Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ARHGEF10L	55160	broad.mit.edu	36	1	17833633	17833633	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	17833633	17833633	ARHGEF10L	1	T	T	G	55
BAI2	576	broad.mit.edu	36	1	31978222	31978222	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	31978222	31978222	BAI2	1	C	C	T	18
SNIP1	79753	broad.mit.edu	36	1	37792280	37792280	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	37792280	37792280	SNIP1	1	C	C	T	23
CCDC163P	126661	broad.mit.edu	36	1	45737794	45737794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	45737794	45737794	CCDC163P	1	A	A	T	16
CYP4A22	284541	broad.mit.edu	36	1	47380453	47380453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	47380453	47380453	CYP4A22	1	C	C	T	26
C1orf175	374977	broad.mit.edu	36	1	54944716	54944716	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	54944716	54944716	C1orf175	1	C	C	T	27
ZNF644	84146	broad.mit.edu	36	1	91177507	91177507	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	91177507	91177507	ZNF644	1	T	T	A	51
CRTC2	200186	broad.mit.edu	36	1	152192375	152192375	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Nonsense_Mutation	SNP	152192375	152192375	CRTC2	1	G	G	A	39
ADAR	103	broad.mit.edu	36	1	152840787	152840787	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	152840787	152840787	ADAR	1	C	C	A	26
IQGAP3	128239	broad.mit.edu	36	1	154776269	154776269	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	154776269	154776269	IQGAP3	1	G	G	A	33
TDRD5	163589	broad.mit.edu	36	1	177926529	177926529	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	177926529	177926529	TDRD5	1	G	G	A	40
GPR25	2848	broad.mit.edu	36	1	199109766	199109766	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	199109766	199109766	GPR25	1	C	C	T	23
PRELP	5549	broad.mit.edu	36	1	201719708	201719708	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	201719708	201719708	PRELP	1	C	C	T	24
SIPA1L2	57568	broad.mit.edu	36	1	230717031	230717031	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	230717031	230717031	SIPA1L2	1	G	G	C	41
NLRP3	114548	broad.mit.edu	36	1	245664067	245664067	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	245664067	245664067	NLRP3	1	C	C	G	17
OR2L2	26246	broad.mit.edu	36	1	246268229	246268229	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	246268229	246268229	OR2L2	1	T	T	A	56
DIP2C	22982	broad.mit.edu	36	10	380992	380992	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	380992	380992	DIP2C	10	C	C	T	24
GTPBP4	23560	broad.mit.edu	36	10	1036802	1036802	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	1036802	1036802	GTPBP4	10	C	C	T	29
MAPK8	5599	broad.mit.edu	36	10	49298345	49298345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	49298345	49298345	MAPK8	10	C	C	T	24
CSTF2T	23283	broad.mit.edu	36	10	53128896	53128896	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	53128896	53128896	CSTF2T	10	C	C	T	17
VCL	7414	broad.mit.edu	36	10	75527093	75527093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	75527093	75527093	VCL	10	A	A	T	3
LDB1	8861	broad.mit.edu	36	10	103859187	103859187	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	103859187	103859187	LDB1	10	C	C	T	27
SEC23IP	11196	broad.mit.edu	36	10	121675724	121675724	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	121675724	121675724	SEC23IP	10	G	G	A	39
MKI67	4288	broad.mit.edu	36	10	129791611	129791611	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	129791611	129791611	MKI67	10	G	G	A	45
MUC5B	727897	broad.mit.edu	36	11	1204570	1204570	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	1204570	1204570	MUC5B	11	C	C	A	21
RIC3	79608	broad.mit.edu	36	11	8088973	8088973	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	8088973	8088973	RIC3	11	C	C	G	25
OR5T2	219464	broad.mit.edu	36	11	55756168	55756168	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	55756168	55756168	OR5T2	11	G	G	T	36
SYT7	9066	broad.mit.edu	36	11	61047909	61047909	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	61047909	61047909	SYT7	11	C	C	G	30
FADS3	3995	broad.mit.edu	36	11	61400413	61400413	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	61400413	61400413	FADS3	11	G	G	T	34
CACNA1C	775	broad.mit.edu	36	12	2670356	2670356	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	2670356	2670356	CACNA1C	12	T	T	A	63
ARID2	196528	broad.mit.edu	36	12	44531603	44531603	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	44531603	44531603	ARID2	12	C	C	T	26
ZDHHC17	23390	broad.mit.edu	36	12	75727712	75727712	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	75727712	75727712	ZDHHC17	12	C	C	T	32
TMPO	7112	broad.mit.edu	36	12	97451652	97451652	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Nonsense_Mutation	SNP	97451652	97451652	TMPO	12	G	G	T	45
NOS1	4842	broad.mit.edu	36	12	116149679	116149679	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	116149679	116149679	NOS1	12	G	G	T	43
LECT1	11061	broad.mit.edu	36	13	52175822	52175822	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	52175822	52175822	LECT1	13	G	G	C	47
SLC10A2	6555	broad.mit.edu	36	13	102501610	102501610	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Nonsense_Mutation	SNP	102501610	102501610	SLC10A2	13	G	G	C	48
GMPR2	51292	broad.mit.edu	36	14	23776199	23776199	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Splice_Site_SNP	SNP	23776199	23776199	GMPR2	14	G	G	C	44
L2HGDH	79944	broad.mit.edu	36	14	49839442	49839442	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	49839442	49839442	L2HGDH	14	C	C	G	25
NAA30	122830	broad.mit.edu	36	14	56927999	56927999	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	56927999	56927999	NAA30	14	C	C	T	24
POMT2	29954	broad.mit.edu	36	14	76832350	76832350	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	76832350	76832350	POMT2	14	C	C	A	29
C14orf102	55051	broad.mit.edu	36	14	89838915	89838915	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	89838915	89838915	C14orf102	14	T	T	G	59
TTC7B	145567	broad.mit.edu	36	14	90154079	90154079	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	90154079	90154079	TTC7B	14	A	A	T	3
SERPINA4	5267	broad.mit.edu	36	14	94099875	94099875	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	94099875	94099875	SERPINA4	14	C	C	A	30
C15orf2	23742	broad.mit.edu	36	15	22472428	22472428	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	22472428	22472428	C15orf2	15	G	G	T	44
RYR3	6263	broad.mit.edu	36	15	31682691	31682691	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	31682691	31682691	RYR3	15	C	C	T	31
MTFMT	123263	broad.mit.edu	36	15	63101003	63101003	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	63101003	63101003	MTFMT	15	C	C	T	29
HEXA	3073	broad.mit.edu	36	15	70430550	70430550	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	70430550	70430550	HEXA	15	G	G	C	36
STOML1	9399	broad.mit.edu	36	15	72063456	72063456	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	72063456	72063456	STOML1	15	C	C	G	32
CIB2	10518	broad.mit.edu	36	15	76190665	76190665	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	76190665	76190665	CIB2	15	G	G	A	37
ZFAND6	54469	broad.mit.edu	36	15	78202096	78202096	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Splice_Site_SNP	SNP	78202096	78202096	ZFAND6	15	G	G	C	34
FES	2242	broad.mit.edu	36	15	89238176	89238176	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	89238176	89238176	FES	15	A	A	G	14
DNAH3	55567	broad.mit.edu	36	16	20878076	20878076	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	20878076	20878076	DNAH3	16	G	G	A	39
TMCO7	79613	broad.mit.edu	36	16	67631815	67631815	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	67631815	67631815	TMCO7	16	A	A	T	1
HYDIN	54768	broad.mit.edu	36	16	69562149	69562149	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	69562149	69562149	HYDIN	16	T	T	C	64
CNTNAP4	85445	broad.mit.edu	36	16	75044030	75044030	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	75044030	75044030	CNTNAP4	16	G	G	A	37
PKD1L2	114780	broad.mit.edu	36	16	79776673	79776673	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	79776673	79776673	PKD1L2	16	C	C	G	32
CPNE7	27132	broad.mit.edu	36	16	88178713	88178714	+	Missense_Mutation	DNP	GA	GA	TC	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	DNP	88178713	88178714	CPNE7	16	GA	GA	TC	41
SCARF1	8578	broad.mit.edu	36	17	1495264	1495264	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	1495264	1495264	SCARF1	17	A	A	T	6
TP53	7157	broad.mit.edu	36	17	7518929	7518929	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	7518929	7518929	TP53	17	A	A	C	6
CHD3	1107	broad.mit.edu	36	17	7735013	7735013	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	7735013	7735013	CHD3	17	C	C	A	28
FLJ25006	124923	broad.mit.edu	36	17	23964425	23964425	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	23964425	23964425	FLJ25006	17	T	T	A	56
EPN3	55040	broad.mit.edu	36	17	45973163	45973163	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	45973163	45973163	EPN3	17	G	G	A	37
HEATR6	63897	broad.mit.edu	36	17	55504362	55504362	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	55504362	55504362	HEATR6	17	C	C	A	25
TANC2	26115	broad.mit.edu	36	17	58771410	58771410	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	58771410	58771410	TANC2	17	G	G	A	33
SAP30BP	29115	broad.mit.edu	36	17	71210211	71210211	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	71210211	71210211	SAP30BP	17	C	C	T	17
KIAA1632	57724	broad.mit.edu	36	18	41692528	41692528	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Splice_Site_SNP	SNP	41692528	41692528	KIAA1632	18	C	C	A	18
C18orf54	162681	broad.mit.edu	36	18	50141075	50141075	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Nonsense_Mutation	SNP	50141075	50141075	C18orf54	18	C	C	A	17
ZCCHC2	54877	broad.mit.edu	36	18	58363069	58363069	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	58363069	58363069	ZCCHC2	18	C	C	G	17
TRIP10	9322	broad.mit.edu	36	19	6695700	6695700	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	6695700	6695700	TRIP10	19	G	G	A	41
ZNF791	163049	broad.mit.edu	36	19	12599844	12599844	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	12599844	12599844	ZNF791	19	A	A	C	1
ARMC6	93436	broad.mit.edu	36	19	19029264	19029264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	19029264	19029264	ARMC6	19	G	G	A	39
MLL4	9757	broad.mit.edu	36	19	40903085	40903085	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	40903085	40903085	MLL4	19	T	T	C	51
LGALS13	29124	broad.mit.edu	36	19	44787802	44787802	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	44787802	44787802	LGALS13	19	C	C	T	20
CYP2A13	1553	broad.mit.edu	36	19	46286230	46286230	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	46286230	46286230	CYP2A13	19	G	G	A	43
CIC	23152	broad.mit.edu	36	19	47490052	47490052	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	47490052	47490052	CIC	19	C	C	T	32
VASP	7408	broad.mit.edu	36	19	50713107	50713107	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	50713107	50713107	VASP	19	C	C	G	26
CABP5	56344	broad.mit.edu	36	19	53235717	53235717	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	53235717	53235717	CABP5	19	C	C	A	23
KLK2	3817	broad.mit.edu	36	19	56073550	56073550	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	56073550	56073550	KLK2	19	C	C	T	26
ZNF628	89887	broad.mit.edu	36	19	60684641	60684641	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	60684641	60684641	ZNF628	19	G	G	T	39
PEG3	5178	broad.mit.edu	36	19	62017826	62017826	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	62017826	62017826	PEG3	19	C	C	A	24
DUXA	503835	broad.mit.edu	36	19	62362451	62362451	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	62362451	62362451	DUXA	19	A	A	C	1
ZNF551	90233	broad.mit.edu	36	19	62891400	62891400	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	62891400	62891400	ZNF551	19	G	G	T	47
FSHR	2492	broad.mit.edu	36	2	49043797	49043797	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	49043797	49043797	FSHR	2	A	A	T	6
CNTNAP5	129684	broad.mit.edu	36	2	125246854	125246854	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	125246854	125246854	CNTNAP5	2	G	G	A	33
RIF1	55183	broad.mit.edu	36	2	152022643	152022643	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	152022643	152022643	RIF1	2	A	A	G	2
TTN	7273	broad.mit.edu	36	2	179152815	179152815	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	179152815	179152815	TTN	2	G	G	A	35
MYO1B	4430	broad.mit.edu	36	2	191902954	191902954	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	191902954	191902954	MYO1B	2	G	G	A	35
PLEKHM3	389072	broad.mit.edu	36	2	208550482	208550482	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Nonsense_Mutation	SNP	208550482	208550482	PLEKHM3	2	C	C	T	26
DGKD	8527	broad.mit.edu	36	2	234041940	234041940	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Splice_Site_SNP	SNP	234041940	234041940	DGKD	2	T	T	G	57
RRBP1	6238	broad.mit.edu	36	20	17570516	17570516	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	17570516	17570516	RRBP1	20	C	C	T	32
CYYR1	116159	broad.mit.edu	36	21	26762717	26762718	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	DNP	26762717	26762718	CYYR1	21	GA	GA	TT	41
MX1	4599	broad.mit.edu	36	21	41752421	41752421	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	41752421	41752421	MX1	21	C	C	A	28
C2CD2	25966	broad.mit.edu	36	21	42200838	42200838	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	42200838	42200838	C2CD2	21	C	C	T	24
CCT8L2	150160	broad.mit.edu	36	22	15452357	15452357	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	15452357	15452357	CCT8L2	22	C	C	G	18
CYTSA	23384	broad.mit.edu	36	22	23048635	23048635	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	23048635	23048635	CYTSA	22	G	G	C	33
DEPDC5	9681	broad.mit.edu	36	22	30583538	30583538	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	30583538	30583538	DEPDC5	22	A	A	G	3
EFCAB6	64800	broad.mit.edu	36	22	42399519	42399519	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Splice_Site_SNP	SNP	42399519	42399519	EFCAB6	22	C	C	A	32
SLC9A10	285335	broad.mit.edu	36	3	113370775	113370775	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	113370775	113370775	SLC9A10	3	C	C	T	27
TNFSF10	8743	broad.mit.edu	36	3	173723832	173723833	+	Missense_Mutation	DNP	CC	CC	TT	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	DNP	173723832	173723833	TNFSF10	3	CC	CC	TT	22
FAM193A	8603	broad.mit.edu	36	4	2671499	2671499	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	2671499	2671499	FAM193A	4	G	G	A	45
UGT2B4	7363	broad.mit.edu	36	4	70394026	70394026	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	70394026	70394026	UGT2B4	4	A	A	T	7
NAA15	80155	broad.mit.edu	36	4	140502514	140502514	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	140502514	140502514	NAA15	4	G	G	C	45
FAT1	2195	broad.mit.edu	36	4	187779859	187779859	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	187779859	187779859	FAT1	4	T	T	G	53
PRDM9	56979	broad.mit.edu	36	5	23558665	23558665	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	23558665	23558665	PRDM9	5	G	G	A	45
RAPGEF6	51735	broad.mit.edu	36	5	130792511	130792511	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	130792511	130792511	RAPGEF6	5	G	G	T	46
PCDHA4	56144	broad.mit.edu	36	5	140167356	140167356	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	140167356	140167356	PCDHA4	5	C	C	T	22
PCDHGB7	56099	broad.mit.edu	36	5	140778607	140778607	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	140778607	140778607	PCDHGB7	5	G	G	A	36
NHP2	55651	broad.mit.edu	36	5	177509382	177509382	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	177509382	177509382	NHP2	5	C	C	T	30
NHP2	55651	broad.mit.edu	36	5	177509445	177509445	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	177509445	177509445	NHP2	5	C	C	T	30
FLT4	2324	broad.mit.edu	36	5	179985805	179985806	+	Missense_Mutation	DNP	TG	TG	CT	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	DNP	179985805	179985806	FLT4	5	TG	TG	CT	55
NUP153	9972	broad.mit.edu	36	6	17745743	17745743	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	17745743	17745743	NUP153	6	G	G	C	36
HIST1H2BH	8345	broad.mit.edu	36	6	26360083	26360083	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	26360083	26360083	HIST1H2BH	6	G	G	A	39
ZNF187	7741	broad.mit.edu	36	6	28351974	28351974	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	28351974	28351974	ZNF187	6	G	G	A	47
HLA-E	3133	broad.mit.edu	36	6	30565660	30565660	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	30565660	30565660	HLA-E	6	G	G	T	43
VARS2	57176	broad.mit.edu	36	6	30995963	30995963	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	30995963	30995963	VARS2	6	C	C	T	20
TAPBP	6892	broad.mit.edu	36	6	33381037	33381037	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	33381037	33381037	TAPBP	6	G	G	A	42
PHF1	5252	broad.mit.edu	36	6	33490046	33490046	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	33490046	33490046	PHF1	6	G	G	A	33
PNPLA1	285848	broad.mit.edu	36	6	36370146	36370146	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	36370146	36370146	PNPLA1	6	G	G	A	41
GPR115	221393	broad.mit.edu	36	6	47790221	47790221	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Nonsense_Mutation	SNP	47790221	47790221	GPR115	6	G	G	A	44
BEND6	221336	broad.mit.edu	36	6	56965185	56965186	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	DNP	56965185	56965186	BEND6	6	GG	GG	TT	35
RIMS1	22999	broad.mit.edu	36	6	73040792	73040792	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	73040792	73040792	RIMS1	6	C	C	T	24
TXLNB	167838	broad.mit.edu	36	6	139605515	139605515	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	139605515	139605515	TXLNB	6	A	A	G	11
ELMO1	9844	broad.mit.edu	36	7	37348807	37348807	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	37348807	37348807	ELMO1	7	C	C	T	27
ZMIZ2	83637	broad.mit.edu	36	7	44762655	44762655	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	44762655	44762655	ZMIZ2	7	C	C	G	17
COBL	23242	broad.mit.edu	36	7	51120394	51120394	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	51120394	51120394	COBL	7	G	G	C	46
STAG3	10734	broad.mit.edu	36	7	99624554	99624554	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	99624554	99624554	STAG3	7	C	C	A	23
GCC1	79571	broad.mit.edu	36	7	127009804	127009804	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	127009804	127009804	GCC1	7	C	C	A	26
C7orf33	202865	broad.mit.edu	36	7	147942217	147942217	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	147942217	147942217	C7orf33	7	G	G	A	43
PLAG1	5324	broad.mit.edu	36	8	57242265	57242265	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	57242265	57242265	PLAG1	8	C	C	T	24
RGS22	26166	broad.mit.edu	36	8	101068932	101068932	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	101068932	101068932	RGS22	8	C	C	A	19
DENND3	22898	broad.mit.edu	36	8	142268269	142268269	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	142268269	142268269	DENND3	8	C	C	T	20
C9orf125	84302	broad.mit.edu	36	9	103279181	103279181	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Silent	SNP	103279181	103279181	C9orf125	9	G	G	A	35
TSC1	7248	broad.mit.edu	36	9	134766887	134766888	+	Missense_Mutation	DNP	CC	CC	TG	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	DNP	134766887	134766888	TSC1	9	CC	CC	TG	30
VAV2	7410	broad.mit.edu	36	9	135646794	135646794	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	135646794	135646794	VAV2	9	T	T	G	63
USP11	8237	broad.mit.edu	36	X	46985713	46985713	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	46985713	46985713	USP11	23	G	G	A	45
SYP	6855	broad.mit.edu	36	X	48936733	48936733	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	48936733	48936733	SYP	23	C	C	G	32
ITIH5L	347365	broad.mit.edu	36	X	54801851	54801851	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-1998-01	Broad	Missense_Mutation	SNP	54801851	54801851	ITIH5L	23	G	G	T	48
NBPF16	728936	broad.mit.edu	36	1	147019951	147019960	+	Frame_Shift_Del	DEL	AGATTATCTT	-	AGATTATCTT	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-1998-01	Broad	Frame_Shift_Del	DEL	147019951	147019960	NBPF16	1	AGATTATCTT	-	AGATTATCTT	7
IGSF9	57549	broad.mit.edu	36	1	158170866	158170877	+	In_Frame_Del	DEL	AGGGTGGATGCA	-	AGGGTGGATGCA	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-1998-01	Broad	In_Frame_Del	DEL	158170866	158170877	IGSF9	1	AGGGTGGATGCA	-	AGGGTGGATGCA	11
SPEF2	79925	broad.mit.edu	36	5	35829070	35829070	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-1998-01	Broad	Frame_Shift_Del	DEL	35829070	35829070	SPEF2	5	G	-	G	39
PLOD3	8985	broad.mit.edu	36	7	100640600	100640609	+	Frame_Shift_Del	DEL	TGGGGCAGCT	-	TGGGGCAGCT	novel	Unknown	TCGA-61-1998-01	TCGA-61-1998-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-1998-01	Broad	Frame_Shift_Del	DEL	100640600	100640609	PLOD3	7	TGGGGCAGCT	-	TGGGGCAGCT	55
