Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACP6	51205	genome.wustl.edu	37	1	147120061	147120061	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	147120061	147120061	T	C	SNP	ACP6	NM_016361	human	genbank	57_37b	-1	validated	missense	c.1130	p.Y377C	0.887	superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A	superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors	
AHDC1	27245	genome.wustl.edu	37	1	27875711	27875711	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27875711	27875711	G	-	DEL	AHDC1	NM_001029882	human	genbank	57_37b	-1	validated	frame_shift_del	c.2916	p.G973fs	0.041	NULL	HMMSmart_AT_hook,HMMPfam_AT_hook	(deletion:cds_exon[27873815,27878626])	no_errors	
AIM1	202	genome.wustl.edu	37	6	106989161	106989161	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	106989161	106989161	T	C	SNP	AIM1	ENST00000285105	human	ensembl	57_37b	+1	known	silent	c.69	p.F23	0.000	NULL	superfamily_G_crystallin_SF,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin	-	no_errors	
ANKRD62	342850	genome.wustl.edu	37	18	12096249	12096249	+	Missense_Mutation	SNP	G	G	T	rs1986751	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12096249	12096249	G	T	SNP	ANKRD62	XM_292717	human	genbank	57_37b	+1	model	missense	c.562	p.A188S	0.002	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-		
ANUBL1	93550	genome.wustl.edu	37	10	46135376	46135376	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	46135376	46135376	T	A	SNP	ANUBL1	NM_001128324	human	genbank	57_37b	-1	validated	missense	c.605	p.D202V	1.000	NULL	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,HMMSmart_SM00154,HMMPfam_zf-AN1	-	no_errors	
ATP1A4	480	genome.wustl.edu	37	1	160144388	160144388	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160144388	160144388	C	T	SNP	ATP1A4	NM_144699	human	genbank	57_37b	+1	reviewed	missense	c.2162	p.T721I	0.999	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
CDY2A	9426	genome.wustl.edu	37	Y	20138094	20138094	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	Y	20138094	20138094	C	T	SNP	CDY2A	NM_004825	human	genbank	57_37b	+1	reviewed	nonsense	c.100	p.Q34*	0.105	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,PatternScan_CHROMO_1	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,PatternScan_CHROMO_1,superfamily_SSF52096,HMMPfam_ECH	-	no_errors	
CLEC12A	160364	genome.wustl.edu	37	12	10134654	10134654	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10134654	10134654	T	C	SNP	CLEC12A	NM_138337	human	genbank	57_37b	+1	reviewed	silent	c.567	p.Y189	0.826	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors	
CSMD1	64478	genome.wustl.edu	37	8	3076793	3076793	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	3076793	3076793	G	A	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	silent	c.4659	p.F1553	0.975	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
DCST1	149095	genome.wustl.edu	37	1	155020578	155020578	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155020578	155020578	A	T	SNP	DCST1	NM_152494	human	genbank	57_37b	+1	validated	nonsense	c.1801	p.K601*	1.000	NULL	HMMPfam_DC_STAMP	-	no_errors	
DKFZp686A1627	266695	genome.wustl.edu	37	13	19626089	19626089	+	RNA	SNP	G	G	A	rs56284000	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19626089	19626089	G	A	SNP	DKFZp686A1627	NR_002801	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.980	-	-	-		
EGR3	1960	genome.wustl.edu	37	8	22548460	22548460	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22548460	22548460	G	-	DEL	EGR3	NM_004430	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.690	p.I231fs	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[22547986,22548995])	no_errors	
ENSG00000206772	0	genome.wustl.edu	37	11	112223299	112223299	+	RNA	SNP	G	G	A	rs4483622	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	112223299	112223299	G	A	SNP	ENSG00000206772	ENST00000384045	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.001	-	-	-		
ENSG00000234010	0	genome.wustl.edu	37	1	153895936	153895936	+	RNA	SNP	A	G	G	rs76474450	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153895936	153895936	A	G	SNP	ENSG00000234010	ENST00000413970	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.002	-	-	-		
ENSG00000245038	0	genome.wustl.edu	37	20	60581049	60581049	+	RNA	SNP	G	A	A	rs1886007	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60581049	60581049	G	A	SNP	ENSG00000245038	ENST00000499644	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245148	0	genome.wustl.edu	37	11	72415968	72415968	+	RNA	SNP	A	C	C	rs730783	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	72415968	72415968	A	C	SNP	ENSG00000245148	ENST00000500163	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245283	0	genome.wustl.edu	37	1	230781741	230781741	+	RNA	SNP	G	A	A	rs4847000	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	230781741	230781741	G	A	SNP	ENSG00000245283	ENST00000500580	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.059	-	-	-		
ENSG00000245584	0	genome.wustl.edu	37	17	37323248	37323248	+	RNA	SNP	C	G	G	rs578480	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37323248	37323248	C	G	SNP	ENSG00000245584	ENST00000499382	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.097	-	-	-		
ENSG00000246624	0	genome.wustl.edu	37	13	79979826	79979826	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	79979826	79979826	C	T	SNP	ENSG00000246624	ENST00000499316	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.170	-	-	-	no_errors	
ENSG00000247787	0	genome.wustl.edu	37	19	39155880	39155880	+	RNA	SNP	G	A	A	rs3786835	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39155880	39155880	G	A	SNP	ENSG00000247787	ENST00000501507	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ESYT1	23344	genome.wustl.edu	37	12	56532266	56532266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56532266	56532266	C	T	SNP	ESYT1	NM_015292	human	genbank	57_37b	+1	provisional	missense	c.2416	p.R806W	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
FLJ46838	440865	genome.wustl.edu	37	2	48757883	48757883	+	RNA	SNP	G	T	T	rs74428902	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	48757883	48757883	G	T	SNP	FLJ46838	XR_078250	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.001	-	-	-		
FLJ90757	440465	genome.wustl.edu	37	17	79004616	79004616	+	RNA	SNP	C	T	T	rs12452150	byCluster;byHapMap;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79004616	79004616	C	T	SNP	FLJ90757	NR_026857	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
GOLGA3	2802	genome.wustl.edu	37	12	133393258	133393258	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133393258	133393258	C	A	SNP	GOLGA3	NM_005895	human	genbank	57_37b	-1	reviewed	missense	c.274	p.D92Y	1.000	NULL	superfamily_Spectrin repeat,superfamily_Prefoldin	-	no_errors	
HEATR4	399671	genome.wustl.edu	37	14	73989691	73989691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	73989691	73989691	G	A	SNP	HEATR4	NM_203309	human	genbank	57_37b	-1	provisional	missense	c.25	p.R9C	0.000	NULL	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors	
ID2	3398	genome.wustl.edu	37	2	8822549	8822549	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	8822549	8822549	T	C	SNP	ID2	NM_002166	human	genbank	57_37b	+1	reviewed	missense	c.254	p.I85T	0.814	superfamily_HLH helix-loop-helix DNA-binding domain	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors	
IKBKB	3551	genome.wustl.edu	37	8	42179428	42179428	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42179428	42179428	G	T	SNP	IKBKB	NM_001556	human	genbank	57_37b	+1	validated	missense	c.1703	p.R568M	1.000	NULL	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_ubiquitin	-	no_errors	
KCNH7	90134	genome.wustl.edu	37	2	163256927	163256928	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	163256927	163256928	-	T	INS	KCNH7	NM_033272	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.2179_2178	p.L726fs	1.000:0.978	superfamily_cAMP-binding domain-like	superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors	
LOC100289618	0	genome.wustl.edu	37	9	78942944	78942944	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	78942944	78942944	G	C	SNP	LOC100289618	XM_002342941	human	genbank	57_37b	+1	model	missense	c.1257	p.L419F	0.040	superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181	HMMSmart_SM00261,superfamily_Growth factor receptor domain,HMMSmart_SM00181	-	no_errors	
LOC646085	646085	genome.wustl.edu	37	3	161046846	161046846	+	RNA	SNP	G	G	T	rs78376802	byCluster;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	161046846	161046846	G	T	SNP	LOC646085	XR_017630	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.959	-	-	-		
LPP	4026	genome.wustl.edu	37	3	188584034	188584034	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	188584034	188584034	G	A	SNP	LPP	NM_005578	human	genbank	57_37b	+1	validated	missense	c.1457	p.R486Q	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
MGC16275	0	genome.wustl.edu	37	17	72209253	72209253	+	RNA	SNP	C	T	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72209253	72209253	C	T	SNP	MGC16275	NR_026914	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
MGC16384	114130	genome.wustl.edu	37	12	129299134	129299134	+	RNA	SNP	T	T	C	rs61946217	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	129299134	129299134	T	C	SNP	MGC16384	NR_026666	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
ODZ4	26011	genome.wustl.edu	37	11	78780799	78780799	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78780799	78780799	A	T	SNP	ODZ4	NM_001098816	human	genbank	57_37b	-1	validated	missense	c.191	p.V64E	1.000	HMMPfam_Ten_N	HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196,superfamily_SSF101898,superfamily_TolB_C,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
PIPSL	266971	genome.wustl.edu	37	10	95720549	95720549	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95720549	95720549	T	C	SNP	PIPSL	ENST00000340582	human	ensembl	57_37b	-1	known	missense	c.605	p.H202R	1.000	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_UIM	-	no_errors	
RRP12	23223	genome.wustl.edu	37	10	99130258	99130258	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99130258	99130258	G	A	SNP	RRP12	NM_015179	human	genbank	57_37b	-1	validated	silent	c.2643	p.L881	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_NUC173	-	no_errors	
SCN8A	6334	genome.wustl.edu	37	12	52099215	52099215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52099215	52099215	C	T	SNP	SCN8A	NM_014191	human	genbank	57_37b	+1	validated	silent	c.1149	p.A383	0.954	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_ODR_DC_2_1,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
SEZ6L2	26470	genome.wustl.edu	37	16	29888138	29888138	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29888138	29888138	G	-	DEL	SEZ6L2	NM_201575	human	genbank	57_37b	-1	validated	frame_shift_del	c.2043	p.D682fs	0.610	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB	(deletion:cds_exon[29888077,29888271])	no_errors	
SMARCA1	6594	genome.wustl.edu	37	X	128614761	128614761	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	128614761	128614761	G	-	DEL	SMARCA1	NM_003069	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2359	p.Q787fs	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI,HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_SLIDE	(deletion:cds_exon[128614678,128614791])	no_errors	
STEAP2	261729	genome.wustl.edu	37	7	89854877	89854879	+	In_Frame_Del	DEL	GCC	GCC	-	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	GCC	GCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	89854877	89854879	GCC	-	DEL	STEAP2	NM_001040665	human	genbank	57_37b	+1	reviewed	in_frame_del	c.481_483	p.A161in_frame_del	1.000:1.000:1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored,HMMPfam_Ferric_reduct	(deletion:cds_exon[89854397,89854888])	no_errors	
TBC1D8	11138	genome.wustl.edu	37	2	101648789	101648789	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	101648789	101648789	C	T	SNP	TBC1D8	NM_001102426	human	genbank	57_37b	-1	validated	nonsense	c.1832	p.W611*	1.000	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand	-	no_errors	
TCTE1	202500	genome.wustl.edu	37	6	44250253	44250253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44250253	44250253	C	T	SNP	TCTE1	NM_182539	human	genbank	57_37b	-1	validated	missense	c.890	p.R297H	0.997	superfamily_SSF52047	superfamily_SSF52047	-	no_errors	
TSNARE1	203062	genome.wustl.edu	37	8	143436021	143436021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143436021	143436021	G	A	SNP	TSNARE1	NM_145003	human	genbank	57_37b	-1	validated	missense	c.65	p.S22L	0.030	NULL	superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE	-	no_errors	
ZNF229	7772	genome.wustl.edu	37	19	44936532	44936532	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A1-A0SM-01	TCGA-A1-A0SM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44936532	44936532	T	G	SNP	ZNF229	NM_014518	human	genbank	57_37b	-1	validated	missense	c.103	p.S35R	0.640	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
