Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACOXL	55289	genome.wustl.edu	37	2	111551702	111551703	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	111551702	111551703	-	A	INS	ACOXL	NM_001142807	human	genbank	57_37b	+1	validated	frame_shift_ins	c.296_297	p.S99fs	1.000:1.000	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_ACOX	-	no_errors	
AWAT2	158835	genome.wustl.edu	37	X	69262054	69262054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69262054	69262054	C	T	SNP	AWAT2	NM_001002254	human	genbank	57_37b	-1	validated	missense	c.830	p.R277Q	0.002	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors	
BAHCC1	57597	genome.wustl.edu	37	17	79412530	79412530	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79412530	79412530	C	-	DEL	BAHCC1	ENST00000436173	human	ensembl	57_37b	+1	known	frame_shift_del	c.2986	p.P996fs	0.956	NULL	HMMPfam_BAH,HMMSmart_SM00439	(deletion:cds_exon[79412380,79412707])	no_errors	
BCAR3	8412	genome.wustl.edu	37	1	94057926	94057926	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94057926	94057926	C	T	SNP	BCAR3	NM_003567	human	genbank	57_37b	-1	reviewed	missense	c.382	p.D128N	1.000	superfamily_Ras GEF	superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00147	-	no_errors	
BTN3A2	11118	genome.wustl.edu	37	6	26368860	26368860	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26368860	26368860	C	T	SNP	BTN3A2	NM_007047	human	genbank	57_37b	+1	reviewed	silent	c.153	p.P51	0.681	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	-	no_errors	
C19orf40	91442	genome.wustl.edu	37	19	33464409	33464409	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33464409	33464409	A	-	DEL	C19orf40	NM_152266	human	genbank	57_37b	+1	validated	frame_shift_del	c.184	p.T62fs	1.000	NULL	superfamily_RuvA_2_like	(deletion:cds_exon[33464332,33464468])	no_errors	
C2orf63	130162	genome.wustl.edu	37	2	55408757	55408757	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	55408757	55408757	C	A	SNP	C2orf63	NM_152385	human	genbank	57_37b	-1	validated	missense	c.1130	p.G377V	0.990	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
C9orf140	89958	genome.wustl.edu	37	9	139960101	139960101	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139960101	139960101	A	-	DEL	C9orf140	NM_178448	human	genbank	57_37b	-1	validated	frame_shift_del	c.704	p.L235fs	1.000	NULL	NULL	(deletion:cds_exon[139959974,139960120])	no_errors	
CCND3	896	genome.wustl.edu	37	6	41909275	41909275	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41909275	41909275	T	-	DEL	CCND3	NM_001760	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.113	p.Y38fs	1.000	superfamily_Cyclin_like,HMMPfam_Cyclin_N	superfamily_Cyclin_like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_CYCLIN,HMMPfam_Cyclin_C	(deletion:cds_exon[41909190,41909387])	no_errors	
CCND3	896	genome.wustl.edu	37	6	41909280	41909281	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41909280	41909281	-	A	INS	CCND3	NM_001760	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.108_107	p.E36fs	1.000:1.000	HMMPfam_Cyclin_N,superfamily_Cyclin_like	HMMPfam_Cyclin_C,HMMSmart_CYCLIN,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors	
CCND3	896	genome.wustl.edu	37	6	41909284	41909284	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41909284	41909284	T	-	DEL	CCND3	NM_001760	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.104	p.E35fs	1.000	HMMPfam_Cyclin_N,superfamily_Cyclin_like	HMMPfam_Cyclin_C,HMMSmart_CYCLIN,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin_like	(deletion:cds_exon[41909190,41909387])	no_errors	
CGNL1	84952	genome.wustl.edu	37	15	57730943	57730943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	57730943	57730943	C	T	SNP	CGNL1	NM_032866	human	genbank	57_37b	+1	validated	missense	c.746	p.A249V	0.128	NULL	HMMPfam_Myosin_tail_1	-	no_errors	
CHGA	1113	genome.wustl.edu	37	14	93397759	93397761	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	93397759	93397761	GAG	-	DEL	CHGA	NM_001275	human	genbank	57_37b	+1	reviewed	in_frame_del	c.520_522	p.E177in_frame_del	0.168:0.190:0.200	HMMPfam_Granin	HMMPfam_Granin,PatternScan_GRANINS_2,PatternScan_GRANINS_1	(deletion:cds_exon[93397595,93398047])	no_errors	
CMIP	80790	genome.wustl.edu	37	16	81739192	81739193	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81739192	81739193	GC	-	DEL	CMIP	NM_198390	human	genbank	57_37b	+1	validated	frame_shift_del	c.2180_2181	p.G727fs	1.000:0.909	superfamily_RNI-like	superfamily_PH domain-like,PatternScan_WD_REPEATS_1,superfamily_RNI-like	(deletion:cds_exon[81739104,81739209])	no_errors	
DIRC2	84925	genome.wustl.edu	37	3	122545885	122545885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122545885	122545885	G	A	SNP	DIRC2	NM_032839	human	genbank	57_37b	+1	reviewed	missense	c.676	p.D226N	1.000	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors	
DNAH6	0	genome.wustl.edu	37	2	84774616	84774616	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	84774616	84774616	G	T	SNP	DNAH6	NM_001370	human	genbank	57_37b	+1	validated	missense	c.1066	p.V356L	1.000	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
ENSG00000222088	0	genome.wustl.edu	37	Y	10037883	10037883	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	Y	10037883	10037883	G	A	SNP	ENSG00000222088	ENST00000410156	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors	
ENSG00000234719	0	genome.wustl.edu	37	16	12021296	12021298	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	12021296	12021298	TGG	-	DEL	ENSG00000234719	ENST00000399147	human	ensembl	57_37b	-1	known	in_frame_del	c.1077_1075	p.P359in_frame_del	0.017:0.018:0.018	NULL	HMMPfam_NPIP	(deletion:cds_exon[12021230,12021736])	no_errors	
ENSG00000245028	0	genome.wustl.edu	37	3	136067778	136067778	+	RNA	SNP	G	G	T	rs696516	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136067778	136067778	G	T	SNP	ENSG00000245028	ENST00000501385	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.002	-	-	-		
ENSG00000245898	0	genome.wustl.edu	37	7	44425373	44425373	+	RNA	DEL	C	C	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44425373	44425373	C	-	DEL	ENSG00000245898	ENST00000500718	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	(deletion:rna[44423188,44426784])	no_errors	
EPB41L2	2037	genome.wustl.edu	37	6	131206388	131206389	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	131206388	131206389	-	T	INS	EPB41L2	NM_001431	human	genbank	57_37b	-1	validated	frame_shift_ins	c.1681_1680	p.Q560fs	1.000:1.000	NULL	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors	
GAPVD1	26130	genome.wustl.edu	37	9	128117999	128117999	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	128117999	128117999	G	A	SNP	GAPVD1	ENST00000438537	human	ensembl	57_37b	+1	known	nonsense	c.11	p.W4*	1.000	NULL	superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9	-	no_errors	
GARNL3	84253	genome.wustl.edu	37	9	130153011	130153011	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130153011	130153011	C	A	SNP	GARNL3	NM_032293	human	genbank	57_37b	+1	validated	silent	c.2835	p.P945	0.998	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
IQSEC1	9922	genome.wustl.edu	37	3	12950804	12950804	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	12950804	12950804	T	-	DEL	IQSEC1	NM_014869	human	genbank	57_37b	-1	validated	frame_shift_del	c.2589	p.V864fs	1.000	superfamily_PH domain-like,HMMSmart_SM00233	superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMSmart_SM00233	(deletion:cds_exon[12950773,12950934])	no_errors	
KAZ	0	genome.wustl.edu	37	1	15392250	15392250	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15392250	15392250	G	A	SNP	KAZ	NM_201628	human	genbank	57_37b	+1	validated	splice_site	c.1222+1	e8+1	1.000	-	-	-	no_errors	
KRTAP4-9	85286	genome.wustl.edu	37	17	39262140	39262140	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39262140	39262140	C	A	SNP	KRTAP4-9	XM_002343553	human	genbank	57_37b	+1	model	missense	c.481	p.P161T	0.896	NULL	NULL	-	no_errors	
LCMT2	9836	genome.wustl.edu	37	15	43621743	43621743	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43621743	43621743	G	-	DEL	LCMT2	NM_014793	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.945	p.D315fs	0.001	NULL	superfamily_SSF53335,HMMPfam_LCM,superfamily_Gal_oxid_central,HMMPfam_Kelch_2	(deletion:cds_exon[43620627,43622687])	no_errors	
LOC100289287	0	genome.wustl.edu	37	9	71869416	71869416	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	71869416	71869416	T	-	DEL	LOC100289287	XM_002342938	human	genbank	57_37b	-1	model	frame_shift_del	c.407	p.H136fs	0.000	NULL	NULL	(deletion:cds_exon[71869331,71869640])	no_errors	
LOC441666	441666	genome.wustl.edu	37	10	42832578	42832578	+	RNA	SNP	G	G	T	rs2466466	byCluster;by2Hit2Allele;byHapMap	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42832578	42832578	G	T	SNP	LOC441666	NR_024380	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	1.000	-	-	-		
LRGUK	136332	genome.wustl.edu	37	7	133859356	133859356	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	133859356	133859356	C	T	SNP	LRGUK	NM_144648	human	genbank	57_37b	+1	provisional	nonsense	c.988	p.R330*	0.993	superfamily_SSF52058	PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMSmart_GuKc,HMMPfam_Guanylate_kin	-	no_errors	
LY6G5B	58496	genome.wustl.edu	37	6	31639845	31639845	+	Missense_Mutation	SNP	C	C	A	rs115642432	byCluster;by1000genomes	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31639845	31639845	C	A	SNP	LY6G5B	NM_021221	human	genbank	57_37b	+1	validated	missense	c.392	p.S131Y	0.013	NULL	NULL	-		
MAP3K1	4214	genome.wustl.edu	37	5	56161284	56161284	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56161284	56161284	G	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	splice_site	c.1152+1	e5+1	1.000	-	-	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56170973	56170973	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56170973	56170973	G	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.1801	p.E601*	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MEIS2	4212	genome.wustl.edu	37	15	37186997	37186997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	37186997	37186997	C	T	SNP	MEIS2	NM_170677	human	genbank	57_37b	-1	reviewed	missense	c.1164	p.M388I	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors	
METTL7A	25840	genome.wustl.edu	37	12	51323842	51323842	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	51323842	51323842	C	T	SNP	METTL7A	NM_014033	human	genbank	57_37b	+1	validated	missense	c.644	p.A215V	0.791	superfamily_SSF53335	superfamily_SSF53335,HMMPfam_Methyltransf_11	-	no_errors	
MRFAP1L1	114932	genome.wustl.edu	37	4	6711224	6711224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6711224	6711224	C	T	SNP	MRFAP1L1	NM_203462	human	genbank	57_37b	-1	validated	missense	c.133	p.E45K	0.245	NULL	NULL	-	no_errors	
MSL3	10943	genome.wustl.edu	37	X	11783689	11783689	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	11783689	11783689	C	T	SNP	MSL3	NM_078629	human	genbank	57_37b	+1	reviewed	missense	c.1012	p.R338C	1.000	HMMPfam_MRG	HMMSmart_SM00298,HMMPfam_MRG	-	no_errors	
MYRIP	25924	genome.wustl.edu	37	3	40275393	40275393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	40275393	40275393	T	C	SNP	MYRIP	NM_015460	human	genbank	57_37b	+1	validated	missense	c.1949	p.L650P	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMPfam_MOBP	-	no_errors	
NFRKB	4798	genome.wustl.edu	37	11	129752350	129752350	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	129752350	129752350	C	T	SNP	NFRKB	NM_006165	human	genbank	57_37b	-1	validated	missense	c.1153	p.E385K	1.000	NULL	NULL	-	no_errors	
NID1	4811	genome.wustl.edu	37	1	236201470	236201470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236201470	236201470	C	T	SNP	NID1	NM_002508	human	genbank	57_37b	-1	reviewed	missense	c.1219	p.A407T	0.000	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors	
OTOF	9381	genome.wustl.edu	37	2	26700700	26700700	+	Missense_Mutation	SNP	G	A	A	rs4665855	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26700700	26700700	G	A	SNP	OTOF	NM_194322	human	genbank	57_37b	-1	reviewed	missense	c.62	p.P21L	0.006	NULL	HMMPfam_FerB,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-		
PCDHB8	56128	genome.wustl.edu	37	5	140558352	140558352	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140558352	140558352	C	T	SNP	PCDHB8	NM_019120	human	genbank	57_37b	+1	reviewed	missense	c.737	p.P246L	0.036	superfamily_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCIF1	63935	genome.wustl.edu	37	20	44575922	44575922	+	Silent	SNP	G	G	A	rs35585146	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44575922	44575922	G	A	SNP	PCIF1	NM_022104	human	genbank	57_37b	+1	validated	silent	c.1728	p.P576	0.001	NULL	PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW	-		
PFKFB4	5210	genome.wustl.edu	37	3	48561136	48561136	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48561136	48561136	G	T	SNP	PFKFB4	NM_004567	human	genbank	57_37b	-1	provisional	missense	c.1220	p.A407E	1.000	superfamily_SSF53254	HMMPfam_6PF2K,superfamily_SSF52540,HMMPfam_PGAM,superfamily_SSF53254,PatternScan_PG_MUTASE	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178938934	178938934	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.2176	p.E726K	1.000	superfamily_Kinase_like	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
POLR1C	9533	genome.wustl.edu	37	6	43484915	43484915	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43484915	43484915	A	G	SNP	POLR1C	NM_203290	human	genbank	57_37b	+1	validated	missense	c.68	p.N23S	1.000	NULL	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662,PatternScan_RNA_POL_D_30KD,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMPfam_RNA_pol_A_bac	-	no_errors	
SLC22A20	440044	genome.wustl.edu	37	11	64981522	64981522	+	Missense_Mutation	SNP	C	C	A	rs11605576	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64981522	64981522	C	A	SNP	SLC22A20	NM_001004326	human	genbank	57_37b	+1	validated	missense	c.179	p.A60D	0.000	NULL	superfamily_MFS general substrate transporter	-		
SNTG1	54212	genome.wustl.edu	37	8	51449300	51449300	+	Silent	SNP	C	C	T	rs35419988	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	51449300	51449300	C	T	SNP	SNTG1	NM_018967	human	genbank	57_37b	+1	reviewed	silent	c.612	p.C204	1.000	HMMSmart_SM00233,superfamily_PH domain-like	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00233,superfamily_PH domain-like	-		
TUBA3C	7278	genome.wustl.edu	37	13	19752393	19752393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19752393	19752393	C	T	SNP	TUBA3C	NM_006001	human	genbank	57_37b	-1	reviewed	missense	c.368	p.R123H	1.000	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors	
ZNF878	0	genome.wustl.edu	37	19	12154864	12154864	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0CP-01	TCGA-A2-A0CP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12154864	12154864	T	G	SNP	ZNF878	NM_001080404	human	genbank	57_37b	-1	inferred	missense	c.1493	p.Y498S	0.002	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
