Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CAPZB	832	broad.mit.edu	36	1	19618803	19618803	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	19618803	19618803	CAPZB	1	T	T	A	58
NT5C1A	84618	broad.mit.edu	36	1	39899461	39899461	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	39899461	39899461	NT5C1A	1	C	C	T	25
C1orf194	127003	broad.mit.edu	36	1	109452069	109452069	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	109452069	109452069	C1orf194	1	G	G	A	39
SPAG17	200162	broad.mit.edu	36	1	118425746	118425746	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	118425746	118425746	SPAG17	1	A	A	C	1
ARHGEF11	9826	broad.mit.edu	36	1	155184735	155184735	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	155184735	155184735	ARHGEF11	1	C	C	G	24
POU2F1	5451	broad.mit.edu	36	1	165610021	165610021	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	165610021	165610021	POU2F1	1	A	A	T	7
CAMSAP1L1	23271	broad.mit.edu	36	1	199085868	199085868	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	199085868	199085868	CAMSAP1L1	1	C	C	A	22
CRTAC1	55118	broad.mit.edu	36	10	99651312	99651312	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	99651312	99651312	CRTAC1	10	C	C	T	24
C10orf119	79892	broad.mit.edu	36	10	121602679	121602679	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	121602679	121602679	C10orf119	10	G	G	C	44
CHID1	66005	broad.mit.edu	36	11	890012	890012	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	890012	890012	CHID1	11	C	C	G	18
C11orf42	160298	broad.mit.edu	36	11	6188834	6188834	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	6188834	6188834	C11orf42	11	G	G	A	37
OR5D16	390144	broad.mit.edu	36	11	55363540	55363540	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	55363540	55363540	OR5D16	11	A	A	T	6
OR5A1	219982	broad.mit.edu	36	11	58967856	58967856	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	58967856	58967856	OR5A1	11	G	G	A	40
VWCE	220001	broad.mit.edu	36	11	60793047	60793047	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	60793047	60793047	VWCE	11	C	C	T	25
DYNC2H1	79659	broad.mit.edu	36	11	102844528	102844528	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	102844528	102844528	DYNC2H1	11	T	T	A	50
TAOK3	51347	broad.mit.edu	36	12	117121365	117121365	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	117121365	117121365	TAOK3	12	G	G	T	46
MNAT1	4331	broad.mit.edu	36	14	60348548	60348548	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	60348548	60348548	MNAT1	14	C	C	G	20
C15orf41	84529	broad.mit.edu	36	15	34659362	34659362	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	34659362	34659362	C15orf41	15	G	G	C	45
EIF2AK4	440275	broad.mit.edu	36	15	38069855	38069855	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	38069855	38069855	EIF2AK4	15	C	C	A	18
TBC1D21	161514	broad.mit.edu	36	15	71967843	71967843	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	71967843	71967843	TBC1D21	15	A	A	T	10
SIN3A	25942	broad.mit.edu	36	15	73502113	73502113	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	73502113	73502113	SIN3A	15	C	C	G	21
IRF8	3394	broad.mit.edu	36	16	84494231	84494231	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	84494231	84494231	IRF8	16	C	C	T	23
ANKRD11	29123	broad.mit.edu	36	16	87877556	87877556	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	87877556	87877556	ANKRD11	16	C	C	T	22
ANKFY1	51479	broad.mit.edu	36	17	4059983	4059983	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	4059983	4059983	ANKFY1	17	T	T	A	56
TP53	7157	broad.mit.edu	36	17	7519168	7519168	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	7519168	7519168	TP53	17	A	A	T	15
GLP2R	9340	broad.mit.edu	36	17	9701481	9701481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	9701481	9701481	GLP2R	17	C	C	T	27
DNAH17	8632	broad.mit.edu	36	17	74022601	74022601	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	74022601	74022601	DNAH17	17	C	C	A	18
FHOD3	80206	broad.mit.edu	36	18	32552396	32552396	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	32552396	32552396	FHOD3	18	C	C	G	22
FHOD3	80206	broad.mit.edu	36	18	32578131	32578131	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	32578131	32578131	FHOD3	18	G	G	A	39
C19orf47	126526	broad.mit.edu	36	19	45520010	45520010	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	45520010	45520010	C19orf47	19	C	C	A	32
SHANK1	50944	broad.mit.edu	36	19	55907073	55907073	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	55907073	55907073	SHANK1	19	C	C	A	17
DPP10	57628	broad.mit.edu	36	2	116227231	116227231	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	116227231	116227231	DPP10	2	T	T	A	50
CASS4	57091	broad.mit.edu	36	20	54454391	54454391	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	54454391	54454391	CASS4	20	G	G	A	39
ADAMTS5	11096	broad.mit.edu	36	21	27227130	27227130	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	27227130	27227130	ADAMTS5	21	A	A	G	11
DSCAM	1826	broad.mit.edu	36	21	40605882	40605882	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	40605882	40605882	DSCAM	21	G	G	C	45
FBLN2	2199	broad.mit.edu	36	3	13636311	13636311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	13636311	13636311	FBLN2	3	G	G	A	42
CSPG5	10675	broad.mit.edu	36	3	47593426	47593426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	47593426	47593426	CSPG5	3	C	C	T	23
RAD54L2	23132	broad.mit.edu	36	3	51639823	51639823	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	51639823	51639823	RAD54L2	3	G	G	T	48
ARL13B	200894	broad.mit.edu	36	3	95205197	95205197	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	95205197	95205197	ARL13B	3	C	C	T	18
MCF2L2	23101	broad.mit.edu	36	3	184500672	184500672	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	184500672	184500672	MCF2L2	3	G	G	A	35
EPHA5	2044	broad.mit.edu	36	4	66150299	66150299	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	66150299	66150299	EPHA5	4	C	C	T	21
MUC7	4589	broad.mit.edu	36	4	71381940	71381940	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	71381940	71381940	MUC7	4	C	C	A	30
PCDHGA3	56112	broad.mit.edu	36	5	140705711	140705711	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	140705711	140705711	PCDHGA3	5	G	G	T	40
SH3TC2	79628	broad.mit.edu	36	5	148388284	148388284	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	148388284	148388284	SH3TC2	5	C	C	T	18
DEFB112	245915	broad.mit.edu	36	6	50119434	50119434	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	50119434	50119434	DEFB112	6	T	T	A	56
C6orf142	90523	broad.mit.edu	36	6	54203558	54203558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	54203558	54203558	C6orf142	6	C	C	G	17
DOPEY1	23033	broad.mit.edu	36	6	83934367	83934367	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	83934367	83934367	DOPEY1	6	T	T	G	50
AHR	196	broad.mit.edu	36	7	17346021	17346021	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	17346021	17346021	AHR	7	C	C	G	29
NPC1L1	29881	broad.mit.edu	36	7	44546314	44546314	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	44546314	44546314	NPC1L1	7	A	A	G	12
MLXIPL	51085	broad.mit.edu	36	7	72648536	72648536	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Silent	SNP	72648536	72648536	MLXIPL	7	G	G	A	39
TRAPPC9	83696	broad.mit.edu	36	8	141103289	141103289	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	141103289	141103289	TRAPPC9	8	G	G	C	33
SMU1	55234	broad.mit.edu	36	9	33050569	33050569	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Nonsense_Mutation	SNP	33050569	33050569	SMU1	9	G	G	T	45
C9orf43	257169	broad.mit.edu	36	9	115215624	115215624	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2104-01	Broad	Missense_Mutation	SNP	115215624	115215624	C9orf43	9	C	C	G	19
NEB	4703	broad.mit.edu	36	2	152110759	152110760	+	Splice_Site_Ins	INS	-	T	-	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2104-01	Broad	Splice_Site_Ins	INS	152110759	152110760	NEB	2	-	T	-	20
GIGYF2	26058	broad.mit.edu	36	2	233420471	233420473	+	In_Frame_Del	DEL	ACA	-	ACA	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2104-01	Broad	In_Frame_Del	DEL	233420471	233420473	GIGYF2	2	ACA	-	ACA	6
SORBS2	8470	broad.mit.edu	36	4	186773304	186773304	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-61-2104-01	TCGA-61-2104-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2104-01	Broad	Frame_Shift_Del	DEL	186773304	186773304	SORBS2	4	C	-	C	20
