Del_p.L23del	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	23			Missing.		cell adhesion	cell surface|membrane					0												OREG0019726	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0.33			2	4		---	---	---	---	capture_indel		In_Frame_Del	DEL	38079976	38079978	15678	23	GCA	-	-	-	494	38	SRPX	5	5
