Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
HECTD3	79654	broad.mit.edu	36	1	45247932	45247932	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	45247932	45247932	HECTD3	1	T	T	C	60
MAGI3	260425	broad.mit.edu	36	1	114015900	114015900	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	114015900	114015900	MAGI3	1	G	G	A	41
KPRP	448834	broad.mit.edu	36	1	150999246	150999246	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	150999246	150999246	KPRP	1	C	C	T	28
DHX9	1660	broad.mit.edu	36	1	181079059	181079059	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	181079059	181079059	DHX9	1	T	T	G	59
OR2L13	284521	broad.mit.edu	36	1	246329995	246329995	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	246329995	246329995	OR2L13	1	G	G	A	43
PPYR1	5540	broad.mit.edu	36	10	46507280	46507280	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Nonsense_Mutation	SNP	46507280	46507280	PPYR1	10	G	G	A	47
C10orf118	55088	broad.mit.edu	36	10	115907399	115907399	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	115907399	115907399	C10orf118	10	C	C	T	28
OR52E4	390081	broad.mit.edu	36	11	5862716	5862716	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	5862716	5862716	OR52E4	11	T	T	C	56
NEU3	10825	broad.mit.edu	36	11	74383296	74383296	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	74383296	74383296	NEU3	11	C	C	T	32
AEBP2	121536	broad.mit.edu	36	12	19484524	19484524	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	19484524	19484524	AEBP2	12	G	G	A	33
FAM70B	348013	broad.mit.edu	36	13	113599140	113599140	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	113599140	113599140	FAM70B	13	G	G	A	43
AHNAK2	113146	broad.mit.edu	36	14	104483894	104483894	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	104483894	104483894	AHNAK2	14	A	A	C	8
VPS18	57617	broad.mit.edu	36	15	38978947	38978947	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	38978947	38978947	VPS18	15	C	C	T	26
ARNT2	9915	broad.mit.edu	36	15	78587555	78587555	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	78587555	78587555	ARNT2	15	G	G	A	39
ZC3H7A	29066	broad.mit.edu	36	16	11765003	11765003	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	11765003	11765003	ZC3H7A	16	T	T	C	51
FBXL19	54620	broad.mit.edu	36	16	30865665	30865665	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	30865665	30865665	FBXL19	16	G	G	A	38
FAM83G	644815	broad.mit.edu	36	17	18815469	18815469	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	18815469	18815469	FAM83G	17	C	C	T	23
UNC45B	146862	broad.mit.edu	36	17	30499563	30499563	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	30499563	30499563	UNC45B	17	G	G	A	39
DDX5	1655	broad.mit.edu	36	17	59929591	59929591	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	59929591	59929591	DDX5	17	T	T	C	49
DSG3	1830	broad.mit.edu	36	18	27309913	27309913	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	27309913	27309913	DSG3	18	T	T	G	59
TPM4	7171	broad.mit.edu	36	19	16039452	16039452	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	16039452	16039452	TPM4	19	G	G	A	33
CCDC85A	114800	broad.mit.edu	36	2	56453098	56453098	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	56453098	56453098	CCDC85A	2	G	G	A	37
TET3	200424	broad.mit.edu	36	2	74182800	74182800	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	74182800	74182800	TET3	2	C	C	T	23
FAM123C	205147	broad.mit.edu	36	2	131238667	131238667	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	131238667	131238667	FAM123C	2	C	C	T	26
DGKD	8527	broad.mit.edu	36	2	234031776	234031776	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	234031776	234031776	DGKD	2	C	C	T	31
ZNF831	128611	broad.mit.edu	36	20	57215425	57215425	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Nonsense_Mutation	SNP	57215425	57215425	ZNF831	20	C	C	T	27
KBTBD8	84541	broad.mit.edu	36	3	67136980	67136980	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	67136980	67136980	KBTBD8	3	A	A	G	3
TNPO1	3842	broad.mit.edu	36	5	72204229	72204229	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	72204229	72204229	TNPO1	5	G	G	A	38
ETF1	2107	broad.mit.edu	36	5	137882296	137882296	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	137882296	137882296	ETF1	5	G	G	T	45
PCDHB16	57717	broad.mit.edu	36	5	140544190	140544190	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	140544190	140544190	PCDHB16	5	G	G	A	46
KCTD16	57528	broad.mit.edu	36	5	143833771	143833771	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	143833771	143833771	KCTD16	5	G	G	A	33
ABCC10	89845	broad.mit.edu	36	6	43523456	43523456	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	43523456	43523456	ABCC10	6	G	G	A	40
TBX18	9096	broad.mit.edu	36	6	85529070	85529070	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Silent	SNP	85529070	85529070	TBX18	6	C	C	T	27
ANKRD6	22881	broad.mit.edu	36	6	90380262	90380262	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	90380262	90380262	ANKRD6	6	C	C	T	27
ETV1	2115	broad.mit.edu	36	7	13937754	13937754	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	13937754	13937754	ETV1	7	G	G	A	43
DGKB	1607	broad.mit.edu	36	7	14613624	14613624	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	14613624	14613624	DGKB	7	G	G	C	37
CRCP	27297	broad.mit.edu	36	7	65217335	65217335	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	65217335	65217335	CRCP	7	G	G	A	36
BAZ1B	9031	broad.mit.edu	36	7	72522647	72522647	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	72522647	72522647	BAZ1B	7	C	C	T	27
PRKDC	5591	broad.mit.edu	36	8	48896744	48896744	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	48896744	48896744	PRKDC	8	T	T	C	61
TRPA1	8989	broad.mit.edu	36	8	73134192	73134192	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	73134192	73134192	TRPA1	8	T	T	G	49
KIAA1161	57462	broad.mit.edu	36	9	34361740	34361740	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2101-01	Broad	Missense_Mutation	SNP	34361740	34361740	KIAA1161	9	C	C	T	27
TP53	7157	broad.mit.edu	36	17	7520148	7520157	+	Frame_Shift_Del	DEL	GGCTGGTGCA	-	-	novel	Unknown	TCGA-61-2101-01	TCGA-61-2101-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2101-01	Broad	Frame_Shift_Del	DEL	7520148	7520157	TP53	17	GGCTGGTGCA	-	-	43
