Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	Oncotatorv0393GAF20hg19Feb2011dbSNPbuild132UniProtRelease2011_6	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	newbase	context_orig	context65	gene_name	categ	categ_ignoring_null_categ
KCNK18	338567	broad.mit.edu	37	10	118969302	118969302	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:118969302C>A	uc010qsr.1	+	c.647C>A	c.(646-648)ACA>AAA	p.T216K		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	216	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Colorectal(252;0.19)		all cancers(201;0.0211)										0.26087	15.938821	17.12975	6	17	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	118969302	118969302	8370	10	C	A	A	A	221	17	KCNK18	2	2
PDZD8	118987	broad.mit.edu	37	10	119043731	119043731	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:119043731T>G	uc001lde.1	-	c.2513A>C	c.(2512-2514)GAA>GCA	p.E838A		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	838					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)										0.459459	126.047119	126.152571	34	40	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	119043731	119043731	12126	10	T	G	G	G	806	62	PDZD8	4	4
EBF3	253738	broad.mit.edu	37	10	131646712	131646712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:131646712G>A	uc001lki.1	-	c.1045C>T	c.(1045-1047)CAG>TAG	p.Q349*		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	358					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding|transcription regulator activity			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)										0.183673	20.944543	25.546096	9	40	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	131646712	131646712	5068	10	G	A	A	A	585	45	EBF3	5	2
NSUN6	221078	broad.mit.edu	37	10	18937479	18937479	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:18937479C>T	uc010qcp.1	-	c.171G>A	c.(169-171)GTG>GTA	p.V57V		NM_182543	NP_872349	Q8TEA1	NSUN6_HUMAN	NOL1/NOP2/Sun domain family, member 6	57							methyltransferase activity|RNA binding			ovary(2)	2										16				0.2	33.306664	39.168331	14	56	KEEP	---	---	---	---	capture		Silent	SNP	18937479	18937479	11087	10	C	T	T	T	366	29	NSUN6	2	2
MAPK8	5599	broad.mit.edu	37	10	49642948	49642948	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:49642948C>G	uc009xnz.2	+	c.1160C>G	c.(1159-1161)TCT>TGT	p.S387C	MAPK8_uc001jgl.2_3'UTR|MAPK8_uc001jgm.2_Missense_Mutation_p.S387C|MAPK8_uc001jgo.2_3'UTR|MAPK8_uc009xoa.2_3'UTR|MAPK8_uc001jgn.2_Missense_Mutation_p.S387C|MAPK8_uc010qgk.1_3'UTR|MAPK8_uc001jgp.2_Missense_Mutation_p.S387C|MAPK8_uc001jgq.2_3'UTR	NM_139047	NP_620635	P45983	MK08_HUMAN	mitogen-activated protein kinase 8 isoform JNK1	387					activation of pro-apoptotic gene products|cellular response to mechanical stimulus|induction of apoptosis by intracellular signals|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of apoptosis|negative regulation of protein binding|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of sequence-specific DNA binding transcription factor activity|response to UV|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|protein binding|protein binding			central_nervous_system(3)|ovary(1)|lung(1)|kidney(1)	6		Ovarian(717;0.0221)|Lung SC(717;0.113)|all_neural(218;0.116)		Epithelial(53;3.46e-65)|Lung(62;0.125)						140				0.20155	74.37315	85.051689	26	103	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	49642948	49642948	9666	10	C	G	G	G	416	32	MAPK8	3	3
HHEX	3087	broad.mit.edu	37	10	94452138	94452138	+	Silent	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:94452138C>G	uc001kid.2	+	c.375C>G	c.(373-375)CTC>CTG	p.L125L		NM_002729	NP_002720	Q03014	HHEX_HUMAN	hematopoietically expressed homeobox	125	Pro-rich.				anterior/posterior pattern formation|B cell differentiation|cell cycle|DNA conformation change|negative regulation of angiogenesis|negative regulation of gene-specific transcription from RNA polymerase II promoter|negative regulation of transcription by competitive promoter binding|negative regulation of transcription by transcription factor localization|negative regulation of vascular endothelial growth factor receptor signaling pathway|poly(A)+ mRNA export from nucleus|positive regulation of gene-specific transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|Wnt receptor signaling pathway	cytoplasm|nucleus|protein-DNA complex	DNA bending activity|eukaryotic initiation factor 4E binding|promoter binding|protein homodimerization activity|repressing transcription factor binding|TBP-class protein binding			ovary(1)	1														0.428571	11.324129	11.355255	3	4	KEEP	---	---	---	---	capture		Silent	SNP	94452138	94452138	7375	10	C	G	G	G	405	32	HHEX	3	3
HHEX	3087	broad.mit.edu	37	10	94452163	94452163	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr10:94452163C>G	uc001kid.2	+	c.400C>G	c.(400-402)CTG>GTG	p.L134V		NM_002729	NP_002720	Q03014	HHEX_HUMAN	hematopoietically expressed homeobox	134					anterior/posterior pattern formation|B cell differentiation|cell cycle|DNA conformation change|negative regulation of angiogenesis|negative regulation of gene-specific transcription from RNA polymerase II promoter|negative regulation of transcription by competitive promoter binding|negative regulation of transcription by transcription factor localization|negative regulation of vascular endothelial growth factor receptor signaling pathway|poly(A)+ mRNA export from nucleus|positive regulation of gene-specific transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|Wnt receptor signaling pathway	cytoplasm|nucleus|protein-DNA complex	DNA bending activity|eukaryotic initiation factor 4E binding|promoter binding|protein homodimerization activity|repressing transcription factor binding|TBP-class protein binding			ovary(1)	1														0.5	7.350074	7.350074	2	2	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	94452163	94452163	7375	10	C	G	G	G	415	32	HHEX	3	3
EXPH5	23086	broad.mit.edu	37	11	108380461	108380461	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:108380461C>T	uc001pkk.2	-	c.5773G>A	c.(5773-5775)GAT>AAT	p.D1925N	EXPH5_uc010rvy.1_Missense_Mutation_p.D1737N|EXPH5_uc010rvz.1_Missense_Mutation_p.D1769N|EXPH5_uc010rwa.1_Missense_Mutation_p.D1849N	NM_015065	NP_055880	Q149M6	Q149M6_HUMAN	exophilin 5 isoform a	1925					intracellular protein transport		Rab GTPase binding			ovary(2)	2		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)										0.205128	18.275172	21.4241	8	31	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	108380461	108380461	5516	11	C	T	T	T	377	29	EXPH5	2	2
DRD2	1813	broad.mit.edu	37	11	113286252	113286252	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:113286252G>T	uc001pnz.2	-	c.614C>A	c.(613-615)ACC>AAC	p.T205N	DRD2_uc010rwv.1_Missense_Mutation_p.T204N|DRD2_uc001poa.3_Missense_Mutation_p.T205N|DRD2_uc001pob.3_Missense_Mutation_p.T205N|DRD2_uc009yyr.1_Missense_Mutation_p.T205N	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	205	Helical; Name=5; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|diuresis|dopamine metabolic process|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|natriuresis|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane|integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)	1		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)					215				0.326733	102.439757	105.129574	33	68	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	113286252	113286252	4941	11	G	T	T	T	572	44	DRD2	2	2
LDHC	3948	broad.mit.edu	37	11	18456297	18456297	+	Missense_Mutation	SNP	G	C	C	rs77046631	byFrequency;by1000genomes	TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:18456297G>C	uc001mon.3	+	c.429G>C	c.(427-429)TTG>TTC	p.L143F	LDHC_uc001mom.3_Missense_Mutation_p.L143F|LDHC_uc009yhp.2_Missense_Mutation_p.L143F|LDHC_uc001moo.3_Missense_Mutation_p.L27F|LDHC_uc009yhq.2_Non-coding_Transcript|LDHC_uc009yhr.2_Missense_Mutation_p.L27F	NM_017448	NP_059144	P07864	LDHC_HUMAN	L-lactate dehydrogenase C	143					glycolysis|oxidation-reduction process	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)									0.129496	36.347919	54.92336	18	121	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	18456297	18456297	9026	11	G	C	C	C	581	45	LDHC	3	3
MRGPRX2	117194	broad.mit.edu	37	11	19077532	19077532	+	Missense_Mutation	SNP	G	A	A	rs60756581	by1000genomes	TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:19077532G>A	uc001mph.2	-	c.418C>T	c.(418-420)CGC>TGC	p.R140C		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	140	Cytoplasmic (Potential).				sensory perception of pain|sleep	integral to membrane|plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						GBM(198;1966 2199 4849 37227 49954)								0.215385	72.431352	82.148061	28	102	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	19077532	19077532	10160	11	G	A	A	A	507	39	MRGPRX2	1	1
LUZP2	338645	broad.mit.edu	37	11	25004819	25004819	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:25004819G>T	uc001mqs.2	+	c.745G>T	c.(745-747)GAT>TAT	p.D249Y	LUZP2_uc009yif.2_Missense_Mutation_p.D163Y|LUZP2_uc009yig.2_Missense_Mutation_p.D207Y	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	249						extracellular region				ovary(1)	1														0.232673	116.610322	129.836375	47	155	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	25004819	25004819	9463	11	G	T	T	T	429	33	LUZP2	2	2
LRRC4C	57689	broad.mit.edu	37	11	40136580	40136580	+	Silent	SNP	T	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:40136580T>A	uc001mxa.1	-	c.1263A>T	c.(1261-1263)ACA>ACT	p.T421T	LRRC4C_uc001mxc.1_Silent_p.T417T|LRRC4C_uc001mxd.1_Silent_p.T417T|LRRC4C_uc001mxb.1_Silent_p.T417T	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	421	Ig-like C2-type.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5		all_lung(304;0.0575)|Lung NSC(402;0.138)												0.389662	646.692699	652.056032	196	307	KEEP	---	---	---	---	capture		Silent	SNP	40136580	40136580	9383	11	T	A	A	A	704	55	LRRC4C	3	3
OR51Q1	390061	broad.mit.edu	37	11	5444131	5444131	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:5444131C>A	uc010qzd.1	+	c.701C>A	c.(700-702)GCT>GAT	p.A234D	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)										0.361809	218.543378	221.888987	72	127	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	5444131	5444131	11514	11	C	A	A	A	364	28	OR51Q1	2	2
OR4C11	219429	broad.mit.edu	37	11	55371624	55371624	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:55371624C>A	uc010rii.1	-	c.226G>T	c.(226-228)GCC>TCC	p.A76S		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1														0.637681	149.416746	150.566877	44	25	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	55371624	55371624	11451	11	C	A	A	A	364	28	OR4C11	2	2
TNKS1BP1	85456	broad.mit.edu	37	11	57080108	57080108	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:57080108A>G	uc001njr.2	-	c.2054T>C	c.(2053-2055)CTG>CCG	p.L685P	TNKS1BP1_uc001njs.2_Missense_Mutation_p.L685P|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.L136P	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	685	Pro-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)												0.6	10.625653	10.669307	3	2	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	57080108	57080108	16861	11	A	G	G	G	91	7	TNKS1BP1	4	4
GPR152	390212	broad.mit.edu	37	11	67219321	67219321	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:67219321G>T	uc001olm.2	-	c.875C>A	c.(874-876)CCC>CAC	p.P292H	CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	292	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			Pancreas(102;800 1581 2723 7382 33622)								0.285714	9.492349	10.07056	4	10	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	67219321	67219321	6933	11	G	T	T	T	559	43	GPR152	2	2
LRP5	4041	broad.mit.edu	37	11	68115636	68115636	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:68115636A>G	uc001ont.2	+	c.413A>G	c.(412-414)AAT>AGT	p.N138S	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	138	Beta-propeller 1.|LDL-receptor class B 2.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of gene-specific transcription from RNA polymerase II promoter|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(1)|pancreas(1)	2														0.358974	94.680864	96.045862	28	50	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	68115636	68115636	9333	11	A	G	G	G	52	4	LRP5	4	4
C11orf30	56946	broad.mit.edu	37	11	76227233	76227233	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:76227233C>T	uc010rsb.1	+	c.1606C>T	c.(1606-1608)CGG>TGG	p.R536W	C11orf30_uc001oxl.2_Missense_Mutation_p.R521W|C11orf30_uc001oxm.2_Missense_Mutation_p.R437W|C11orf30_uc010rsc.1_Missense_Mutation_p.R536W|C11orf30_uc001oxn.2_Missense_Mutation_p.R522W|C11orf30_uc010rsd.1_Missense_Mutation_p.R535W	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	521	Thr-rich.				chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6														0.272109	115.437088	122.317851	40	107	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	76227233	76227233	1674	11	C	T	T	T	399	31	C11orf30	1	1
CEP57	9702	broad.mit.edu	37	11	95546154	95546154	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr11:95546154G>C	uc001pfp.1	+	c.261G>C	c.(259-261)AGG>AGC	p.R87S	CEP57_uc001pfo.1_Missense_Mutation_p.R87S|CEP57_uc010ruh.1_Missense_Mutation_p.R78S|CEP57_uc010rui.1_Missense_Mutation_p.R87S|CEP57_uc009ywn.1_5'UTR|CEP57_uc001pfq.1_Missense_Mutation_p.R87S|CEP57_uc001pfr.1_5'UTR	NM_014679	NP_055494	Q86XR8	CEP57_HUMAN	translokin	87	Potential.|centrosome localization domain (CLD) (By similarity).				fibroblast growth factor receptor signaling pathway|G2/M transition of mitotic cell cycle|protein import into nucleus, translocation|spermatid development	centrosome|cytosol|Golgi apparatus|microtubule|nucleus	fibroblast growth factor binding|protein homodimerization activity			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)												0.135417	27.605253	39.970605	13	83	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	95546154	95546154	3389	11	G	C	C	C	529	41	CEP57	3	3
RASAL1	8437	broad.mit.edu	37	12	113559391	113559391	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:113559391C>G	uc001tun.1	-	c.351G>C	c.(349-351)CAG>CAC	p.Q117H	RASAL1_uc010syp.1_Missense_Mutation_p.Q117H|RASAL1_uc001tul.2_Missense_Mutation_p.Q117H|RASAL1_uc001tum.1_Missense_Mutation_p.Q117H|RASAL1_uc010syq.1_Missense_Mutation_p.Q117H|RASAL1_uc001tuo.3_Missense_Mutation_p.Q117H|RASAL1_uc010syr.1_Missense_Mutation_p.Q117H	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	117					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(1)	3														0.521739	120.385567	120.413102	36	33	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	113559391	113559391	13524	12	C	G	G	G	311	24	RASAL1	3	3
FOXM1	2305	broad.mit.edu	37	12	2977850	2977850	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:2977850A>T	uc001qle.2	-	c.725T>A	c.(724-726)ATG>AAG	p.M242K	FOXM1_uc001qlf.2_Missense_Mutation_p.M242K|FOXM1_uc001qlg.2_Missense_Mutation_p.M242K|FOXM1_uc009zea.2_Missense_Mutation_p.M241K|FOXM1_uc009zeb.2_Missense_Mutation_p.M241K	NM_202002	NP_973731	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 1	242	Fork-head.				cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of gene-specific transcription from RNA polymerase II promoter|negative regulation of stress-activated MAPK cascade|pattern specification process|positive regulation of cell proliferation|positive regulation of gene-specific transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|RNA polymerase II transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)											0.217391	66.120908	74.58261	25	90	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	2977850	2977850	6264	12	A	T	T	T	104	8	FOXM1	3	3
PARP11	57097	broad.mit.edu	37	12	3938098	3938098	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:3938098G>A	uc001qml.2	-	c.246C>T	c.(244-246)TTC>TTT	p.F82F	PARP11_uc001qmk.1_Silent_p.F75F|PARP11_uc009zef.2_Non-coding_Transcript|PARP11_uc001qmm.2_Intron|PARP11_uc001qmn.2_Intron	NM_020367	NP_065100	Q9NR21	PAR11_HUMAN	poly (ADP-ribose) polymerase family, member 11	75	WWE.						NAD+ ADP-ribosyltransferase activity			ovary(1)|central_nervous_system(1)	2			all cancers(3;1.58e-07)|OV - Ovarian serous cystadenocarcinoma(31;0.00287)|GBM - Glioblastoma multiforme(3;0.0141)|COAD - Colon adenocarcinoma(12;0.0264)											0.185185	11.357601	13.867412	5	22	KEEP	---	---	---	---	capture		Silent	SNP	3938098	3938098	11873	12	G	A	A	A	581	45	PARP11	2	2
ABCD2	225	broad.mit.edu	37	12	40013068	40013068	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:40013068C>G	uc001rmb.2	-	c.350G>C	c.(349-351)AGA>ACA	p.R117T		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	117	ABC transmembrane type-1.|Interaction with PEX19.|Helical; (Potential).				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4														0.483444	273.073424	273.10935	73	78	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	40013068	40013068	62	12	C	G	G	G	416	32	ABCD2	3	3
BAZ2A	11176	broad.mit.edu	37	12	56999683	56999683	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:56999683C>T	uc001slq.1	-	c.2430G>A	c.(2428-2430)CGG>CGA	p.R810R	BAZ2A_uc001slp.1_Silent_p.R808R|BAZ2A_uc009zov.1_5'Flank|BAZ2A_uc009zow.1_Silent_p.R778R	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	810					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|transcription regulator activity|zinc ion binding				0														0.5	26.299652	26.299652	8	8	KEEP	---	---	---	---	capture		Silent	SNP	56999683	56999683	1352	12	C	T	T	T	327	26	BAZ2A	2	2
SLC6A15	55117	broad.mit.edu	37	12	85266387	85266387	+	Silent	SNP	T	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr12:85266387T>A	uc001szv.2	-	c.1296A>T	c.(1294-1296)CTA>CTT	p.L432L	SLC6A15_uc010sul.1_Silent_p.L325L|SLC6A15_uc001szw.1_Silent_p.L140L	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	432	Extracellular (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3														0.146341	9.821122	14.751729	6	35	KEEP	---	---	---	---	capture		Silent	SNP	85266387	85266387	15175	12	T	A	A	A	782	61	SLC6A15	3	3
ZMYM2	7750	broad.mit.edu	37	13	20608525	20608525	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:20608525G>C	uc001umr.2	+	c.2100G>C	c.(2098-2100)AAG>AAC	p.K700N	ZMYM2_uc001ums.2_Missense_Mutation_p.K700N|ZMYM2_uc001umt.2_Missense_Mutation_p.K700N|ZMYM2_uc010tco.1_Non-coding_Transcript|ZMYM2_uc001umv.2_Missense_Mutation_p.K80N|ZMYM2_uc001umw.2_Missense_Mutation_p.K153N	NM_003453	NP_003444	Q9UBW7	ZMYM2_HUMAN	zinc finger protein 198	700					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	ubiquitin conjugating enzyme binding|zinc ion binding			ovary(2)	2		all_cancers(29;8.65e-21)|all_epithelial(30;1.04e-18)|all_lung(29;6.75e-18)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;0.000148)|Epithelial(112;0.000249)|OV - Ovarian serous cystadenocarcinoma(117;0.00816)|Lung(94;0.0173)|LUSC - Lung squamous cell carcinoma(192;0.0856)						348				0.227979	137.596345	150.698657	44	149	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	20608525	20608525	18291	13	G	C	C	C	425	33	ZMYM2	3	3
LATS2	26524	broad.mit.edu	37	13	21557918	21557918	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:21557918G>C	uc009zzs.2	-	c.1927C>G	c.(1927-1929)CAG>GAG	p.Q643E	LATS2_uc001unr.3_Missense_Mutation_p.Q643E	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	643					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|protein phosphorylation	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|pancreas(1)	9		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)						174				0.190476	11.287082	13.167929	4	17	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	21557918	21557918	8970	13	G	C	C	C	598	46	LATS2	3	3
FGF9	2254	broad.mit.edu	37	13	22255205	22255205	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:22255205C>A	uc001uog.2	+	c.302C>A	c.(301-303)GCA>GAA	p.A101E		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	101					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		Melanoma(195;1939 2127 12623 13963 52730)								0.5	67.199879	67.199879	20	20	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	22255205	22255205	6096	13	C	A	A	A	325	25	FGF9	2	2
MYCBP2	23077	broad.mit.edu	37	13	77847609	77847609	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:77847609G>C	uc001vkf.2	-	c.829C>G	c.(829-831)CAG>GAG	p.Q277E	MYCBP2_uc010aev.2_5'UTR	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	277					regulation of mitotic metaphase/anaphase transition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	anaphase-promoting complex	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|lung(2)|pancreas(1)	11		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)										0.137255	28.975057	41.965474	14	88	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	77847609	77847609	10413	13	G	C	C	C	585	45	MYCBP2	3	3
SLITRK5	26050	broad.mit.edu	37	13	88328774	88328774	+	Silent	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:88328774G>T	uc001vln.2	+	c.1131G>T	c.(1129-1131)GCG>GCT	p.A377A	SLITRK5_uc010tic.1_Silent_p.A136A	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	377	Extracellular (Potential).|LRRNT.					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)													0.4	20.448926	20.579515	6	9	KEEP	---	---	---	---	capture		Silent	SNP	88328774	88328774	15244	13	G	T	T	T	509	40	SLITRK5	1	1
GPC5	2262	broad.mit.edu	37	13	93518680	93518680	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr13:93518680C>T	uc010tif.1	+	c.1707C>T	c.(1705-1707)CCC>CCT	p.P569P		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	569						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)	2	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)												0.298851	246.252331	255.687179	78	183	KEEP	---	---	---	---	capture		Silent	SNP	93518680	93518680	6875	13	C	T	T	T	288	23	GPC5	1	1
TEP1	7011	broad.mit.edu	37	14	20846397	20846397	+	Splice_Site_SNP	SNP	T	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr14:20846397T>A	uc001vxe.2	-	c.5509_splice	c.e39-1	p.D1837_splice	TEP1_uc010ahk.2_Splice_Site_SNP_p.D1180_splice|TEP1_uc010tlf.1_Splice_Site_SNP|TEP1_uc010tlg.1_Splice_Site_SNP_p.D1729_splice|TEP1_uc010tlh.1_Splice_Site_SNP_p.D175_splice	NM_007110	NP_009041			telomerase-associated protein 1						telomere maintenance via recombination|telomere maintenance via telomerase	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)										0.357143	15.772416	16.02351	5	9	KEEP	---	---	---	---	capture		Splice_Site_SNP	SNP	20846397	20846397	16286	14	T	A	A	A	689	53	TEP1	5	3
C14orf159	80017	broad.mit.edu	37	14	91691111	91691111	+	Silent	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr14:91691111G>T	uc001xyw.2	+	c.1800G>T	c.(1798-1800)CTG>CTT	p.L600L	C14orf159_uc001xzb.2_Silent_p.L595L|C14orf159_uc001xyx.2_Silent_p.L543L|C14orf159_uc001xzc.2_Silent_p.L595L|C14orf159_uc001xza.2_Silent_p.L600L|C14orf159_uc001xyv.2_Silent_p.L560L|C14orf159_uc001xyz.2_Silent_p.L471L|C14orf159_uc001xze.2_Silent_p.L595L	NM_001102368	NP_001095838	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform b	595						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)										0.75	79.440205	81.309288	24	8	KEEP	---	---	---	---	capture		Silent	SNP	91691111	91691111	1803	14	G	T	T	T	587	46	C14orf159	2	2
OCA2	4948	broad.mit.edu	37	15	28202874	28202874	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:28202874C>A	uc001zbh.3	-	c.1644G>T	c.(1642-1644)AAG>AAT	p.K548N	OCA2_uc010ayv.2_Missense_Mutation_p.K524N	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	548	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)										0.294118	27.93567	29.225948	10	24	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	28202874	28202874	11220	15	C	A	A	A	363	28	OCA2	2	2
OCA2	4948	broad.mit.edu	37	15	28211923	28211923	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:28211923A>T	uc001zbh.3	-	c.1549T>A	c.(1549-1551)TGC>AGC	p.C517S	OCA2_uc010ayv.2_Missense_Mutation_p.C493S	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	517	Helical; (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)										0.333333	47.656939	48.912101	17	34	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	28211923	28211923	11220	15	A	T	T	T	65	5	OCA2	3	3
CAPN3	825	broad.mit.edu	37	15	42702827	42702827	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:42702827C>G	uc001zpn.1	+	c.2226C>G	c.(2224-2226)ATC>ATG	p.I742M	CAPN3_uc001zpk.1_Missense_Mutation_p.I509M|CAPN3_uc001zpl.1_Missense_Mutation_p.I649M|CAPN3_uc010udf.1_Missense_Mutation_p.I655M|CAPN3_uc010udg.1_Missense_Mutation_p.I607M|CAPN3_uc001zpo.1_Missense_Mutation_p.I736M|CAPN3_uc001zpp.1_Missense_Mutation_p.I650M|CAPN3_uc001zpq.1_Missense_Mutation_p.I230M|CAPN3_uc010bcv.1_Missense_Mutation_p.I77M|CAPN3_uc001zpr.1_Missense_Mutation_p.I77M|CAPN3_uc001zps.1_Missense_Mutation_p.I77M|CAPN3_uc001zpt.1_Missense_Mutation_p.I77M	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	742	EF-hand 3.|2 (Probable).|Domain IV.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)										0.333333	106.29453	108.582122	31	62	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	42702827	42702827	2746	15	C	G	G	G	369	29	CAPN3	3	3
CEP152	22995	broad.mit.edu	37	15	49048414	49048414	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:49048414G>A	uc001zwz.2	-	c.3031C>T	c.(3031-3033)CAG>TAG	p.Q1011*	CEP152_uc001zwy.2_Nonsense_Mutation_p.Q1011*|CEP152_uc001zxa.1_Nonsense_Mutation_p.Q918*	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	1011					G2/M transition of mitotic cell cycle	cytosol|microtubule organizing center				lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)										0.364286	154.894562	157.15986	51	89	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	49048414	49048414	3381	15	G	A	A	A	585	45	CEP152	5	2
UNC13C	440279	broad.mit.edu	37	15	54305729	54305729	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:54305729G>A	uc002ack.2	+	c.629G>A	c.(628-630)AGA>AAA	p.R210K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	210					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)						2691				0.138889	47.446207	70.13367	25	155	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	54305729	54305729	17544	15	G	A	A	A	429	33	UNC13C	2	2
VPS13C	54832	broad.mit.edu	37	15	62254661	62254661	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:62254661T>A	uc002agz.2	-	c.3512A>T	c.(3511-3513)TAT>TTT	p.Y1171F	VPS13C_uc002aha.2_Missense_Mutation_p.Y1128F|VPS13C_uc002ahb.1_Missense_Mutation_p.Y1171F|VPS13C_uc002ahc.1_Missense_Mutation_p.Y1128F	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1171					protein localization					ovary(2)	2														0.285714	301.207827	315.914017	102	255	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	62254661	62254661	17758	15	T	A	A	A	637	49	VPS13C	3	3
HERC1	8925	broad.mit.edu	37	15	64045267	64045267	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:64045267C>A	uc002amp.2	-	c.1792G>T	c.(1792-1794)GAT>TAT	p.D598Y	HERC1_uc010uil.1_Intron|HERC1_uc010bgt.1_Missense_Mutation_p.D598Y	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	598	RCC1 5.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(5)|central_nervous_system(2)|lung(1)|breast(1)	9														0.175	14.297598	18.285722	7	33	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	64045267	64045267	7340	15	C	A	A	A	377	29	HERC1	2	2
TSPAN3	10099	broad.mit.edu	37	15	77348204	77348204	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:77348204A>T	uc002bcj.2	-	c.257T>A	c.(256-258)TTT>TAT	p.F86Y	TSPAN3_uc002bck.2_Intron|TSPAN3_uc010ump.1_Missense_Mutation_p.F22Y|TSPAN3_uc010bkx.2_Intron	NM_005724	NP_005715	O60637	TSN3_HUMAN	transmembrane 4 superfamily member 8 isoform 1	86	Helical; (Potential).					integral to membrane					0				all cancers(203;1.14e-19)										0.340909	44.011676	44.995869	15	29	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	77348204	77348204	17196	15	A	T	T	T	13	1	TSPAN3	3	3
DOK4	55715	broad.mit.edu	37	16	57509470	57509470	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr16:57509470C>T	uc002elu.1	-	c.237G>A	c.(235-237)GCG>GCA	p.A79A	DOK4_uc010cdb.2_Silent_p.A79A|DOK4_uc002elv.3_Silent_p.A79A	NM_018110	NP_060580	Q8TEW6	DOK4_HUMAN	docking protein 4	79	PH.						insulin receptor binding				0														0.4	20.453296	20.582436	6	9	KEEP	---	---	---	---	capture		Silent	SNP	57509470	57509470	4883	16	C	T	T	T	288	23	DOK4	1	1
TEPP	374739	broad.mit.edu	37	16	58011792	58011792	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr16:58011792G>A	uc002emv.3	+	c.237G>A	c.(235-237)CTG>CTA	p.L79L	TEPP_uc002emw.3_Silent_p.L79L	NM_199046	NP_950247	Q6URK8	TEPP_HUMAN	testis/prostate/placenta-expressed protein	79						extracellular region				kidney(1)|central_nervous_system(1)	2														0.327869	53.375027	54.97989	20	41	KEEP	---	---	---	---	capture		Silent	SNP	58011792	58011792	16287	16	G	A	A	A	587	46	TEPP	2	2
KCTD19	146212	broad.mit.edu	37	16	67338379	67338379	+	Silent	SNP	T	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr16:67338379T>C	uc002esu.2	-	c.396A>G	c.(394-396)ACA>ACG	p.T132T	KCTD19_uc002est.2_5'UTR|KCTD19_uc010vjj.1_5'UTR	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	132						voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)										0.384106	189.415292	191.193277	58	93	KEEP	---	---	---	---	capture		Silent	SNP	67338379	67338379	8412	16	T	C	C	C	652	51	KCTD19	4	4
CENPN	55839	broad.mit.edu	37	16	81050942	81050942	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr16:81050942C>G	uc002ffy.3	+	c.229C>G	c.(229-231)CAT>GAT	p.H77D	CENPN_uc002ffw.3_Missense_Mutation_p.H77D|CENPN_uc002ffx.2_Missense_Mutation_p.H77D|CENPN_uc010vnl.1_Missense_Mutation_p.H77D|CENPN_uc010vnm.1_Intron	NM_001100625	NP_001094095	Q96H22	CENPN_HUMAN	centromere protein N isoform 1	77					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm					0														0.338983	70.381546	71.734211	20	39	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	81050942	81050942	3371	16	C	G	G	G	377	29	CENPN	3	3
PHF12	57649	broad.mit.edu	37	17	27235901	27235901	+	Splice_Site_SNP	SNP	T	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:27235901T>C	uc002hdg.1	-	c.2360_splice	c.e12-1	p.V787_splice	PHF12_uc010wbb.1_Splice_Site_SNP_p.V769_splice	NM_001033561	NP_001028733			PHD finger protein 12 isoform 1						negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|transcription repressor activity|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)											0.25	6.04647	6.500686	2	6	KEEP	---	---	---	---	capture		Splice_Site_SNP	SNP	27235901	27235901	12246	17	T	C	C	C	689	53	PHF12	5	4
INTS2	57508	broad.mit.edu	37	17	59988888	59988888	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:59988888C>G	uc002izn.2	-	c.971G>C	c.(970-972)GGA>GCA	p.G324A	INTS2_uc002izm.2_Missense_Mutation_p.G316A	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	324					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3														0.327869	69.279781	70.882144	20	41	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	59988888	59988888	8079	17	C	G	G	G	390	30	INTS2	3	3
DDX42	11325	broad.mit.edu	37	17	61869884	61869884	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:61869884G>A	uc002jbu.2	+	c.334G>A	c.(334-336)GAT>AAT	p.D112N	DDX42_uc002jbv.2_Missense_Mutation_p.D112N|DDX42_uc002jbw.1_5'UTR	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	112					protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|large_intestine(1)	3														0.18797	60.89396	73.016586	25	108	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	61869884	61869884	4533	17	G	A	A	A	481	37	DDX42	1	1
ABCA8	10351	broad.mit.edu	37	17	66933233	66933233	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:66933233C>G	uc002jhq.2	-	c.325G>C	c.(325-327)GAT>CAT	p.D109H	ABCA8_uc002jhp.2_Missense_Mutation_p.D109H|ABCA8_uc010wqq.1_Missense_Mutation_p.D109H|ABCA8_uc010wqr.1_Missense_Mutation_p.D48H|ABCA8_uc002jhr.2_Missense_Mutation_p.D109H|ABCA8_uc002jhs.2_Missense_Mutation_p.D109H|ABCA8_uc002jht.2_Missense_Mutation_p.D109H	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	109						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)	2	Breast(10;4.56e-13)													0.363636	97.178417	98.438528	28	49	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	66933233	66933233	39	17	C	G	G	G	416	32	ABCA8	3	3
DNAI2	64446	broad.mit.edu	37	17	72295931	72295931	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:72295931T>G	uc002jkf.2	+	c.799T>G	c.(799-801)TAT>GAT	p.Y267D	DNAI2_uc002jkg.2_Non-coding_Transcript|DNAI2_uc010dfp.2_Non-coding_Transcript	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	267	WD 3.				cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3														0.296296	26.99113	27.992049	8	19	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	72295931	72295931	4793	17	T	G	G	G	741	57	DNAI2	4	4
SAP30BP	29115	broad.mit.edu	37	17	73689542	73689542	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:73689542G>C	uc002jpe.2	+	c.287G>C	c.(286-288)CGA>CCA	p.R96P	SAP30BP_uc002jpc.1_Non-coding_Transcript|SAP30BP_uc010wsf.1_Non-coding_Transcript|SAP30BP_uc010wsg.1_Non-coding_Transcript|SAP30BP_uc002jpf.2_Missense_Mutation_p.R80P	NM_013260	NP_037392	Q9UHR5	S30BP_HUMAN	transcriptional regulator protein	96					apoptosis|induction of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1	all_cancers(13;6.42e-08)		all cancers(21;4.25e-07)|Epithelial(20;9.57e-07)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)											0.235294	24.903317	27.067524	8	26	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	73689542	73689542	14315	17	G	C	C	C	481	37	SAP30BP	3	3
ST6GALNAC1	55808	broad.mit.edu	37	17	74622174	74622174	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:74622174G>A	uc002jsh.2	-	c.1419C>T	c.(1417-1419)CAC>CAT	p.H473H	ST6GALNAC1_uc002jsi.2_Silent_p.H341H|ST6GALNAC1_uc002jsj.2_Non-coding_Transcript	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	473	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0														0.260274	51.188926	54.988697	19	54	KEEP	---	---	---	---	capture		Silent	SNP	74622174	74622174	15741	17	G	A	A	A	620	48	ST6GALNAC1	2	2
TP53	7157	broad.mit.edu	37	17	7578433	7578433	+	Nonsense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr17:7578433G>C	uc002gim.2	-	c.497C>G	c.(496-498)TCA>TGA	p.S166*	TP53_uc002gig.1_Nonsense_Mutation_p.S166*|TP53_uc002gih.2_Nonsense_Mutation_p.S166*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.S34*|TP53_uc010cng.1_Nonsense_Mutation_p.S34*|TP53_uc002gii.1_Nonsense_Mutation_p.S34*|TP53_uc010cnh.1_Nonsense_Mutation_p.S166*|TP53_uc010cni.1_Nonsense_Mutation_p.S166*|TP53_uc002gij.2_Nonsense_Mutation_p.S166*|TP53_uc010cnj.1_Non-coding_Transcript|TP53_uc002gin.2_Nonsense_Mutation_p.S73*|TP53_uc002gio.2_Nonsense_Mutation_p.S34*|TP53_uc010vug.1_Nonsense_Mutation_p.S127*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	166	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		S -> T (in sporadic cancers; somatic mutation).|S -> L (in sporadic cancers; somatic mutation).|S -> A (in sporadic cancers; somatic mutation).|S -> P (in sporadic cancers; somatic mutation).|S -> G (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of gene-specific transcription from RNA polymerase II promoter|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of gene-specific transcription from RNA polymerase II promoter|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	chromatin|cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|promoter binding|promoter binding|protease binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|sequence-specific DNA binding transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|ubiquitin protein ligase binding|zinc ion binding	p.S166*(19)|p.0?(6)|p.S166L(4)|p.Q167fs*14(4)|p.K164fs*3(2)|p.V157_C176del20(1)|p.Y163fs*1(1)|p.P151_V173del23(1)|p.Q165_S166insYKQ(1)|p.Q165_M169delQSQHM(1)|p.Y163fs*14(1)|p.S149fs*72(1)|p.A159_Q167delAMAIYKQSQ(1)|p.S166G(1)		large_intestine(4614)|breast(2344)|upper_aerodigestive_tract(2150)|lung(1958)|ovary(1559)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1212)|stomach(1127)|urinary_tract(1113)|central_nervous_system(1072)|liver(805)|skin(693)|pancreas(370)|biliary_tract(247)|soft_tissue(209)|prostate(192)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(41)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	21904		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		Pancreas(47;798 1329 9957 10801)		111	p.165_166insYCL(NCIH727-Tumor)	690	TCGA GBM(1;<1E-8)|TSP Lung(2;<1E-8)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			0.481013	138.349208	138.373883	38	41	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	7578433	7578433	16923	17	G	C	C	C	585	45	TP53	5	3
SLC27A1	376497	broad.mit.edu	37	19	17612097	17612097	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:17612097C>A	uc002ngu.1	+	c.1652C>A	c.(1651-1653)GCA>GAA	p.A551E	SLC27A1_uc010xpp.1_Missense_Mutation_p.A372E|SLC27A1_uc002ngv.1_Missense_Mutation_p.A153E	NM_198580	NP_940982	Q6PCB7	S27A1_HUMAN	solute carrier family 27, member 1	551	Cytoplasmic (Potential).				cardiolipin biosynthetic process|fatty acid metabolic process|long-chain fatty acid transport|negative regulation of phospholipid biosynthetic process|phosphatidic acid biosynthetic process|phosphatidylcholine biosynthetic process|phosphatidylethanolamine biosynthetic process|phosphatidylinositol biosynthetic process|phosphatidylserine biosynthetic process|transmembrane transport	endomembrane system|integral to membrane	fatty acid transporter activity|nucleotide binding				0														0.6	20.25167	20.339018	6	4	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	17612097	17612097	15022	19	C	A	A	A	325	25	SLC27A1	2	2
ZNF208	7757	broad.mit.edu	37	19	22154332	22154332	+	Silent	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:22154332G>T	uc002nqp.2	-	c.3120C>A	c.(3118-3120)CCC>CCA	p.P1040P	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)	5		all_lung(12;0.0961)|Lung NSC(12;0.103)												0.571429	54.302836	54.427359	16	12	KEEP	---	---	---	---	capture		Silent	SNP	22154332	22154332	18357	19	G	T	T	T	444	35	ZNF208	2	2
ZNF566	84924	broad.mit.edu	37	19	36967453	36967453	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:36967453G>A	uc010xtf.1	-	c.7C>T	c.(7-9)CAG>TAG	p.Q3*	ZNF566_uc002oea.3_Nonsense_Mutation_p.Q3*|ZNF566_uc010xte.1_Nonsense_Mutation_p.Q3*|ZNF566_uc002oeb.3_Nonsense_Mutation_p.Q3*|ZNF566_uc002oec.3_5'UTR|ZNF566_uc010xtg.1_5'UTR	NM_001145343	NP_001138815	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 2	3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)													0.142857	17.699407	26.305576	10	60	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	36967453	36967453	18592	19	G	A	A	A	585	45	ZNF566	5	2
SHKBP1	92799	broad.mit.edu	37	19	41086690	41086690	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:41086690G>T	uc002oob.2	+	c.692G>T	c.(691-693)AGC>ATC	p.S231I	SHKBP1_uc002ooc.2_Missense_Mutation_p.S231I|SHKBP1_uc002ood.2_Missense_Mutation_p.S231I|SHKBP1_uc010xvl.1_Missense_Mutation_p.S154I|SHKBP1_uc002ooe.2_Missense_Mutation_p.S68I|SHKBP1_uc002oof.2_Missense_Mutation_p.S68I|SHKBP1_uc010xvm.1_Missense_Mutation_p.S68I|SHKBP1_uc010xvn.1_Missense_Mutation_p.S109I	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	231						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)											0.351351	35.025329	35.763215	13	24	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	41086690	41086690	14779	19	G	T	T	T	442	34	SHKBP1	2	2
ZNF283	284349	broad.mit.edu	37	19	44351558	44351558	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:44351558G>C	uc002oxr.3	+	c.805G>C	c.(805-807)GGG>CGG	p.G269R	ZNF283_uc002oxp.3_Missense_Mutation_p.G130R	NM_181845	NP_862828	Q8N7M2	ZN283_HUMAN	zinc finger protein 283	269	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)												0.146341	22.840835	32.702222	12	70	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	44351558	44351558	18412	19	G	C	C	C	611	47	ZNF283	3	3
SLC6A16	28968	broad.mit.edu	37	19	49812634	49812634	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:49812634A>C	uc002pmz.2	-	c.911T>G	c.(910-912)ATC>AGC	p.I304S	SLC6A16_uc002pna.2_Missense_Mutation_p.I304S	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	304	Helical; Name=5; (Potential).					integral to plasma membrane|intracellular	neurotransmitter:sodium symporter activity			ovary(1)|kidney(1)	2		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)										0.192308	52.438264	61.633384	20	84	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	49812634	49812634	15176	19	A	C	C	C	156	12	SLC6A16	4	4
ZNF611	81856	broad.mit.edu	37	19	53208732	53208732	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:53208732C>G	uc002pzz.2	-	c.1576G>C	c.(1576-1578)GAG>CAG	p.E526Q	ZNF611_uc010eqc.2_Missense_Mutation_p.E456Q|ZNF611_uc010ydo.1_Missense_Mutation_p.E456Q|ZNF611_uc010ydr.1_Missense_Mutation_p.E457Q|ZNF611_uc010ydp.1_Missense_Mutation_p.E526Q|ZNF611_uc010ydq.1_Missense_Mutation_p.E526Q|ZNF611_uc002qaa.3_Missense_Mutation_p.E456Q	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	526	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)										0.343915	222.415551	226.483724	65	124	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	53208732	53208732	18632	19	C	G	G	G	377	29	ZNF611	3	3
ZNF160	90338	broad.mit.edu	37	19	53589517	53589517	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:53589517G>T	uc010eqk.2	-	c.13C>A	c.(13-15)CAG>AAG	p.Q5K	ZNF160_uc002qaq.3_Missense_Mutation_p.Q5K|ZNF160_uc002qar.3_Missense_Mutation_p.Q5K|ZNF160_uc002qas.3_Missense_Mutation_p.Q5K	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	5					hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)										0.337209	87.645499	89.662789	29	57	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	53589517	53589517	18330	19	G	T	T	T	585	45	ZNF160	2	2
VSTM1	284415	broad.mit.edu	37	19	54545619	54545619	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:54545619G>A	uc002qcw.3	-	c.399C>T	c.(397-399)ACC>ACT	p.T133T	VSTM1_uc010erb.2_Non-coding_Transcript|VSTM1_uc002qcx.3_Intron	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	133						integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)										0.240741	36.246562	39.559237	13	41	KEEP	---	---	---	---	capture		Silent	SNP	54545619	54545619	17796	19	G	A	A	A	600	47	VSTM1	2	2
S1PR1	1901	broad.mit.edu	37	1	101705580	101705580	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:101705580G>T	uc001dud.2	+	c.1040G>T	c.(1039-1041)GGC>GTC	p.G347V	S1PR1_uc009weg.2_Missense_Mutation_p.G347V	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	347	Cytoplasmic (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)	2														0.15942	20.681952	28.305667	11	58	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	101705580	101705580	14273	1	G	T	T	T	546	42	S1PR1	2	2
COL11A1	1301	broad.mit.edu	37	1	103364245	103364245	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:103364245G>A	uc001dum.2	-	c.4261C>T	c.(4261-4263)CTT>TTT	p.L1421F	COL11A1_uc001duk.2_Missense_Mutation_p.L605F|COL11A1_uc001dul.2_Missense_Mutation_p.L1409F|COL11A1_uc001dun.2_Missense_Mutation_p.L1370F|COL11A1_uc009weh.2_Missense_Mutation_p.L1293F	NM_080629	NP_542196	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform B	1409	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|central_nervous_system(1)|pancreas(1)	11		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)										0.25	25.356824	27.402407	9	27	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	103364245	103364245	3805	1	G	A	A	A	429	33	COL11A1	2	2
RBM15	64783	broad.mit.edu	37	1	110882847	110882847	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:110882847G>A	uc001dzl.1	+	c.820G>A	c.(820-822)GGG>AGG	p.G274R	RBM15_uc001dzm.1_Missense_Mutation_p.G274R	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	274					interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)						100				0.222222	9.990741	11.268175	4	14	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	110882847	110882847	13577	1	G	A	A	A	507	39	RBM15	1	1
MAN1A2	10905	broad.mit.edu	37	1	117944871	117944871	+	Silent	SNP	A	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:117944871A>C	uc001ehd.1	+	c.366A>C	c.(364-366)GCA>GCC	p.A122A	MAN1A2_uc009whg.1_Intron	NM_006699	NP_006690	O60476	MA1A2_HUMAN	mannosidase, alpha, class 1A, member 2	122	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity				0	Lung SC(450;0.225)	all_cancers(81;7.9e-06)|all_epithelial(167;7.39e-07)|all_lung(203;2.84e-06)|Lung NSC(69;1.99e-05)		Lung(183;0.0688)|Kidney(133;0.114)|LUSC - Lung squamous cell carcinoma(189;0.223)|KIRC - Kidney renal clear cell carcinoma(1967;0.237)|Colorectal(144;0.243)		Ovarian(33;199 881 8228 13687 31538)								0.214286	42.487024	47.762758	15	55	KEEP	---	---	---	---	capture		Silent	SNP	117944871	117944871	9594	1	A	C	C	C	54	5	MAN1A2	4	4
DCST1	149095	broad.mit.edu	37	1	155015885	155015885	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:155015885G>A	uc001fgn.1	+	c.1072G>A	c.(1072-1074)GAG>AAG	p.E358K	DCST1_uc010per.1_Missense_Mutation_p.E383K|DCST1_uc010pes.1_Missense_Mutation_p.E333K	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	358	Extracellular (Potential).					integral to membrane	zinc ion binding			ovary(1)	1	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)											0.236842	23.056435	25.461036	9	29	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	155015885	155015885	4473	1	G	A	A	A	481	37	DCST1	1	1
PIGM	93183	broad.mit.edu	37	1	160001137	160001137	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:160001137C>G	uc001fuv.1	-	c.393G>C	c.(391-393)TGG>TGC	p.W131C		NM_145167	NP_660150	Q9H3S5	PIGM_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	131	Cytoplasmic (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)											0.188889	45.029286	53.173669	17	73	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	160001137	160001137	12316	1	C	G	G	G	338	26	PIGM	3	3
FMO3	2328	broad.mit.edu	37	1	171083381	171083381	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:171083381A>C	uc001ghi.2	+	c.1062A>C	c.(1060-1062)AAA>AAC	p.K354N	FMO3_uc001ghh.2_Missense_Mutation_p.K354N|FMO3_uc010pmb.1_Missense_Mutation_p.K334N|FMO3_uc010pmc.1_Missense_Mutation_p.K291N	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	354					oxidation-reduction process|xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity				0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)													0.260163	87.978915	94.443582	32	91	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	171083381	171083381	6198	1	A	C	C	C	37	3	FMO3	4	4
NFASC	23114	broad.mit.edu	37	1	204948557	204948557	+	Silent	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:204948557C>A	uc001hbj.2	+	c.2046C>A	c.(2044-2046)CCC>CCA	p.P682P	NFASC_uc010pra.1_Silent_p.P678P|NFASC_uc001hbi.2_Silent_p.P678P|NFASC_uc010prb.1_Silent_p.P693P|NFASC_uc010prc.1_Silent_p.P249P|NFASC_uc001hbk.1_Silent_p.P488P|NFASC_uc001hbl.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	682	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)	4	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)											0.310345	53.827277	55.686356	18	40	KEEP	---	---	---	---	capture		Silent	SNP	204948557	204948557	10759	1	C	A	A	A	288	23	NFASC	1	1
EPRS	2058	broad.mit.edu	37	1	220156531	220156531	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:220156531C>T	uc001hly.1	-	c.3300G>A	c.(3298-3300)GAG>GAA	p.E1100E		NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	1100	Prolyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)									0.430233	129.266237	129.630501	37	49	KEEP	---	---	---	---	capture		Silent	SNP	220156531	220156531	5384	1	C	T	T	T	311	24	EPRS	2	2
EPRS	2058	broad.mit.edu	37	1	220170591	220170591	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:220170591C>A	uc001hly.1	-	c.2275G>T	c.(2275-2277)GTT>TTT	p.V759F	EPRS_uc010puf.1_Missense_Mutation_p.V510F|EPRS_uc001hlz.1_Missense_Mutation_p.V766F	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	759	WHEP-TRS 1.|Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)									0.368421	87.97177	89.131304	28	48	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	220170591	220170591	5384	1	C	A	A	A	221	17	EPRS	2	2
NID1	4811	broad.mit.edu	37	1	236205495	236205495	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:236205495C>A	uc001hxo.2	-	c.850G>T	c.(850-852)GAA>TAA	p.E284*	NID1_uc009xgd.2_Nonsense_Mutation_p.E284*	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	284					bioluminescence|cell-matrix adhesion|protein-chromophore linkage	basement membrane|membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)									0.186957	94.376871	115.498247	43	187	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	236205495	236205495	10815	1	C	A	A	A	377	29	NID1	5	2
RYR2	6262	broad.mit.edu	37	1	237995884	237995884	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:237995884G>T	uc001hyl.1	+	c.14841G>T	c.(14839-14841)AGG>AGT	p.R4947S	RYR2_uc010pyb.1_3'UTR	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4947					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)											0.242857	46.538298	50.758899	17	53	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	237995884	237995884	14249	1	G	T	T	T	568	44	RYR2	2	2
ID3	3399	broad.mit.edu	37	1	23885762	23885762	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:23885762C>T	uc001bhh.3	-	c.156G>A	c.(154-156)CGG>CGA	p.R52R	ID3_uc001bhg.1_Silent_p.R52R	NM_002167	NP_002158	Q02535	ID3_HUMAN	inhibitor of DNA binding 3	52	Helix-loop-helix motif.				negative regulation of sequence-specific DNA binding transcription factor activity	nucleus	transcription corepressor activity|transcription repressor activity			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00314)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;8.83e-25)|Colorectal(126;4.8e-08)|COAD - Colon adenocarcinoma(152;2.83e-06)|GBM - Glioblastoma multiforme(114;6.5e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0827)|LUSC - Lung squamous cell carcinoma(448;0.184)										0.333333	16.170101	16.53906	5	10	KEEP	---	---	---	---	capture		Silent	SNP	23885762	23885762	7791	1	C	T	T	T	275	22	ID3	2	2
TSSK3	81629	broad.mit.edu	37	1	32829545	32829545	+	Silent	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:32829545G>C	uc001bvf.2	+	c.495G>C	c.(493-495)CTG>CTC	p.L165L		NM_052841	NP_443073	Q96PN8	TSSK3_HUMAN	testis-specific serine kinase 3	165	Protein kinase.				cell differentiation|multicellular organismal development|protein phosphorylation|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.17)|Breast(348;0.212)								55				0.2	33.564104	38.586836	12	48	KEEP	---	---	---	---	capture		Silent	SNP	32829545	32829545	17223	1	G	C	C	C	574	45	TSSK3	3	3
C1orf175	374977	broad.mit.edu	37	1	55175634	55175634	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:55175634G>A	uc010ooe.1	+	c.3746G>A	c.(3745-3747)AGA>AAA	p.R1249K	C1orf175_uc001cxq.2_Intron|C1orf175_uc001cxs.2_Non-coding_Transcript|C1orf175_uc010ood.1_Missense_Mutation_p.R767K|C1orf175_uc010oof.1_Non-coding_Transcript|C1orf175_uc001cxr.1_Non-coding_Transcript|C1orf175_uc009vzq.1_Non-coding_Transcript|C1orf175_uc001cxt.1_Non-coding_Transcript|C1orf175_uc009vzr.1_Missense_Mutation_p.R450K	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1249						integral to membrane	binding				0														0.163934	22.208785	28.754088	10	51	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	55175634	55175634	2083	1	G	A	A	A	429	33	C1orf175	2	2
SFRS11	9295	broad.mit.edu	37	1	70687463	70687463	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:70687463G>C	uc001des.2	+	c.144G>C	c.(142-144)CAG>CAC	p.Q48H	SFRS11_uc009wbi.2_Missense_Mutation_p.Q48H|SFRS11_uc009wbj.1_Missense_Mutation_p.Q48H|SFRS11_uc010oqo.1_Missense_Mutation_p.Q48H|SFRS11_uc001det.2_Missense_Mutation_p.Q48H|SFRS11_uc001deu.2_Missense_Mutation_p.Q48H	NM_004768	NP_004759	Q05519	SRS11_HUMAN	splicing factor, arginine/serine-rich 11	48	RRM.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0														0.588235	113.160362	113.507279	30	21	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	70687463	70687463	14655	1	G	C	C	C	425	33	SFRS11	3	3
TNNI3K	51086	broad.mit.edu	37	1	74957833	74957833	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:74957833C>A	uc001dge.1	+	c.2537C>A	c.(2536-2538)TCT>TAT	p.S846Y	TNNI3K_uc001dgf.1_Missense_Mutation_p.S745Y	NM_001112808	NP_001106279	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform a	745	Poly-Ser.				protein phosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10										765				0.173302	147.165249	190.223245	74	353	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	74957833	74957833	16870	1	C	A	A	A	416	32	TNNI3K	2	2
LHX8	431707	broad.mit.edu	37	1	75608822	75608822	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:75608822T>G	uc001dgo.2	+	c.409T>G	c.(409-411)TCT>GCT	p.S137A	LHX8_uc001dgq.2_Missense_Mutation_p.S76A	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	137	LIM zinc-binding 2.				regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulator activity|zinc ion binding			ovary(3)	3														0.145833	11.890196	17.682526	7	41	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	75608822	75608822	9102	1	T	G	G	G	702	54	LHX8	4	4
CLCA4	22802	broad.mit.edu	37	1	87045236	87045236	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:87045236G>C	uc009wcs.2	+	c.2322G>C	c.(2320-2322)TGG>TGC	p.W774C	CLCA4_uc009wct.2_Missense_Mutation_p.W537C|CLCA4_uc009wcu.2_Missense_Mutation_p.W594C	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	774						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)										0.417197	476.46418	478.345399	131	183	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	87045236	87045236	3595	1	G	C	C	C	533	41	CLCA4	3	3
RPN2	6185	broad.mit.edu	37	20	35827457	35827457	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr20:35827457C>G	uc002xgp.2	+	c.308C>G	c.(307-309)TCT>TGT	p.S103C	RPN2_uc002xgo.3_Missense_Mutation_p.S103C|RPN2_uc010gfw.2_Intron|RPN2_uc002xgq.2_Missense_Mutation_p.S71C	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	103	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)												0.306122	359.85189	371.345657	105	238	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	35827457	35827457	14087	20	C	G	G	G	416	32	RPN2	3	3
RPN2	6185	broad.mit.edu	37	20	35827584	35827584	+	Silent	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr20:35827584C>G	uc002xgp.2	+	c.435C>G	c.(433-435)CTC>CTG	p.L145L	RPN2_uc002xgo.3_Silent_p.L145L|RPN2_uc010gfw.2_Intron|RPN2_uc002xgq.2_Silent_p.L113L	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	145	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)												0.29588	262.911989	272.867341	79	188	KEEP	---	---	---	---	capture		Silent	SNP	35827584	35827584	14087	20	C	G	G	G	366	29	RPN2	3	3
C20orf111	51526	broad.mit.edu	37	20	42831602	42831602	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr20:42831602C>A	uc002xlk.2	-	c.190G>T	c.(190-192)GGG>TGG	p.G64W		NM_016470	NP_057554	Q9NX31	CT111_HUMAN	oxidative stress responsive 1	64											0		Myeloproliferative disorder(115;0.028)	COAD - Colon adenocarcinoma(18;0.00189)											0.3	80.60228	83.811513	27	63	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	42831602	42831602	2156	20	C	A	A	A	299	23	C20orf111	1	1
DIDO1	11083	broad.mit.edu	37	20	61525430	61525430	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr20:61525430C>G	uc002ydr.1	-	c.2689G>C	c.(2689-2691)GAT>CAT	p.D897H	DIDO1_uc002yds.1_Missense_Mutation_p.D897H|DIDO1_uc002ydt.1_Missense_Mutation_p.D897H|DIDO1_uc002ydu.1_Missense_Mutation_p.D897H	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	897					apoptosis	cytoplasm|nucleus	zinc ion binding			ovary(3)	3	Breast(26;5.68e-08)					Melanoma(25;381 482 3385 5362 7955 17159 17174 40604 47095)								0.12069	13.581008	21.763432	7	51	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	61525430	61525430	4701	20	C	G	G	G	390	30	DIDO1	3	3
PCNT	5116	broad.mit.edu	37	21	47783764	47783764	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr21:47783764G>C	uc002zji.3	+	c.2524G>C	c.(2524-2526)GAG>CAG	p.E842Q	PCNT_uc002zjj.2_Missense_Mutation_p.E724Q	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	842					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)													0.526316	29.641373	29.646642	10	9	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	47783764	47783764	12010	21	G	C	C	C	533	41	PCNT	3	3
ZNF70	7621	broad.mit.edu	37	22	24087099	24087099	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr22:24087099G>A	uc002zxs.2	-	c.229C>T	c.(229-231)CAA>TAA	p.Q77*	ZNF70_uc002zxr.1_5'Flank	NM_021916	NP_068735	Q9UC06	ZNF70_HUMAN	zinc finger protein 70	77					regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2														0.171053	55.24881	70.805113	26	126	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	24087099	24087099	18698	22	G	A	A	A	585	45	ZNF70	5	2
SEZ6L	23544	broad.mit.edu	37	22	26747039	26747039	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr22:26747039G>T	uc003acb.2	+	c.2429G>T	c.(2428-2430)GGA>GTA	p.G810V	SEZ6L_uc003acc.2_Missense_Mutation_p.G810V|SEZ6L_uc011akc.1_Missense_Mutation_p.G810V|SEZ6L_uc003acd.2_Intron|SEZ6L_uc011akd.1_Missense_Mutation_p.G810V|SEZ6L_uc003ace.2_Missense_Mutation_p.G810V|SEZ6L_uc003acf.1_Missense_Mutation_p.G583V|SEZ6L_uc010gvc.1_Missense_Mutation_p.G583V|SEZ6L_uc011ake.1_Non-coding_Transcript	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	810	Sushi 4.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6														0.186441	23.988168	29.424683	11	48	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	26747039	26747039	14632	22	G	T	T	T	533	41	SEZ6L	2	2
C22orf33	339669	broad.mit.edu	37	22	37387544	37387544	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr22:37387544A>T	uc003aqf.2	-	c.723T>A	c.(721-723)CAT>CAA	p.H241Q	C22orf33_uc003aqe.2_Missense_Mutation_p.H156Q	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	241											0														0.407767	282.264742	283.795223	84	122	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	37387544	37387544	2226	22	A	T	T	T	102	8	C22orf33	3	3
MYO7B	4648	broad.mit.edu	37	2	128366435	128366435	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:128366435G>A	uc002top.2	+	c.2796G>A	c.(2794-2796)CAG>CAA	p.Q932Q		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	932						apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)										0.5	7.450112	7.450112	2	2	KEEP	---	---	---	---	capture		Silent	SNP	128366435	128366435	10478	2	G	A	A	A	451	35	MYO7B	2	2
GPR39	2863	broad.mit.edu	37	2	133174758	133174758	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:133174758A>G	uc002ttl.2	+	c.143A>G	c.(142-144)AAC>AGC	p.N48S		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	48	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0														0.426471	102.366653	102.686928	29	39	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	133174758	133174758	6968	2	A	G	G	G	26	2	GPR39	4	4
TANK	10010	broad.mit.edu	37	2	162036261	162036261	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:162036261T>A	uc002ubr.1	+	c.88T>A	c.(88-90)TTA>ATA	p.L30I	TANK_uc002ubq.1_Missense_Mutation_p.L30I|TANK_uc002ubs.2_Missense_Mutation_p.L30I	NM_004180	NP_004171	Q92844	TANK_HUMAN	TRAF interacting protein TANK isoform a	30						cytosol	metal ion binding|protein binding				0														0.138889	18.299346	27.373635	10	62	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	162036261	162036261	16067	2	T	A	A	A	673	52	TANK	3	3
KCNH7	90134	broad.mit.edu	37	2	163253285	163253285	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:163253285C>G	uc002uch.1	-	c.2578G>C	c.(2578-2580)GAG>CAG	p.E860Q		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	860	Cytoplasmic (Potential).|cNMP.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)	3					Ibutilide(DB00308)	GBM(196;1492 2208 17507 24132 45496)								0.536232	141.1812	141.259949	37	32	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	163253285	163253285	8342	2	C	G	G	G	416	32	KCNH7	3	3
LRP2	4036	broad.mit.edu	37	2	170148767	170148767	+	Silent	SNP	T	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:170148767T>A	uc002ues.2	-	c.765A>T	c.(763-765)GGA>GGT	p.G255G	LRP2_uc010zdf.1_Silent_p.G255G	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	255	LDL-receptor class A 6.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	23				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)					2055				0.194118	79.07334	93.914753	33	137	KEEP	---	---	---	---	capture		Silent	SNP	170148767	170148767	9329	2	T	A	A	A	639	50	LRP2	3	3
AGPS	8540	broad.mit.edu	37	2	178402821	178402821	+	Silent	SNP	A	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:178402821A>G	uc002ull.2	+	c.1875A>G	c.(1873-1875)CAA>CAG	p.Q625Q	AGPS_uc010zfb.1_Silent_p.Q535Q	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	625					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)											0.108527	23.451467	43.041422	14	115	KEEP	---	---	---	---	capture		Silent	SNP	178402821	178402821	397	2	A	G	G	G	50	4	AGPS	4	4
CLK1	1195	broad.mit.edu	37	2	201719419	201719419	+	Splice_Site_SNP	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:201719419C>A	uc010zhi.1	-	c.1267_splice	c.e11-1	p.T423_splice	CLK1_uc002uwd.2_Splice_Site_SNP_p.T204_splice|CLK1_uc002uwe.2_Splice_Site_SNP_p.T381_splice|CLK1_uc002uwf.2_Splice_Site_SNP_p.T155_splice|CLK1_uc002uwg.2_Splice_Site_SNP_p.T230_splice|CLK1_uc010fsv.2_Splice_Site_SNP	NM_001162407	NP_001155879			CDC-like kinase 1 isoform 2						cell proliferation	nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			pancreas(2)	2										173				0.166667	44.931818	59.475596	23	115	KEEP	---	---	---	---	capture		Splice_Site_SNP	SNP	201719419	201719419	3674	2	C	A	A	A	416	32	CLK1	5	2
POLR1A	25885	broad.mit.edu	37	2	86305044	86305044	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr2:86305044C>T	uc002sqs.2	-	c.1318G>A	c.(1318-1320)GCT>ACT	p.A440T		NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	440				YA -> ST (in Ref. 1; AAC99959).	termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)	2														0.180995	93.17424	114.303975	40	181	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	86305044	86305044	12637	2	C	T	T	T	351	27	POLR1A	1	1
TOMM70A	9868	broad.mit.edu	37	3	100100548	100100548	+	Silent	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:100100548C>A	uc003dtw.2	-	c.795G>T	c.(793-795)ACG>ACT	p.T265T		NM_014820	NP_055635	O94826	TOM70_HUMAN	translocase of outer mitochondrial membrane 70	265	Cytoplasmic (Potential).				protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane translocase complex	protein binding|protein transmembrane transporter activity			ovary(1)	1														0.318584	114.762821	118.066613	36	77	KEEP	---	---	---	---	capture		Silent	SNP	100100548	100100548	16904	3	C	A	A	A	288	23	TOMM70A	1	1
MORC1	27136	broad.mit.edu	37	3	108776234	108776234	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:108776234G>A	uc003dxl.2	-	c.1131C>T	c.(1129-1131)ATC>ATT	p.I377I	MORC1_uc011bhn.1_Silent_p.I377I	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	377					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|breast(2)	5														0.296	206.245491	215.555421	74	176	KEEP	---	---	---	---	capture		Silent	SNP	108776234	108776234	10092	3	G	A	A	A	577	45	MORC1	2	2
ATP6V1A	523	broad.mit.edu	37	3	113505180	113505180	+	Silent	SNP	A	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:113505180A>C	uc003eao.2	+	c.666A>C	c.(664-666)CCA>CCC	p.P222P	ATP6V1A_uc011bik.1_Silent_p.P189P	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	222					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)	2														0.152416	89.893129	120.998703	41	228	KEEP	---	---	---	---	capture		Silent	SNP	113505180	113505180	1196	3	A	C	C	C	80	7	ATP6V1A	4	4
CCDC39	339829	broad.mit.edu	37	3	180372586	180372586	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:180372586C>A	uc010hxe.2	-	c.894G>T	c.(892-894)CAG>CAT	p.Q298H	CCDC39_uc003fkn.2_Non-coding_Transcript	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	298					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)											0.310345	55.527847	57.386486	18	40	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	180372586	180372586	2933	3	C	A	A	A	311	24	CCDC39	2	2
TM4SF19	116211	broad.mit.edu	37	3	196050777	196050777	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:196050777G>T	uc003fwl.1	-	c.541C>A	c.(541-543)CTG>ATG	p.L181M	TM4SF19_uc003fwj.2_Non-coding_Transcript|TM4SF19_uc010iad.1_Missense_Mutation_p.F179L|TM4SF19_uc011btv.1_Missense_Mutation_p.L155M	NM_138461	NP_612470	Q96DZ7	T4S19_HUMAN	transmembrane 4 L six family member 19	181	Helical; (Potential).					integral to membrane					0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;3.94e-24)|all cancers(36;4.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.53e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00314)										0.25641	24.127877	26.22926	10	29	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	196050777	196050777	16498	3	G	T	T	T	425	33	TM4SF19	2	2
GADL1	339896	broad.mit.edu	37	3	30769763	30769763	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:30769763C>T	uc003cep.2	-	c.1537G>A	c.(1537-1539)GAG>AAG	p.E513K		NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	513					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)									0.224138	95.825521	108.001507	39	135	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	30769763	30769763	6436	3	C	T	T	T	377	29	GADL1	2	2
CCR8	1237	broad.mit.edu	37	3	39374435	39374435	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:39374435T>G	uc010hhr.2	+	c.613T>G	c.(613-615)TTA>GTA	p.L205V	CCR8_uc003cjm.2_Missense_Mutation_p.L122V	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	205	Helical; Name=5; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)										0.495495	202.926704	202.928635	55	56	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	39374435	39374435	3074	3	T	G	G	G	829	64	CCR8	4	4
VPRBP	9730	broad.mit.edu	37	3	51440599	51440599	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr3:51440599C>A	uc003dbe.1	-	c.4443G>T	c.(4441-4443)GAG>GAT	p.E1481D	VPRBP_uc003dbf.1_Missense_Mutation_p.E757D	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	1481	Asp/Glu-rich (acidic).|Interaction with NF2.				interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)										0.425	55.868562	56.064922	17	23	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	51440599	51440599	17752	3	C	A	A	A	311	24	VPRBP	2	2
TRPC3	7222	broad.mit.edu	37	4	122828657	122828657	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:122828657C>A	uc003ieg.2	-	c.1858G>T	c.(1858-1860)GTG>TTG	p.V620L	TRPC3_uc010inr.2_Missense_Mutation_p.V492L|TRPC3_uc003ief.2_Missense_Mutation_p.V547L|TRPC3_uc011cgl.1_Missense_Mutation_p.V284L	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	535	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2														0.446429	164.53804	164.81791	50	62	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	122828657	122828657	17130	4	C	A	A	A	221	17	TRPC3	2	2
ZNF141	7700	broad.mit.edu	37	4	367007	367007	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:367007G>A	uc003gaa.2	+	c.781G>A	c.(781-783)GGC>AGC	p.G261S	ZNF141_uc003gab.2_Intron	NM_003441	NP_003432	Q15928	ZN141_HUMAN	zinc finger protein 141	261	C2H2-type 4.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|specific RNA polymerase II transcription factor activity|zinc ion binding				0														0.414286	96.662801	97.111936	29	41	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	367007	367007	18321	4	G	A	A	A	611	47	ZNF141	2	2
NFXL1	152518	broad.mit.edu	37	4	47892633	47892633	+	Silent	SNP	T	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:47892633T>G	uc010igh.2	-	c.1540A>C	c.(1540-1542)AGA>CGA	p.R514R	NFXL1_uc003gxp.2_Silent_p.R514R|NFXL1_uc003gxq.3_Non-coding_Transcript|NFXL1_uc010igi.2_Silent_p.R514R	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	514	NF-X1-type 7.				regulation of transcription, DNA-dependent	integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1														0.258065	64.55267	69.488491	24	69	KEEP	---	---	---	---	capture		Silent	SNP	47892633	47892633	10788	4	T	G	G	G	713	55	NFXL1	4	4
PIGG	54872	broad.mit.edu	37	4	515659	515659	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:515659G>C	uc003gak.3	+	c.1543G>C	c.(1543-1545)GCC>CCC	p.A515P	PIGG_uc003gaj.3_Missense_Mutation_p.A507P|PIGG_uc011bux.1_Non-coding_Transcript|PIGG_uc010ibf.2_Missense_Mutation_p.A382P|PIGG_uc003gal.3_Missense_Mutation_p.A426P|PIGG_uc003gai.2_Intron|PIGG_uc011buw.1_3'UTR|PIGG_uc003gam.2_3'UTR|PIGG_uc003gan.2_Missense_Mutation_p.A426P	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	515	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			ovary(1)|central_nervous_system(1)	2														0.276596	41.355274	43.466082	13	34	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	515659	515659	12312	4	G	C	C	C	546	42	PIGG	3	3
CCDC158	339965	broad.mit.edu	37	4	77247123	77247123	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:77247123G>C	uc003hkb.3	-	c.3044C>G	c.(3043-3045)TCT>TGT	p.S1015C		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	1015	Ser-rich.									ovary(2)|pancreas(1)	3														0.17029	117.443722	145.828738	47	229	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	77247123	77247123	2912	4	G	C	C	C	429	33	CCDC158	3	3
SLCO4C1	353189	broad.mit.edu	37	5	101631628	101631628	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:101631628G>A	uc003knm.2	-	c.339C>T	c.(337-339)CTC>CTT	p.L113L		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	113	Helical; Name=1; (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)										0.714286	36.256009	36.832754	10	4	KEEP	---	---	---	---	capture		Silent	SNP	101631628	101631628	15227	5	G	A	A	A	418	33	SLCO4C1	2	2
FBN2	2201	broad.mit.edu	37	5	127599169	127599169	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:127599169C>A	uc003kuu.2	-	c.8140G>T	c.(8140-8142)GAG>TAG	p.E2714*		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2714	EGF-like 47; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|kidney(1)|pancreas(1)	14		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)						1552				0.655172	171.987702	173.834255	57	30	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	127599169	127599169	5939	5	C	A	A	A	390	30	FBN2	5	2
PCDHB1	29930	broad.mit.edu	37	5	140431299	140431299	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:140431299G>C	uc003lik.1	+	c.244G>C	c.(244-246)GGA>CGA	p.G82R		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	82	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)											0.230769	31.47155	34.926614	12	40	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	140431299	140431299	11954	5	G	C	C	C	559	43	PCDHB1	3	3
PCDHB7	56129	broad.mit.edu	37	5	140553584	140553584	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:140553584C>T	uc003lit.2	+	c.1168C>T	c.(1168-1170)CCC>TCC	p.P390S		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	390	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)											0.526316	34.850882	34.862288	10	9	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	140553584	140553584	11967	5	C	T	T	T	286	22	PCDHB7	2	2
CDH9	1007	broad.mit.edu	37	5	26881693	26881693	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:26881693T>C	uc003jgs.1	-	c.1922A>G	c.(1921-1923)AAA>AGA	p.K641R	CDH9_uc011cnv.1_Missense_Mutation_p.K234R	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	641	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)	5						Melanoma(8;187 585 15745 40864 52829)								0.277228	88.957489	93.467304	28	73	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	26881693	26881693	3246	5	T	C	C	C	832	64	CDH9	4	4
EGFLAM	133584	broad.mit.edu	37	5	38406296	38406296	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr5:38406296G>A	uc003jlc.1	+	c.781G>A	c.(781-783)GAT>AAT	p.D261N	EGFLAM_uc003jlb.1_Missense_Mutation_p.D261N|EGFLAM_uc003jle.1_Missense_Mutation_p.D27N|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	261						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|ovary(1)	4	all_lung(31;0.000385)					Colon(62;485 1295 3347 17454)								0.336957	92.990898	95.156971	31	61	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	38406296	38406296	5155	5	G	A	A	A	585	45	EGFLAM	2	2
AKD1	221264	broad.mit.edu	37	6	109814589	109814589	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:109814589C>T	uc003ptn.2	-	c.5719G>A	c.(5719-5721)GAC>AAC	p.D1907N	AKD1_uc011eas.1_Missense_Mutation_p.D292N	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1907					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1														0.604651	276.177189	277.412977	78	51	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	109814589	109814589	463	6	C	T	T	T	416	32	AKD1	2	2
FAM184A	79632	broad.mit.edu	37	6	119345909	119345909	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:119345909C>T	uc003pyj.2	-	c.229G>A	c.(229-231)GAA>AAA	p.E77K	FAM184A_uc003pyk.3_5'UTR|FAM184A_uc003pyl.3_5'UTR	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	77	Potential.									ovary(2)|central_nervous_system(2)|pancreas(1)	5														0.607143	56.279583	56.560559	17	11	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	119345909	119345909	5718	6	C	T	T	T	377	29	FAM184A	2	2
SLC44A4	80736	broad.mit.edu	37	6	31833121	31833121	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:31833121C>T	uc010jti.2	-	c.1731G>A	c.(1729-1731)GCG>GCA	p.A577A	NEU1_uc003nxq.3_5'Flank|NEU1_uc010jtg.2_5'Flank|NEU1_uc003nxr.3_5'Flank|NEU1_uc010jth.2_5'Flank|NEU1_uc003nxs.3_5'Flank	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	577	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)									0.159091	29.19127	38.937215	14	74	KEEP	---	---	---	---	capture		Silent	SNP	31833121	31833121	15135	6	C	T	T	T	236	19	SLC44A4	1	1
ITPR3	3710	broad.mit.edu	37	6	33632679	33632679	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:33632679C>A	uc011drk.1	+	c.1181C>A	c.(1180-1182)ACC>AAC	p.T394N		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	394	Cytoplasmic (Potential).|MIR 5.				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			central_nervous_system(5)|ovary(3)|lung(1)|kidney(1)	10														0.172414	10.556113	13.496804	5	24	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	33632679	33632679	8226	6	C	A	A	A	234	18	ITPR3	2	2
TTBK1	84630	broad.mit.edu	37	6	43225669	43225669	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:43225669C>T	uc003ouq.1	+	c.981C>T	c.(979-981)CCC>CCT	p.P327P		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	327					protein phosphorylation	cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)							85				0.666667	30.806431	31.162534	10	5	KEEP	---	---	---	---	capture		Silent	SNP	43225669	43225669	17230	6	C	T	T	T	275	22	TTBK1	2	2
RPP40	10799	broad.mit.edu	37	6	4996626	4996626	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:4996626A>T	uc003mwl.2	-	c.588T>A	c.(586-588)TAT>TAA	p.Y196*	RPP40_uc003mwm.2_Nonsense_Mutation_p.Y173*	NM_006638	NP_006629	O75818	RPP40_HUMAN	ribonuclease P 40kDa subunit	196					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0895)												0.155844	50.396762	67.814299	24	130	KEEP	---	---	---	---	capture		Nonsense_Mutation	SNP	4996626	4996626	14093	6	A	T	T	T	50	4	RPP40	5	3
SLC35A1	10559	broad.mit.edu	37	6	88218187	88218187	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr6:88218187G>A	uc011dzj.1	+	c.624G>A	c.(622-624)GTG>GTA	p.V208V	SLC35A1_uc003plx.2_Non-coding_Transcript|SLC35A1_uc010kbw.2_Silent_p.V56V|SLC35A1_uc003plz.2_Intron|SLC35A1_uc011dzi.1_Silent_p.V74V|SLC35A1_uc003ply.2_Intron|SLC35A1_uc010kbx.2_Intron|SLC35A1_uc010kby.2_Intron|SLC35A1_uc011dzk.1_5'Flank	NM_006416	NP_006407	P78382	S35A1_HUMAN	solute carrier family 35 (CMP-sialic acid	208	Cytoplasmic (Potential).				carbohydrate metabolic process|protein modification process	Golgi membrane|integral to plasma membrane	CMP-N-acetylneuraminate transmembrane transporter activity|sugar:hydrogen symporter activity				0		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		NSCLC(183;214 2117 17033 22638 44782)|Ovarian(87;1008 1343 9644 42916 50932)								0.48	39.098365	39.107102	12	13	KEEP	---	---	---	---	capture		Silent	SNP	88218187	88218187	15067	6	G	A	A	A	574	45	SLC35A1	2	2
LRCH4	4034	broad.mit.edu	37	7	100179736	100179736	+	Silent	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:100179736G>T	uc003uvj.2	-	c.420C>A	c.(418-420)GTC>GTA	p.V140V	LRCH4_uc010lgz.2_Non-coding_Transcript|LRCH4_uc003uvi.2_Non-coding_Transcript|LRCH4_uc011kjx.1_Non-coding_Transcript	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	140	LRR 5.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)													0.363636	11.496594	11.676733	4	7	KEEP	---	---	---	---	capture		Silent	SNP	100179736	100179736	9308	7	G	T	T	T	522	41	LRCH4	2	2
SPAM1	6677	broad.mit.edu	37	7	123599915	123599915	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:123599915G>A	uc003vle.2	+	c.1422G>A	c.(1420-1422)GAG>GAA	p.E474E	SPAM1_uc011koa.1_Silent_p.E130E|SPAM1_uc003vld.2_Silent_p.E474E|SPAM1_uc003vlf.3_Silent_p.E474E|SPAM1_uc010lku.2_Silent_p.E474E	NM_003117	NP_003108	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 1	474					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)									0.304762	95.159397	98.730495	32	73	KEEP	---	---	---	---	capture		Silent	SNP	123599915	123599915	15489	7	G	A	A	A	425	33	SPAM1	2	2
GALNT11	63917	broad.mit.edu	37	7	151818708	151818708	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:151818708C>T	uc010lqg.1	+	c.1773C>T	c.(1771-1773)GTC>GTT	p.V591V	GALNT11_uc011kvm.1_Silent_p.V510V|GALNT11_uc003wku.2_Silent_p.V591V	NM_022087	NP_071370	Q8NCW6	GLT11_HUMAN	N-acetylgalactosaminyltransferase 11	591	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.214)	OV - Ovarian serous cystadenocarcinoma(82;0.00168)	UCEC - Uterine corpus endometrioid carcinoma (81;0.177)|BRCA - Breast invasive adenocarcinoma(188;0.0932)										0.179487	15.0022	18.770658	7	32	KEEP	---	---	---	---	capture		Silent	SNP	151818708	151818708	6473	7	C	T	T	T	392	31	GALNT11	1	1
USP42	84132	broad.mit.edu	37	7	6189291	6189291	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:6189291C>T	uc011jwo.1	+	c.1464C>T	c.(1462-1464)TCC>TCT	p.S488S	USP42_uc010kth.1_Silent_p.S421S|USP42_uc011jwp.1_Silent_p.S488S|USP42_uc011jwq.1_Silent_p.S295S|USP42_uc011jwr.1_Silent_p.S333S	NM_032172	NP_115548	Q9H9J4	UBP42_HUMAN	ubiquitin specific peptidase 42	488					cell differentiation|protein deubiquitination|spermatogenesis|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(2)|pancreas(1)	3		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.108)|OV - Ovarian serous cystadenocarcinoma(56;5.77e-14)										0.283784	61.441691	64.549381	21	53	KEEP	---	---	---	---	capture		Silent	SNP	6189291	6189291	17637	7	C	T	T	T	262	21	USP42	2	2
ZNF655	79027	broad.mit.edu	37	7	99171066	99171066	+	Silent	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr7:99171066C>T	uc010lga.2	+	c.1440C>T	c.(1438-1440)TTC>TTT	p.F480F	ZNF655_uc003urh.2_Silent_p.F445F|ZNF655_uc010lgc.2_Silent_p.F480F|ZNF655_uc003urj.2_Silent_p.F445F|ZNF655_uc003urk.2_Silent_p.F282F|ZNF655_uc010lgd.2_Silent_p.F282F	NM_001083956	NP_001077425	Q8N720	ZN655_HUMAN	zinc finger protein 655 isoform f	445					G1 phase|regulation of mitotic cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_epithelial(64;3.19e-09)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)													0.142857	35.328951	51.679887	19	114	KEEP	---	---	---	---	capture		Silent	SNP	99171066	99171066	18663	7	C	T	T	T	376	29	ZNF655	2	2
EBAG9	9166	broad.mit.edu	37	8	110576697	110576697	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:110576697G>C	uc003ynf.2	+	c.551G>C	c.(550-552)AGA>ACA	p.R184T	EBAG9_uc003yng.2_Missense_Mutation_p.R184T	NM_198120	NP_936056	O00559	RCAS1_HUMAN	estrogen receptor binding site associated	184	Cytoplasmic (Potential).|Potential.				apoptosis|regulation of cell growth	focal adhesion|Golgi membrane|integral to membrane|soluble fraction	apoptotic protease activator activity				0			OV - Ovarian serous cystadenocarcinoma(57;1.39e-14)											0.367816	110.576674	111.913361	32	55	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	110576697	110576697	5065	8	G	C	C	C	429	33	EBAG9	3	3
LZTS1	11178	broad.mit.edu	37	8	20112537	20112537	+	Silent	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:20112537G>A	uc003wzr.2	-	c.156C>T	c.(154-156)CAC>CAT	p.H52H	LZTS1_uc010ltg.1_Silent_p.H52H	NM_021020	NP_066300	Q9Y250	LZTS1_HUMAN	leucine zipper, putative tumor suppressor 1	52					cell cycle|regulation of transcription, DNA-dependent|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	cell junction|dendritic spine|Golgi apparatus|nucleolus|nucleoplasm|postsynaptic density|postsynaptic membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				Colorectal(74;0.0511)|COAD - Colon adenocarcinoma(73;0.207)										0.435897	56.970698	57.110212	17	22	KEEP	---	---	---	---	capture		Silent	SNP	20112537	20112537	9515	8	G	A	A	A	516	40	LZTS1	1	1
WHSC1L1	54904	broad.mit.edu	37	8	38205058	38205058	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:38205058C>T	uc003xli.2	-	c.632G>A	c.(631-633)CGC>CAC	p.R211H	WHSC1L1_uc011lbm.1_Missense_Mutation_p.R211H|WHSC1L1_uc010lwe.2_Missense_Mutation_p.R211H|WHSC1L1_uc003xlj.2_Missense_Mutation_p.R211H	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	211					cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	histone-lysine N-methyltransferase activity|zinc ion binding				0	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)							521				0.175355	82.841512	103.814118	37	174	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	38205058	38205058	17937	8	C	T	T	T	351	27	WHSC1L1	1	1
MSC	9242	broad.mit.edu	37	8	72754901	72754901	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:72754901C>T	uc003xyx.1	-	c.616G>A	c.(616-618)GCT>ACT	p.A206T		NM_005098	NP_005089	O60682	MUSC_HUMAN	musculin	206					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulator activity				0	Breast(64;0.176)		Epithelial(68;0.137)|BRCA - Breast invasive adenocarcinoma(89;0.203)											0.20122	156.204409	183.389129	66	262	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	72754901	72754901	10261	8	C	T	T	T	351	27	MSC	1	1
PI15	51050	broad.mit.edu	37	8	75756265	75756266	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:75756265_75756266GC>AT	uc003yal.2	+	c.323_324GC>AT	c.(322-324)TGC>TAT	p.C108Y	PI15_uc003yam.2_Missense_Mutation_p.C108Y	NM_015886	NP_056970	O43692	PI15_HUMAN	protease inhibitor 15 preproprotein	108						extracellular region	peptidase inhibitor activity			central_nervous_system(2)|ovary(1)	3	Breast(64;0.137)		BRCA - Breast invasive adenocarcinoma(89;0.104)|Epithelial(68;0.118)											0.234848	69.645007	78.147491	31	101	KEEP	---	---	---	---	capture		Missense_Mutation	DNP	75756265	75756266	12292	8	GC	AT	AT	AT	598	46	PI15	2	2
ZFHX4	79776	broad.mit.edu	37	8	77617598	77617598	+	Silent	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:77617598C>A	uc003yav.2	+	c.1275C>A	c.(1273-1275)CTC>CTA	p.L425L	ZFHX4_uc003yat.1_Silent_p.L425L|ZFHX4_uc003yau.1_Silent_p.L425L|ZFHX4_uc003yaw.1_Silent_p.L425L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	425					regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulator activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)											0.464286	40.971737	41.002923	13	15	KEEP	---	---	---	---	capture		Silent	SNP	77617598	77617598	18223	8	C	A	A	A	366	29	ZFHX4	2	2
ZFHX4	79776	broad.mit.edu	37	8	77617600	77617600	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr8:77617600G>A	uc003yav.2	+	c.1277G>A	c.(1276-1278)AGC>AAC	p.S426N	ZFHX4_uc003yat.1_Missense_Mutation_p.S426N|ZFHX4_uc003yau.1_Missense_Mutation_p.S426N|ZFHX4_uc003yaw.1_Missense_Mutation_p.S426N	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	426					regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulator activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)											0.464286	43.572492	43.603618	13	15	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	77617600	77617600	18223	8	G	A	A	A	442	34	ZFHX4	2	2
GOLGA1	2800	broad.mit.edu	37	9	127693657	127693657	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr9:127693657T>C	uc004bpc.2	-	c.164A>G	c.(163-165)GAT>GGT	p.D55G	GOLGA1_uc010mwt.1_Missense_Mutation_p.D55G	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	55	Potential.					Golgi cisterna membrane				ovary(1)	1														0.55	80.654332	80.741366	22	18	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	127693657	127693657	6820	9	T	C	C	C	650	50	GOLGA1	4	4
TTC16	158248	broad.mit.edu	37	9	130479208	130479208	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr9:130479208T>A	uc004brq.1	+	c.104T>A	c.(103-105)ATC>AAC	p.I35N	PTRH1_uc004brm.2_5'Flank|PTRH1_uc004bro.2_5'Flank|PTRH1_uc010mxm.2_5'UTR|PTRH1_uc011mah.1_5'UTR|TTC16_uc011mai.1_Missense_Mutation_p.I35N|TTC16_uc004brr.1_5'Flank	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	35							binding				0														0.235294	10.591493	11.680738	4	13	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	130479208	130479208	17237	9	T	A	A	A	650	50	TTC16	3	3
C9orf131	138724	broad.mit.edu	37	9	35042966	35042966	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr9:35042966C>A	uc003zvw.2	+	c.340C>A	c.(340-342)CTG>ATG	p.L114M	C9orf131_uc003zvu.2_Missense_Mutation_p.L66M|C9orf131_uc003zvv.2_Missense_Mutation_p.L41M|C9orf131_uc003zvx.2_Missense_Mutation_p.L79M	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	114											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)											0.531915	77.274511	77.315862	25	22	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	35042966	35042966	2570	9	C	A	A	A	415	32	C9orf131	2	2
VCP	7415	broad.mit.edu	37	9	35059557	35059557	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr9:35059557G>T	uc003zvy.2	-	c.1937C>A	c.(1936-1938)CCA>CAA	p.P646Q	VCP_uc003zvz.2_Non-coding_Transcript|VCP_uc010mkh.1_Missense_Mutation_p.P315Q|VCP_uc010mki.1_Missense_Mutation_p.P601Q	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	646					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding				0			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)											0.522727	73.522145	73.541642	23	21	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	35059557	35059557	17705	9	G	T	T	T	611	47	VCP	2	2
RECK	8434	broad.mit.edu	37	9	36112407	36112407	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr9:36112407A>T	uc003zyv.2	+	c.1994A>T	c.(1993-1995)CAG>CTG	p.Q665L	RECK_uc003zyw.2_Missense_Mutation_p.Q537L|RECK_uc003zyx.2_Non-coding_Transcript	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	665	Kazal-like 1.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)											0.548387	119.156038	119.28226	34	28	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	36112407	36112407	13669	9	A	T	T	T	91	7	RECK	3	3
FAM47B	170062	broad.mit.edu	37	X	34962140	34962140	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:34962140C>T	uc004ddi.1	+	c.1192C>T	c.(1192-1194)CGC>TGC	p.R398C		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	398										ovary(3)|breast(1)	4														0.666667	130.918111	132.246155	36	18	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	34962140	34962140	5791	23	C	T	T	T	299	23	FAM47B	1	1
PHF16	9767	broad.mit.edu	37	X	46913983	46913983	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:46913983C>T	uc004dgx.2	+	c.1396C>T	c.(1396-1398)CAC>TAC	p.H466Y	PHF16_uc004dgy.2_Missense_Mutation_p.H466Y	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	466					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0														0.6	49.228531	49.446774	15	10	KEEP	---	---	---	---	capture		Missense_Mutation	SNP	46913983	46913983	12250	23	C	T	T	T	377	29	PHF16	2	2
NLGN4X	57502	broad.mit.edu	37	X	5827175	5827176	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:5827175_5827176TC>AA	uc010ndi.2	-	c.841_842GA>TT	c.(841-843)GAC>TTC	p.D281F	NLGN4X_uc004crp.2_Missense_Mutation_p.D264F|NLGN4X_uc010ndh.2_Missense_Mutation_p.D244F|NLGN4X_uc004crq.2_Missense_Mutation_p.D244F|NLGN4X_uc004crr.2_Missense_Mutation_p.D244F|NLGN4X_uc010ndj.2_Missense_Mutation_p.D244F	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	244	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|regulation of synaptic transmission|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	carboxylesterase activity|chloride ion binding|neurexin binding|protein homodimerization activity			large_intestine(1)|skin(1)	2														0.208333	12.662378	14.552418	5	19	KEEP	---	---	---	---	capture		Missense_Mutation	DNP	5827175	5827176	10867	23	TC	AA	AA	AA	754	58	NLGN4X	3	3
TNMD	64102	broad.mit.edu	37	X	99854065	99854065	+	Silent	SNP	C	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chrX:99854065C>G	uc004efy.3	+	c.630C>G	c.(628-630)GCC>GCG	p.A210A	TNMD_uc004efz.2_3'UTR	NM_022144	NP_071427	Q9H2S6	TNMD_HUMAN	tenomodulin	210	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1														0.425926	76.513328	76.772409	23	31	KEEP	---	---	---	---	capture		Silent	SNP	99854065	99854065	16863	23	C	G	G	G	262	21	TNMD	3	3
ZFP36	7538	broad.mit.edu	37	19	39899230	39899231	+	Frame_Shift_Ins	INS	-	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:39899230_39899231insG	uc002olh.1	+	c.872_873insG	c.(871-873)CTGfs	p.L291fs	ZFP36_uc010egn.1_Frame_Shift_Ins_p.W164fs	NM_003407	NP_003398	P26651	TTP_HUMAN	zinc finger protein 36, C3H type, homolog	291					positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	cytosol|nucleus	AU-rich element binding|DNA binding|mRNA binding|protein binding|single-stranded RNA binding|zinc ion binding			pancreas(1)	1	all_cancers(60;6.54e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.53e-06)|Ovarian(47;0.0512)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			NSCLC(67;1164 1324 12056 21056 30097)								0.33			2	4		---	---	---	---	capture_indel		Frame_Shift_Ins	INS	39899230	39899231	18233	19	-	G	G	G	715	55	ZFP36	5	5
LIN7B	64130	broad.mit.edu	37	19	49619729	49619729	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:49619729_49619729delG	uc002pmp.2	+	c.438_438delG	c.(436-438)GTGfs	p.V146fs	PPFIA3_uc002pmr.2_5'Flank|PPFIA3_uc010yai.1_5'Flank	NM_022165	NP_071448	Q9HAP6	LIN7B_HUMAN	lin-7 homolog B	146	PDZ.				exocytosis|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein domain specific binding				0		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;5e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000191)|GBM - Glioblastoma multiforme(486;0.00449)|Epithelial(262;0.01)										0.41			11	16		---	---	---	---	capture_indel		Frame_Shift_Del	DEL	49619729	49619729	9138	19	G	-	-	-	600	47	LIN7B	5	5
NDUFA11	126328	broad.mit.edu	37	19	5894765	5894765	+	Frame_Shift_Del	DEL	T	-	-			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr19:5894765_5894765delT	uc002mdq.1	-	c.414_414delA	c.(412-414)AAAfs	p.K138fs	FUT5_uc010duo.2_Intron|NDUFA11_uc002mdp.1_Intron|NDUFA11_uc002mdr.1_Non-coding_Transcript	NM_175614	NP_783313	Q86Y39	NDUAB_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	138					respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I	protein transporter activity			central_nervous_system(1)	1					NADH(DB00157)									0.33			2	4		---	---	---	---	capture_indel		Frame_Shift_Del	DEL	5894765	5894765	10660	19	T	-	-	-	777	60	NDUFA11	5	5
C1orf38	9473	broad.mit.edu	37	1	28208786	28208787	+	Frame_Shift_Ins	INS	-	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr1:28208786_28208787insG	uc001bpc.3	+	c.951_952insG	c.(949-954)TCAGGGfs	p.S317fs	C1orf38_uc001boz.2_Intron|C1orf38_uc001bpa.2_Intron|C1orf38_uc010ofn.1_Intron|C1orf38_uc010ofo.1_Intron	NM_001105556	NP_001099026	Q5TEJ8	THMS2_HUMAN	basement membrane-induced gene isoform 3	317_318	CABIT 2.				cell adhesion|inflammatory response					ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;0.000129)|Lung NSC(340;0.000259)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;2.52e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)										0.33			2	4		---	---	---	---	capture_indel		Frame_Shift_Ins	INS	28208786	28208787	2113	1	-	G	G	G	80	7	C1orf38	5	5
SPON2	10417	broad.mit.edu	37	4	1164242	1164243	+	Frame_Shift_Ins	INS	-	G	G			TCGA-55-1594-01	TCGA-55-1594-01										Phase_I	Unspecified				Illumina GAIIx	g.chr4:1164242_1164243insG	uc003gcn.3	-	c.758_759insC	c.(757-759)CCTfs	p.P253fs	SPON2_uc003gco.3_Frame_Shift_Ins_p.P253fs|SPON2_uc010ibr.2_Frame_Shift_Ins_p.P253fs|SPON2_uc003gcm.1_3'UTR	NM_012445	NP_036577	Q9BUD6	SPON2_HUMAN	spondin 2, extracellular matrix protein	253					axon guidance|cell adhesion|innate immune response	proteinaceous extracellular matrix	metal ion binding			central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00805)	UCEC - Uterine corpus endometrioid carcinoma (64;0.139)|Colorectal(103;0.19)										0.46			26	30		---	---	---	---	capture_indel		Frame_Shift_Ins	INS	1164242	1164243	15596	4	-	G	G	G	132	11	SPON2	5	5
