Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	i_TCGAscape_Amplification_Peaks	i_TCGAscape_Deletion_Peaks	DrugBank	i_ACHILLES_Top_Genes	i_CCLE_ONCOMAP_overlapping_mutations	i_CCLE_ONCOMAP_total_mutations_in_gene	i_CCLE_SEQ_overlapping_mutations	i_CCLE_SEQ_total_mutations_in_gene	MUTSIG_Significant_Genes	OREGANNO_ID	OREGANNO_Values	i_tumor_f	i_init_t_lod	i_t_lod_fstar	i_t_alt_count	i_t_ref_count	i_normal_best_gt	i_failure_reasons	i_judgement	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	dataset	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context_orig	context65	gene_name	newbase	categ	categ_ignoring_null_categ
ITGA8	8516	broad.mit.edu	36	10	15689783	15689783	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr10:15689783G>A	uc001ioc.1	-	c.1663C>T	c.(1663-1665)CGG>TGG	p.R555W		NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8	555	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6														0.333333	68.651741	70.495918	25	50	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	15689783	15689783	8186	10	G	A	A	40	40	ITGA8	A	1	1
PTEN	5728	broad.mit.edu	36	10	89710630	89710630	+	Splice_Site_SNP	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr10:89710630G>A	uc001kfb.1	+	c.802_splice	c.e9-1	p.D268_splice		NM_000314	NP_000305			phosphatase and tensin homolog						apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of focal adhesion assembly|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of cyclin-dependent protein kinase activity|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.M264fs*8(2)|p.?(2)		endometrium(831)|central_nervous_system(654)|skin(119)|haematopoietic_and_lymphoid_tissue(101)|prostate(97)|large_intestine(90)|breast(67)|lung(63)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(21)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(12)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2308		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)						31		264	TCGA GBM(2;<1E-8)|TSP Lung(26;0.18)			0.444444	12.600073	12.624038	4	5	GG		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)	Splice_Site_SNP	SNP	89710630	89710630	13192	10	G	A	A	35	35	PTEN	A	5	2
MMP7	4316	broad.mit.edu	36	11	101903801	101903801	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr11:101903801C>T	uc001phb.1	-	c.232G>A	c.(232-234)GTC>ATC	p.V78I	MMP7_uc009yxd.1_Missense_Mutation_p.V78I	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	78					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)												0.245614	35.423153	38.781291	14	43	CC		KEEP	---	---	---	---	capture	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)	Missense_Mutation	SNP	101903801	101903801	10058	11	C	T	T	19	19	MMP7	T	1	1
BTBD10	84280	broad.mit.edu	36	11	13397696	13397696	+	Silent	SNP	T	C	C			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr11:13397696T>C	uc001mkz.1	-	c.471A>G	c.(469-471)AAA>AAG	p.K157K	BTBD10_uc001mla.1_Silent_p.K141K|BTBD10_uc009ygn.1_Non-coding_Transcript|BTBD10_uc009ygo.1_Silent_p.K109K	NM_032320	NP_115696	Q9BSF8	BTBDA_HUMAN	K+ channel tetramerization protein	157						nucleus					0														0.296512	158.174016	164.533693	51	121	TT		KEEP	---	---	---	---	capture		Epithelial(150;0.0214)	Silent	SNP	13397696	13397696	1570	11	T	C	C	56	56	BTBD10	C	4	4
OR52E4	390081	broad.mit.edu	36	11	5862884	5862884	+	Silent	SNP	A	T	T			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr11:5862884A>T	uc001mca.1	+	c.786A>T	c.(784-786)ACA>ACT	p.T262T	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)												0.219048	53.66719	61.306129	23	82	AA		KEEP	---	---	---	---	capture		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Silent	SNP	5862884	5862884	11526	11	A	T	T	6	6	OR52E4	T	4	4
PLEKHA5	54477	broad.mit.edu	36	12	19327564	19327564	+	Missense_Mutation	SNP	C	G	G			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:19327564C>G	uc001rea.1	+	c.1379C>G	c.(1378-1380)ACA>AGA	p.T460R	PLEKHA5_uc001reb.1_Missense_Mutation_p.T460R|PLEKHA5_uc009zin.1_Missense_Mutation_p.T218R|PLEKHA5_uc001rec.1_Missense_Mutation_p.T148R	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	460							1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					Pancreas(196;329 2193 11246 14234 19524)				873				0.294118	31.646253	32.930294	10	24	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	19327564	19327564	12485	12	C	G	G	17	17	PLEKHA5	G	3	3
TEAD4	7004	broad.mit.edu	36	12	2991638	2991638	+	Silent	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:2991638C>T	uc001qlo.1	+	c.333C>T	c.(331-333)CGC>CGT	p.R111R	TEAD4_uc001qll.1_Silent_p.R38R|TEAD4_uc001qlm.1_Silent_p.R111R|TEAD4_uc001qln.1_5'UTR	NM_201443	NP_958851	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 3	111					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|RNA polymerase II transcription factor activity|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)													0.153846	6.482797	9.463563	4	22	CC		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)		Silent	SNP	2991638	2991638	16268	12	C	T	T	27	27	TEAD4	T	1	1
MAP3K12	7786	broad.mit.edu	36	12	52164058	52164058	+	Missense_Mutation	SNP	T	C	C			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr12:52164058T>C	uc001sdn.1	-	c.1262A>G	c.(1261-1263)GAA>GGA	p.E421G	MAP3K12_uc001sdm.1_Missense_Mutation_p.E388G	NM_006301	NP_006292	Q12852	M3K12_HUMAN	mitogen-activated protein kinase kinase kinase	388					histone phosphorylation|JNK cascade|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation	cytosol|membrane fraction|plasma membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			lung(2)|ovary(1)|breast(1)	4										178				0.166667	7.59817	10.727022	5	25	TT		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	52164058	52164058	9629	12	T	C	C	62	62	MAP3K12	C	4	4
CYP27B1	1594	broad.mit.edu	36	12	56444944	56444944	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr12:56444944C>T	uc001spz.1	-	c.823G>A	c.(823-825)GCA>ACA	p.A275T	CYP27B1_uc001sqa.1_Missense_Mutation_p.A40T|CYP27B1_uc001sqb.1_Missense_Mutation_p.G155D|CYP27B1_uc001sqc.1_Missense_Mutation_p.G155D	NM_000785	NP_000776	O15528	CP27B_HUMAN	cytochrome P450, family 27, subfamily B,	275					bone mineralization|calcium ion homeostasis|calcium ion transport|decidualization|G1 to G0 transition|hormone biosynthetic process|negative regulation of calcidiol 1-monooxygenase activity|negative regulation of cell growth|negative regulation of cell proliferation|oxidation-reduction process|positive regulation of keratinocyte differentiation|positive regulation of vitamin D 24-hydroxylase activity|positive regulation of vitamin D receptor signaling pathway|regulation of bone mineralization|response to estrogen stimulus|response to interferon-gamma|response to lipopolysaccharide|response to tumor necrosis factor|response to vitamin D|vitamin D biosynthetic process|xenobiotic metabolic process	mitochondrial outer membrane	calcidiol 1-monooxygenase activity|electron carrier activity|heme binding			central_nervous_system(3)	3	all_cancers(7;8.09e-80)|Lung NSC(6;2.26e-27)|all_lung(6;1.99e-25)|all_epithelial(6;3.62e-18)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)				Calcidiol(DB00146)|Calcitriol(DB00136)|Ergocalciferol(DB00153)					101				0.236364	28.047289	31.543525	13	42	CC		KEEP	---	---	---	---	capture	GBM - Glioblastoma multiforme(5;1.97e-113)|all cancers(5;1.54e-78)|BRCA - Breast invasive adenocarcinoma(9;0.0294)		Missense_Mutation	SNP	56444944	56444944	4324	12	C	T	T	26	26	CYP27B1	T	2	2
ATP8A2	51761	broad.mit.edu	36	13	25241355	25241355	+	Silent	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr13:25241355C>T	uc001uqk.1	+	c.2556C>T	c.(2554-2556)TAC>TAT	p.Y852Y	ATP8A2_uc010aaj.1_Silent_p.Y402Y	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	812	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)	3		Breast(139;0.0201)|Lung SC(185;0.0225)												0.296296	42.063629	44.078547	16	38	CC		KEEP	---	---	---	---	capture		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)	Silent	SNP	25241355	25241355	1212	13	C	T	T	19	19	ATP8A2	T	1	1
ZNF219	51222	broad.mit.edu	36	14	20630860	20630860	+	Missense_Mutation	SNP	T	G	G			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr14:20630860T>G	uc001vzr.2	-	c.436A>C	c.(436-438)ACC>CCC	p.T146P	ZNF219_uc001vzs.2_Missense_Mutation_p.T146P|ZNF219_uc010aik.1_Missense_Mutation_p.T146P	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	146					regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription repressor activity|zinc ion binding				0	all_cancers(95;0.00185)											OREG0022565	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0.466667	9.780995	9.805952	7	8	TT		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)	Missense_Mutation	SNP	20630860	20630860	18364	14	T	G	G	59	59	ZNF219	G	4	4
SEMA6D	80031	broad.mit.edu	36	15	45841203	45841203	+	Silent	SNP	A	G	G			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr15:45841203A>G	uc010bek.1	+	c.501A>G	c.(499-501)CCA>CCG	p.P167P	SEMA6D_uc001zvw.1_Silent_p.P167P|SEMA6D_uc001zvx.1_Silent_p.P167P|SEMA6D_uc001zvy.1_Silent_p.P167P|SEMA6D_uc001zvz.1_Silent_p.P167P|SEMA6D_uc001zwa.1_Silent_p.P167P|SEMA6D_uc001zwb.1_Silent_p.P167P|SEMA6D_uc001zwc.1_Silent_p.P167P	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	167	Sema.|Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			breast(1)	1		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)												0.309524	77.253619	79.949919	26	58	AA		KEEP	---	---	---	---	capture		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)	Silent	SNP	45841203	45841203	14528	15	A	G	G	8	8	SEMA6D	G	4	4
ITGAX	3687	broad.mit.edu	36	16	31291249	31291249	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr16:31291249C>T	uc002ebt.2	+	c.2210C>T	c.(2209-2211)ACG>ATG	p.T737M	ITGAX_uc002ebu.1_Missense_Mutation_p.T737M	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	737	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4														0.268657	45.749399	48.967723	18	49	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	31291249	31291249	8193	16	C	T	T	19	19	ITGAX	T	1	1
SPAG5	10615	broad.mit.edu	36	17	23943763	23943763	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr17:23943763G>A	uc002hbq.1	-	c.626C>T	c.(625-627)CCC>CTC	p.P209L		NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	209					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)													0.155172	17.030812	23.629786	9	49	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	23943763	23943763	15484	17	G	A	A	43	43	SPAG5	A	2	2
COG1	9382	broad.mit.edu	36	17	68714524	68714524	+	Missense_Mutation	SNP	T	C	C			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr17:68714524T>C	uc002jjg.1	+	c.2702T>C	c.(2701-2703)ATC>ACC	p.I901T	COG1_uc002jjf.1_Missense_Mutation_p.I901T|COG1_uc002jjh.1_Missense_Mutation_p.I901T	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	901					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1														0.315789	9.685626	10.23831	6	13	TT		KEEP	---	---	---	---	capture	LUSC - Lung squamous cell carcinoma(166;0.197)		Missense_Mutation	SNP	68714524	68714524	3795	17	T	C	C	50	50	COG1	C	4	4
SIGLEC14	100049587	broad.mit.edu	36	19	56840898	56840898	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr19:56840898G>A	uc002pxf.2	-	c.649C>T	c.(649-651)CGC>TGC	p.R217C		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14	217	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)												0.266667	20.386742	21.862016	8	22	GG		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)	Missense_Mutation	SNP	56840898	56840898	14804	19	G	A	A	40	40	SIGLEC14	A	1	1
NLRP5	126206	broad.mit.edu	36	19	61244164	61244164	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:61244164C>T	uc002qmj.1	+	c.2851C>T	c.(2851-2853)CGG>TGG	p.R951W	NLRP5_uc002qmi.1_Missense_Mutation_p.R932W	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	951	LRR 8.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)	6		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)												0.318841	64.826373	66.838444	22	47	CC		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(193;0.0326)	Missense_Mutation	SNP	61244164	61244164	10883	19	C	T	T	23	23	NLRP5	T	1	1
ADAMTS10	81794	broad.mit.edu	36	19	8567947	8567947	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr19:8567947C>T	uc002mkj.1	-	c.964G>A	c.(964-966)GTG>ATG	p.V322M	ADAMTS10_uc002mkk.1_De_novo_Start_InFrame	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	322	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(1)	3														0.238095	33.692221	37.641769	15	48	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	8567947	8567947	257	19	C	T	T	19	19	ADAMTS10	T	1	1
MNDA	4332	broad.mit.edu	36	1	157082152	157082152	+	Missense_Mutation	SNP	C	A	A			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:157082152C>A	uc001fsz.1	+	c.722C>A	c.(721-723)GCC>GAC	p.A241D		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	241	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)	2	all_hematologic(112;0.0378)													0.2	17.576385	20.925354	8	32	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	157082152	157082152	10067	1	C	A	A	26	26	MNDA	A	3	3
ASPM	259266	broad.mit.edu	36	1	195326785	195326785	+	Nonsense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:195326785G>A	uc001gtu.1	-	c.9454C>T	c.(9454-9456)CGA>TGA	p.R3152*	ASPM_uc001gtv.1_Nonsense_Mutation_p.R1567*|ASPM_uc001gtw.2_Nonsense_Mutation_p.R1000*	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	3152					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6														0.4	48.691091	49.041156	16	24	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	195326785	195326785	1075	1	G	A	A	37	37	ASPM	A	5	1
LHX9	56956	broad.mit.edu	36	1	196157233	196157233	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr1:196157233C>T	uc001guk.1	+	c.554C>T	c.(553-555)GCC>GTC	p.A185V	LHX9_uc001gui.1_Missense_Mutation_p.A176V|LHX9_uc001guj.1_Missense_Mutation_p.A191V	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	185	LIM zinc-binding 2.				regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulator activity|zinc ion binding			ovary(1)	1														0.230769	14.836454	16.563493	6	20	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	196157233	196157233	9103	1	C	T	T	26	26	LHX9	T	2	2
CYP4A11	1579	broad.mit.edu	36	1	47168421	47168421	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr1:47168421G>A	uc001cqp.2	-	c.1513C>T	c.(1513-1515)CGT>TGT	p.R505C		NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	505			NGIHLRLRRLPNPCEDKDQL -> MESTCVSGGSLTLVKTR TSFEGLHLPSCLPDPRFCPLPVCPYPVFCLPTFPSSHLPAV PQSACPSLSHLSPGLPTCLSTCLLPTCISCWEKS (in CYP4A11V).		long-chain fatty acid metabolic process|oxidation-reduction process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)	2					NADH(DB00157)									0.195652	18.750594	22.721731	9	37	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	47168421	47168421	4348	1	G	A	A	38	38	CYP4A11	A	1	1
ELTD1	64123	broad.mit.edu	36	1	79177461	79177461	+	Missense_Mutation	SNP	T	A	A			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr1:79177461T>A	uc001diq.2	-	c.396A>T	c.(394-396)AAA>AAT	p.K132N		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	132	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)	1														0.277778	13.966945	14.766878	5	13	TT		KEEP	---	---	---	---	capture		COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)	Missense_Mutation	SNP	79177461	79177461	5276	1	T	A	A	56	56	ELTD1	A	4	4
MYBL2	4605	broad.mit.edu	36	20	41743895	41743895	+	Missense_Mutation	SNP	G	C	C			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr20:41743895G>C	uc002xlb.1	+	c.172G>C	c.(172-174)GCC>CCC	p.A58P	MYBL2_uc002xla.1_Missense_Mutation_p.A58P	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	58	H-T-H motif (By similarity).|HTH myb-type 1.				regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)								380				0.263158	8.07595	9.125814	5	14	GG		KEEP	---	---	---	---	capture	COAD - Colon adenocarcinoma(18;0.0031)		Missense_Mutation	SNP	41743895	41743895	10405	20	G	C	C	42	42	MYBL2	C	3	3
TSHZ2	128553	broad.mit.edu	36	20	51304374	51304374	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr20:51304374G>A	uc002xwo.2	+	c.970G>A	c.(970-972)GTT>ATT	p.V324I		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	324					multicellular organismal development|regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4														0.196429	23.893837	28.702016	11	45	GG		KEEP	---	---	---	---	capture	STAD - Stomach adenocarcinoma(23;0.1)		Missense_Mutation	SNP	51304374	51304374	17175	20	G	A	A	40	40	TSHZ2	A	1	1
SIM2	6493	broad.mit.edu	36	21	37014002	37014002	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr21:37014002C>T	uc002yvr.1	+	c.359C>T	c.(358-360)ACG>ATG	p.T120M	SIM2_uc002yvq.1_Missense_Mutation_p.T120M	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	120	PAS 1.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1														0.315789	31.58681	32.733522	12	26	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	37014002	37014002	14819	21	C	T	T	19	19	SIM2	T	1	1
GCAT	23464	broad.mit.edu	36	22	36541099	36541099	+	Silent	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr22:36541099G>A	uc003aua.1	+	c.675G>A	c.(673-675)GTG>GTA	p.V225V	GCAT_uc003atz.1_Silent_p.V199V	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor	199					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)									0.162162	11.626662	15.641939	6	31	GG		KEEP	---	---	---	---	capture			Silent	SNP	36541099	36541099	6550	22	G	A	A	47	47	GCAT	A	2	2
PQLC3	130814	broad.mit.edu	36	2	11218087	11218087	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:11218087C>T	uc002rbc.1	+	c.188C>T	c.(187-189)CCG>CTG	p.P63L		NM_152391	NP_689604	Q8N755	PQLC3_HUMAN	PQ loop repeat containing 3	63						integral to membrane					0	all_hematologic(175;0.0797)|Acute lymphoblastic leukemia(172;0.155)													0.189873	32.579897	39.684832	15	64	CC		KEEP	---	---	---	---	capture		Epithelial(75;0.0978)|OV - Ovarian serous cystadenocarcinoma(76;0.132)	Missense_Mutation	SNP	11218087	11218087	12856	2	C	T	T	23	23	PQLC3	T	1	1
THSD7B	80731	broad.mit.edu	36	2	137530681	137530681	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:137530681C>T	uc002tva.1	+	c.268C>T	c.(268-270)CGC>TGC	p.R90C	THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7														0.4	35.795641	36.057451	12	18	CC		KEEP	---	---	---	---	capture		BRCA - Breast invasive adenocarcinoma(221;0.19)	Missense_Mutation	SNP	137530681	137530681	16408	2	C	T	T	31	31	THSD7B	T	1	1
SCN7A	6332	broad.mit.edu	36	2	166971113	166971113	+	Missense_Mutation	SNP	C	A	A			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr2:166971113C>A	uc002udu.1	-	c.4272G>T	c.(4270-4272)ATG>ATT	p.M1424I		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1424					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1														0.136364	28.779383	45.663867	18	114	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	166971113	166971113	14405	2	C	A	A	25	25	SCN7A	A	3	3
PLEKHA3	65977	broad.mit.edu	36	2	179074061	179074061	+	Silent	SNP	A	T	T			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr2:179074061A>T	uc002umn.1	+	c.687A>T	c.(685-687)GTA>GTT	p.V229V		NM_019091	NP_061964	Q9HB20	PKHA3_HUMAN	pleckstrin homology domain containing, family A	229						cytoplasm|membrane				ovary(1)|kidney(1)	2														0.295082	51.232373	53.520322	18	43	AA		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.0266)|all cancers(119;0.0865)		Silent	SNP	179074061	179074061	12483	2	A	T	T	16	16	PLEKHA3	T	4	4
SPATS2L	26010	broad.mit.edu	36	2	201012166	201012166	+	Silent	SNP	A	C	C			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr2:201012166A>C	uc002uvn.2	+	c.522A>C	c.(520-522)TCA>TCC	p.S174S	SPATS2L_uc010fst.1_Silent_p.S174S|SPATS2L_uc002uvo.2_Silent_p.S114S|SPATS2L_uc002uvp.2_Silent_p.S174S|SPATS2L_uc002uvq.2_Intron|SPATS2L_uc002uvr.2_Silent_p.S174S	NM_015535	NP_056350	Q9NUQ6	SPS2L_HUMAN	SPATS2-like protein isoform a	174										ovary(2)|pancreas(1)	3														0.212766	22.218535	25.810364	10	37	AA		KEEP	---	---	---	---	capture			Silent	SNP	201012166	201012166	15530	2	A	C	C	7	7	SPATS2L	C	4	4
UGT1A6	54578	broad.mit.edu	36	2	234267066	234267066	+	Missense_Mutation	SNP	T	G	G			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr2:234267066T>G	uc002vuv.2	+	c.677T>G	c.(676-678)TTT>TGT	p.F226C	UGT1A8_uc002vup.1_Intron|UGT1A10_uc002vuq.2_Intron|UGT1A10_uc002vur.1_Intron|UGT1A9_uc002vus.1_Intron|UGT1A7_uc002vut.1_Intron|UGT1A6_uc002vuu.1_Intron	NM_001072	NP_001063	P19224	UD16_HUMAN	UDP glycosyltransferase 1 family, polypeptide A6	226					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity				0		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)												0.185897	73.084608	87.506205	29	127	TT		KEEP	---	---	---	---	capture		Epithelial(121;5.86e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000384)|Lung(119;0.00306)|LUSC - Lung squamous cell carcinoma(224;0.00702)	Missense_Mutation	SNP	234267066	234267066	17507	2	T	G	G	64	64	UGT1A6	G	4	4
ADRA2B	151	broad.mit.edu	36	2	96144377	96144377	+	Nonsense_Mutation	SNP	G	T	T			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr2:96144377G>T	uc002svi.1	-	c.1248C>A	c.(1246-1248)TAC>TAA	p.Y416*		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	416	Helical; Name=7; (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)									0.285714	10.519604	11.401515	6	15	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	96144377	96144377	339	2	G	T	T	36	36	ADRA2B	T	5	3
CLSTN2	64084	broad.mit.edu	36	3	141758158	141758158	+	Silent	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr3:141758158G>A	uc003etn.1	+	c.1788G>A	c.(1786-1788)GCG>GCA	p.A596A	CLSTN2_uc003etm.1_Silent_p.A596A	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2	596	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						GBM(45;858 913 3709 36904 37282)								0.222222	25.429367	28.620932	10	35	GG		KEEP	---	---	---	---	capture			Silent	SNP	141758158	141758158	3700	3	G	A	A	39	39	CLSTN2	A	1	1
GRK7	131890	broad.mit.edu	36	3	142982148	142982148	+	Silent	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr3:142982148G>A	uc003euf.1	+	c.855G>A	c.(853-855)ACG>ACA	p.T285T		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7	285	Protein kinase.				protein phosphorylation|visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|ovary(1)|skin(1)	4										174				0.333333	37.13445	38.168452	14	28	GG		KEEP	---	---	---	---	capture			Silent	SNP	142982148	142982148	7073	3	G	A	A	38	38	GRK7	A	1	1
TPRG1	285386	broad.mit.edu	36	3	190521238	190521238	+	Missense_Mutation	SNP	A	T	T			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr3:190521238A>T	uc003frv.1	+	c.763A>T	c.(763-765)ATG>TTG	p.M255L	TPRG1_uc003frw.1_Missense_Mutation_p.M255L	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	255											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)												0.166667	9.755626	12.917104	5	25	AA		KEEP	---	---	---	---	capture	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)	Missense_Mutation	SNP	190521238	190521238	16962	3	A	T	T	12	12	TPRG1	T	4	4
AGXT2L1	64850	broad.mit.edu	36	4	109887041	109887041	+	Silent	SNP	T	C	C			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr4:109887041T>C	uc003hzc.1	-	c.1266A>G	c.(1264-1266)GCA>GCG	p.A422A	AGXT2L1_uc010imc.1_Silent_p.A416A	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	422					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1														0.282051	33.30973	34.973372	11	28	TT		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(123;0.000281)	Silent	SNP	109887041	109887041	409	4	T	C	C	63	63	AGXT2L1	C	4	4
FRG1	2483	broad.mit.edu	36	4	191115571	191115571	+	Missense_Mutation	SNP	A	G	G			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr4:191115571A>G	uc003izs.1	+	c.457A>G	c.(457-459)AAT>GAT	p.N153D	FRG1_uc003izr.1_Non-coding_Transcript	NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	153					nuclear mRNA splicing, via spliceosome|rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)												0.104167	6.638726	14.121169	5	43	AA		KEEP	---	---	---	---	capture		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)	Missense_Mutation	SNP	191115571	191115571	6294	4	A	G	G	1	1	FRG1	G	4	4
RASSF6	166824	broad.mit.edu	36	4	74696404	74696404	+	Silent	SNP	G	T	T			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr4:74696404G>T	uc003hhd.1	-	c.69C>A	c.(67-69)TCC>TCA	p.S23S	RASSF6_uc003hhc.1_5'UTR|RASSF6_uc010iik.1_5'UTR|RASSF6_uc010iil.1_Intron	NM_201431	NP_803876	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	23					apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)													0.160494	26.127887	35.010871	13	68	GG		KEEP	---	---	---	---	capture	all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)		Silent	SNP	74696404	74696404	13551	4	G	T	T	35	35	RASSF6	T	3	3
FRAS1	80144	broad.mit.edu	36	4	79562124	79562124	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr4:79562124C>T	uc003hkx.2	+	c.4621C>T	c.(4621-4623)CGC>TGC	p.R1541C	FRAS1_uc003hkw.2_Missense_Mutation_p.R1542C|FRAS1_uc010ijj.1_Intron	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1541	CSPG 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5														0.253731	85.061193	92.389985	34	100	CC		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	79562124	79562124	6288	4	C	T	T	23	23	FRAS1	T	1	1
GAK	2580	broad.mit.edu	36	4	850238	850238	+	Missense_Mutation	SNP	T	C	C			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr4:850238T>C	uc003gbm.2	-	c.2957A>G	c.(2956-2958)AAT>AGT	p.N986S	GAK_uc010ibi.1_Missense_Mutation_p.N167S|GAK_uc010ibj.1_Non-coding_Transcript|GAK_uc003gbl.2_Missense_Mutation_p.N839S|GAK_uc003gbn.2_Missense_Mutation_p.N907S	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	986					cell cycle|protein phosphorylation	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)	3										679				0.216216	22.907356	25.636024	8	29	TT		KEEP	---	---	---	---	capture		Colorectal(103;0.219)	Missense_Mutation	SNP	850238	850238	6459	4	T	C	C	52	52	GAK	C	4	4
PCDHA13	56136	broad.mit.edu	36	5	140243665	140243665	+	Missense_Mutation	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:140243665C>T	uc003lif.1	+	c.1628C>T	c.(1627-1629)CCG>CTG	p.P543L	PCDHA1_uc003lha.1_Intron|PCDHA1_uc003lhb.1_Intron|PCDHA2_uc003lhd.1_Intron|PCDHA3_uc003lhf.1_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA4_uc003lhi.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.1_Intron|PCDHA6_uc003lho.1_Intron|PCDHA6_uc003lhn.1_Intron|PCDHA7_uc003lhq.1_Intron|PCDHA8_uc003lhs.1_Intron|PCDHA9_uc003lhu.1_Intron|PCDHA10_uc003lhx.1_Intron|PCDHA10_uc003lhw.1_Intron|PCDHA11_uc003lia.1_Intron|PCDHA12_uc003lic.1_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.P543L|PCDHA13_uc003lid.1_Missense_Mutation_p.P543L	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	543	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4						Melanoma(147;1739 1852 5500 27947 37288)								0.191781	29.211423	35.688486	14	59	CC		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Missense_Mutation	SNP	140243665	140243665	11943	5	C	T	T	23	23	PCDHA13	T	1	1
PCDHGA3	56112	broad.mit.edu	36	5	140705937	140705937	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr5:140705937G>A	uc003ljm.1	+	c.2153G>A	c.(2152-2154)CGC>CAC	p.R718H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.R478H|PCDHGA3_uc003ljl.1_Missense_Mutation_p.R718H	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	718	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1														0.216216	32.929737	38.380106	16	58	GG		KEEP	---	---	---	---	capture	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Missense_Mutation	SNP	140705937	140705937	11975	5	G	A	A	38	38	PCDHGA3	A	1	1
TRIO	7204	broad.mit.edu	36	5	14442446	14442446	+	Missense_Mutation	SNP	A	G	G			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr5:14442446A>G	uc003jff.1	+	c.3997A>G	c.(3997-3999)ATT>GTT	p.I1333V	TRIO_uc003jfg.1_Non-coding_Transcript|TRIO_uc003jfh.1_Missense_Mutation_p.I982V	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1333	DH 1.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|breast(2)|stomach(1)|kidney(1)	16	Lung NSC(4;0.000742)									1300				0.25	16.238156	17.601907	6	18	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	14442446	14442446	17102	5	A	G	G	8	8	TRIO	G	4	4
CCDC99	54908	broad.mit.edu	36	5	168960980	168960980	+	Silent	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr5:168960980G>A	uc003mae.2	+	c.1443G>A	c.(1441-1443)CCG>CCA	p.P481P	CCDC99_uc010jjj.1_Silent_p.P410P|CCDC99_uc010jjk.1_Silent_p.P207P	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	481					cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)												0.294118	38.106511	40.040556	15	36	GG		KEEP	---	---	---	---	capture	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Silent	SNP	168960980	168960980	3001	5	G	A	A	38	38	CCDC99	A	1	1
AP3B1	8546	broad.mit.edu	36	5	77513159	77513159	+	Silent	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr5:77513159C>T	uc003kfj.1	-	c.870G>A	c.(868-870)CCG>CCA	p.P290P		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	290					endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)												0.295455	35.35779	37.004597	13	31	CC		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)	Silent	SNP	77513159	77513159	754	5	C	T	T	19	19	AP3B1	T	1	1
ZNF323	64288	broad.mit.edu	36	6	28405392	28405392	+	Silent	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr6:28405392C>T	uc003nla.1	-	c.48G>A	c.(46-48)GAG>GAA	p.E16E	ZNF323_uc003nlb.1_Intron|ZNF323_uc003nld.1_Silent_p.E16E|ZNF323_uc010jra.1_Silent_p.E16E|ZNF323_uc003nlc.1_Silent_p.E16E|ZNF323_uc010jrb.1_5'Flank	NM_030899	NP_112161	Q96LW9	ZN323_HUMAN	zinc finger protein 323	16					regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						Colon(115;1052 1587 16954 47314 53012)								0.253165	52.671445	57.035662	20	59	CC		KEEP	---	---	---	---	capture			Silent	SNP	28405392	28405392	18435	6	C	T	T	24	24	ZNF323	T	2	2
EHMT2	10919	broad.mit.edu	36	6	31963990	31963990	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:31963990G>A	uc003nxz.1	-	c.1552C>T	c.(1552-1554)CGC>TGC	p.R518C	EHMT2_uc003nxx.1_5'Flank|EHMT2_uc003nxy.1_Missense_Mutation_p.R309C|EHMT2_uc003nya.1_Missense_Mutation_p.R484C	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	518					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1														0.268293	30.506609	32.493697	11	30	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	31963990	31963990	5173	6	G	A	A	39	39	EHMT2	A	1	1
SLC26A8	116369	broad.mit.edu	36	6	36088105	36088105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr6:36088105G>A	uc003olm.1	-	c.211C>T	c.(211-213)CGA>TGA	p.R71*	SLC26A8_uc003oln.1_Nonsense_Mutation_p.R71*|SLC26A8_uc003oll.1_Nonsense_Mutation_p.R71*	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	71	Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2														0.273684	61.873778	66.286622	26	69	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	36088105	36088105	15020	6	G	A	A	40	40	SLC26A8	A	5	1
MUC17	140453	broad.mit.edu	36	7	100461646	100461646	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:100461646G>A	uc003uxp.1	+	c.229G>A	c.(229-231)GTG>ATG	p.V77M	MUC17_uc010lho.1_Non-coding_Transcript	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17	77	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|breast(3)|lung(2)	19	Lung NSC(181;0.136)|all_lung(186;0.182)													0.211538	25.301419	29.299685	11	41	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	100461646	100461646	10368	7	G	A	A	40	40	MUC17	A	1	1
ASB10	136371	broad.mit.edu	36	7	150508985	150508985	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:150508985G>A	uc003wjm.1	-	c.1213C>T	c.(1213-1215)CGT>TGT	p.R405C	ASB10_uc003wjl.1_Missense_Mutation_p.R360C|ASB10_uc003wjn.1_Missense_Mutation_p.R345C	NM_080871	NP_543147	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	360	ANK 7.				intracellular signal transduction						0														0.352941	17.247385	17.570467	6	11	GG		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Missense_Mutation	SNP	150508985	150508985	1032	7	G	A	A	39	39	ASB10	A	1	1
MLL3	58508	broad.mit.edu	36	7	151552585	151552585	+	Missense_Mutation	SNP	A	C	C			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr7:151552585A>C	uc003wla.1	-	c.3026T>G	c.(3025-3027)GTG>GGG	p.V1009G	MLL3_uc003wkz.1_Missense_Mutation_p.V70G	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1009	PHD-type 5.|PHD-type 4.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			pancreas(12)|ovary(7)|large_intestine(6)|central_nervous_system(4)|urinary_tract(1)|skin(1)	31	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)				Colon(68;14 1149 1884 27689 34759)				1780				0.15	6.812313	9.160244	3	17	AA		KEEP	---	---	---	---	capture	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)	Missense_Mutation	SNP	151552585	151552585	10012	7	A	C	C	6	6	MLL3	C	4	4
TNS3	64759	broad.mit.edu	36	7	47303287	47303287	+	Silent	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:47303287G>A	uc003tnv.1	-	c.3594C>T	c.(3592-3594)GAC>GAT	p.D1198D	TNS3_uc003tnw.1_Silent_p.D1198D	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	1198	SH2.					focal adhesion	protein binding			ovary(4)	4														0.19697	26.436539	32.083611	13	53	GG		KEEP	---	---	---	---	capture			Silent	SNP	47303287	47303287	16885	7	G	A	A	48	48	TNS3	A	2	2
PCLO	27445	broad.mit.edu	36	7	82602158	82602158	+	Nonsense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr7:82602158G>A	uc003uhx.2	-	c.2644C>T	c.(2644-2646)CGA>TGA	p.R882*	PCLO_uc003uhv.2_Nonsense_Mutation_p.R882*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	828	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity|zinc ion binding			ovary(7)	7														0.212838	139.263746	161.83565	63	233	GG		KEEP	---	---	---	---	capture			Nonsense_Mutation	SNP	82602158	82602158	12003	7	G	A	A	40	40	PCLO	A	5	1
PLEC	5339	broad.mit.edu	36	8	145064356	145064356	+	Missense_Mutation	SNP	A	G	G			TCGA-76-6192-01	TCGA-76-6192-01	A	A								Phase_I	Unspecified				Illumina GAIIx	g.chr8:145064356A>G	uc003zaf.1	-	c.12032T>C	c.(12031-12033)CTC>CCC	p.L4011P	PLEC_uc003zag.1_Missense_Mutation_p.L3852P|PLEC_uc003zah.1_Missense_Mutation_p.L3860P|PLEC_uc003zai.1_Missense_Mutation_p.L3901P|PLEC_uc003zaj.1_Missense_Mutation_p.L3901P|PLEC_uc003zab.1_Missense_Mutation_p.L3874P|PLEC_uc003zac.1_Missense_Mutation_p.L3878P|PLEC_uc003zad.1_Missense_Mutation_p.L3874P|PLEC_uc003zae.1_Missense_Mutation_p.L3842P	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin 1 isoform 6	4011	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|central_nervous_system(1)	7														0.272727	7.520346	8.032389	3	8	AA		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	145064356	145064356	12478	8	A	G	G	11	11	PLEC	G	4	4
PMPCA	23203	broad.mit.edu	36	9	138431258	138431258	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chr9:138431258G>A	uc004chl.1	+	c.668G>A	c.(667-669)CGT>CAT	p.R223H	PMPCA_uc010nbl.1_Missense_Mutation_p.R123H|PMPCA_uc004chm.1_5'UTR|PMPCA_uc004chn.1_5'Flank	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	223					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)												0.2	6.617092	7.872211	3	12	GG		KEEP	---	---	---	---	capture		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)	Missense_Mutation	SNP	138431258	138431258	12566	9	G	A	A	40	40	PMPCA	A	1	1
NFIB	4781	broad.mit.edu	36	9	14297176	14297176	+	Missense_Mutation	SNP	T	C	C			TCGA-76-6192-01	TCGA-76-6192-01	T	T								Phase_I	Unspecified				Illumina GAIIx	g.chr9:14297176T>C	uc003zlf.1	-	c.374A>G	c.(373-375)GAC>GGC	p.D125G	NFIB_uc003zle.1_Missense_Mutation_p.D125G	NM_005596	NP_005587	O00712	NFIB_HUMAN	nuclear factor I/B	125	CTF/NF-I.				DNA replication	nucleolus	sequence-specific DNA binding transcription factor activity				0						Esophageal Squamous(132;921 1730 14828 40753 46471)								0.383562	93.787997	94.654013	28	45	TT		KEEP	---	---	---	---	capture		GBM - Glioblastoma multiforme(50;4.4e-08)|LUAD - Lung adenocarcinoma(58;0.119)|Lung(218;0.164)	Missense_Mutation	SNP	14297176	14297176	10771	9	T	C	C	58	58	NFIB	C	4	4
TMC1	117531	broad.mit.edu	36	9	74635193	74635193	+	Silent	SNP	C	T	T			TCGA-76-6192-01	TCGA-76-6192-01	C	C								Phase_I	Unspecified				Illumina GAIIx	g.chr9:74635193C>T	uc004aiz.1	+	c.2136C>T	c.(2134-2136)GCC>GCT	p.A712A	TMC1_uc010moz.1_Silent_p.A670A|TMC1_uc004aja.1_Non-coding_Transcript|TMC1_uc004ajb.1_Non-coding_Transcript|TMC1_uc004ajc.1_Silent_p.A566A|TMC1_uc010mpa.1_Silent_p.A566A	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	712	Helical; (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						Pancreas(75;173 1345 14232 34245 43413)								0.153846	11.824452	16.29236	6	33	CC		KEEP	---	---	---	---	capture			Silent	SNP	74635193	74635193	16514	9	C	T	T	21	21	TMC1	T	2	2
LUZP4	51213	broad.mit.edu	36	X	114447524	114447524	+	Missense_Mutation	SNP	G	A	A			TCGA-76-6192-01	TCGA-76-6192-01	G	G								Phase_I	Unspecified				Illumina GAIIx	g.chrX:114447524G>A	uc004eqa.1	+	c.841G>A	c.(841-843)GTG>ATG	p.V281M	LUZP4_uc004eqb.1_Missense_Mutation_p.V199M	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	281						nucleus				ovary(2)	2														0.682927	90.112102	91.331433	28	13	GG		KEEP	---	---	---	---	capture			Missense_Mutation	SNP	114447524	114447524	9464	23	G	A	A	40	40	LUZP4	A	1	1
PLA2G4E	123745	broad.mit.edu	36	15	40089630	40089630	+	Frame_Shift_Del	DEL	A	-	-	rs28736629	unknown	TCGA-76-6192-01	TCGA-76-6192-01										Phase_I	Unspecified				Illumina GAIIx	g.chr15:40089630_40089630delA	uc001zow.1	-	c.108_108delT	c.(106-108)GGTfs	p.G36fs		NM_001080490	NP_001073959	C9JK77	C9JK77_HUMAN	phospholipase A2, group IVE	36					phospholipid catabolic process						0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)										0.50			4	4				---	---	---	---	capture_indel			Frame_Shift_Del	DEL	40089630	40089630	12431	15	A	-	-	6	6	PLA2G4E	-	5	5
C16orf3	750	broad.mit.edu	36	16	88623046	88623047	+	In_Frame_Ins	INS	-	CTACGGGGCAGCCTATGGGGCAGG	CTACGGGGCAGCCTATGGGGCAGG			TCGA-76-6192-01	TCGA-76-6192-01										Phase_I	Unspecified				Illumina GAIIx	g.chr16:88623046_88623047insCTACGGGGCAGCCTATGGGGCAGG	uc002fqk.1	-	c.205_206insCCTGCCCCATAGGCTGCCCCGTAG	c.(205-207)GGC>GCCTGCCCCATAGGCTGCCCCGTAGGC	p.68_69insACPIGCPV	GAS8_uc002fqh.1_Intron|GAS8_uc010cjc.1_Intron|GAS8_uc002fqi.1_Intron|GAS8_uc002fqj.1_Intron	NM_001214	NP_001205	O95177	CP003_HUMAN	hypothetical protein LOC750	76_77											0		all_cancers(9;9.01e-08)|Hepatocellular(780;0.000325)|Lung NSC(15;0.0104)|all_lung(18;0.0239)		BRCA - Breast invasive adenocarcinoma(80;0.0272)										0.33			2	4				---	---	---	---	capture_indel			In_Frame_Ins	INS	88623046	88623047	1864	16	-	CTACGGGGCAGCCTATGGGGCAGG	CTACGGGGCAGCCTATGGGGCAGG	26	26	C16orf3	CTACGGGGCAGCCTATGGGGCAGG	5	5
