Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AFF2	2334	genome.wustl.edu	37	X	147744200	147744200	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	147744200	147744200	C	A	SNP	AFF2	NM_002025	human	genbank	57_37b	+1	reviewed	missense	c.952	p.L318M	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	
AGRN	375790	genome.wustl.edu	37	1	985656	985656	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	985656	985656	C	T	SNP	AGRN	NM_198576	human	genbank	57_37b	+1	validated	silent	c.4923	p.N1641	0.000	superfamily_ConA_like_lec_gl	HMMPfam_NtA,superfamily_TIMP_like,HMMSmart_FOLN,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF82671,HMMPfam_SEA,HMMSmart_SEA,HMMSmart_EGF,HMMPfam_EGF,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_1,PatternScan_EGF_2	-	no_errors	
AKAP11	11215	genome.wustl.edu	37	13	42875568	42875568	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	42875568	42875568	G	A	SNP	AKAP11	NM_016248	human	genbank	57_37b	+1	reviewed	missense	c.2686	p.V896I	0.104	NULL	NULL	-	no_errors	
APBA3	9546	genome.wustl.edu	37	19	3754338	3754338	+	Missense_Mutation	SNP	A	A	C	rs55941146	byCluster;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3754338	3754338	A	C	SNP	APBA3	NM_004886	human	genbank	57_37b	-1	reviewed	missense	c.617	p.V206G	0.966	NULL	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-		
BOC	91653	genome.wustl.edu	37	3	113005658	113005658	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	113005658	113005658	C	T	SNP	BOC	NM_033254	human	genbank	57_37b	+1	validated	silent	c.3294	p.S1098	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_N6_MTASE,PatternScan_CYTOCHROME_P450	-	no_errors	
BSG	682	genome.wustl.edu	37	19	580665	580665	+	Silent	SNP	T	T	C	rs4682	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	580665	580665	T	C	SNP	BSG	NM_001728	human	genbank	57_37b	+1	reviewed	silent	c.675	p.A225	0.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-		
C4orf31	79625	genome.wustl.edu	37	4	121966920	121966920	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	121966920	121966920	G	A	SNP	C4orf31	NM_024574	human	genbank	57_37b	-1	validated	missense	c.73	p.R25W	0.979	NULL	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_DUF2369	-	no_errors	
C9orf130	286354	genome.wustl.edu	37	9	98638242	98638242	+	RNA	SNP	T	T	G	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98638242	98638242	T	G	SNP	C9orf130	NR_023389	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
C9orf5	23731	genome.wustl.edu	37	9	111881927	111881927	+	Silent	SNP	T	T	C	rs6825	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	111881927	111881927	T	C	SNP	C9orf5	NM_032012	human	genbank	57_37b	-1	validated	silent	c.267	p.L89	0.995	NULL	NULL	-		
CACNA1C	775	genome.wustl.edu	37	12	2797846	2797846	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2797846	2797846	C	T	SNP	CACNA1C	NM_199460	human	genbank	57_37b	+1	reviewed	silent	c.6267	p.S2089	0.926	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CACNA1G	8913	genome.wustl.edu	37	17	48703986	48703986	+	Silent	SNP	G	G	A	rs9893223	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48703986	48703986	G	A	SNP	CACNA1G	NM_018896	human	genbank	57_37b	+1	validated	silent	c.7008	p.P2336	0.010	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-		
CLTCL1	8218	genome.wustl.edu	37	22	19203720	19203720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19203720	19203720	G	A	SNP	CLTCL1	NM_007098	human	genbank	57_37b	-1	reviewed	missense	c.2966	p.S989L	0.996	superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299	superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin_propel,HMMPfam_Clathrin-link,superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299	-	no_errors	
COL29A1	256076	genome.wustl.edu	37	3	130116502	130116502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130116502	130116502	C	T	SNP	COL29A1	NM_153264	human	genbank	57_37b	+1	validated	missense	c.3644	p.P1215L	0.043	superfamily_SSF53300	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
CTCF	10664	genome.wustl.edu	37	16	67654645	67654645	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67654645	67654645	C	G	SNP	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	missense	c.1132	p.P378A	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
DIP2C	22982	genome.wustl.edu	37	10	323355	323355	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	323355	323355	G	A	SNP	DIP2C	NM_014974	human	genbank	57_37b	-1	reviewed	silent	c.4581	p.I1527	1.000	superfamily_SSF56801	PatternScan_AMP_BINDING,HMMPfam_DMAP_binding,superfamily_SSF56801,HMMPfam_AMP-binding	-	no_errors	
DOCK10	55619	genome.wustl.edu	37	2	225729785	225729785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	225729785	225729785	C	T	SNP	DOCK10	NM_014689	human	genbank	57_37b	-1	validated	missense	c.1277	p.S426N	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors	
E2F6	1876	genome.wustl.edu	37	2	11586417	11586417	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	11586417	11586417	G	A	SNP	E2F6	NR_003092	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors	
ENSG00000181943	0	genome.wustl.edu	37	11	55259570	55259570	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55259570	55259570	G	T	SNP	ENSG00000181943	ENST00000314657	human	ensembl	57_37b	+1	known	missense	c.852	p.R284S	0.978	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
ENSG00000221138	0	genome.wustl.edu	37	15	33256250	33256251	+	RNA	DEL	AT	AT	-	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	33256250	33256251	AT	-	DEL	ENSG00000221138	ENST00000408211	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.020:0.032	-	-	(deletion:rna[33256180,33256277])	no_errors	
ENSG00000237368	0	genome.wustl.edu	37	18	14156234	14156234	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	14156234	14156234	A	G	SNP	ENSG00000237368	ENST00000418350	human	ensembl	57_37b	-1	known	silent	c.264	p.I88	0.009	NULL	NULL	-	no_errors	
ESPNP	0	genome.wustl.edu	37	1	17046549	17046549	+	RNA	SNP	G	G	A	rs1755332	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17046549	17046549	G	A	SNP	ESPNP	NR_026567	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.000	-	-	-		
GRHL2	79977	genome.wustl.edu	37	8	102661656	102661656	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	102661656	102661656	A	T	SNP	GRHL2	NM_024915	human	genbank	57_37b	+1	reviewed	missense	c.1627	p.R543W	1.000	NULL	HMMPfam_CP2	-	no_errors	
IGHA1	0	genome.wustl.edu	37	14	106173553	106173553	+	Silent	SNP	A	G	G	rs13000	by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	106173553	106173553	A	G	SNP	IGHA1	ENST00000390547	human	ensembl	57_37b	-1	known	silent	c.1014	p.H338	0.564	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1,PatternScan_IG_MHC	-		
IPPK	64768	genome.wustl.edu	37	9	95381788	95381788	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95381788	95381788	A	G	SNP	IPPK	NM_022755	human	genbank	57_37b	-1	validated	silent	c.1230	p.S410	0.979	HMMPfam_Ins_P5_2-kin	HMMPfam_Ins_P5_2-kin	-	no_errors	
IQCG	84223	genome.wustl.edu	37	3	197618393	197618393	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197618393	197618393	A	G	SNP	IQCG	NM_001134435	human	genbank	57_37b	-1	validated	missense	c.1121	p.I374T	1.000	NULL	HMMPfam_IQ	-	no_errors	
KCNV1	27012	genome.wustl.edu	37	8	110980575	110980575	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	110980575	110980575	C	T	SNP	KCNV1	NM_014379	human	genbank	57_37b	-1	reviewed	silent	c.1245	p.S415	0.234	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
KCTD7	154881	genome.wustl.edu	37	7	66103260	66103260	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	66103260	66103260	G	T	SNP	KCTD7	NM_153033	human	genbank	57_37b	+1	validated	missense	c.335	p.R112L	1.000	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	-	no_errors	
LOC100129566	0	genome.wustl.edu	37	5	75672518	75672518	+	Missense_Mutation	SNP	G	G	A	rs73764366	byCluster;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	75672518	75672518	G	A	SNP	LOC100129566	XM_001722314	human	genbank	57_37b	+1	model	missense	c.19	p.D7N	1.000	HMMSmart_SM00451,HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00451,HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers	-		
LOC100129958	0	genome.wustl.edu	37	6	162989826	162989826	+	Missense_Mutation	SNP	G	A	A	rs10945846	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	162989826	162989826	G	A	SNP	LOC100129958	XM_001719102	human	genbank	57_37b	+1	model	missense	c.313	p.E105K	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-		
LOC126987	126987	genome.wustl.edu	37	1	106623469	106623469	+	Missense_Mutation	SNP	G	G	C	rs61735190	byCluster;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	106623469	106623469	G	C	SNP	LOC126987	XM_002342097	human	genbank	57_37b	-1	model	missense	c.590	p.P197R	0.060	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-		
MACF1	23499	genome.wustl.edu	37	1	39853331	39853331	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	39853331	39853331	G	C	SNP	MACF1	NM_033044	human	genbank	57_37b	+1	reviewed	missense	c.10137	p.E3379D	0.959	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2	-	no_errors	
MADCAM1	8174	genome.wustl.edu	37	19	501786	501786	+	Missense_Mutation	SNP	C	C	A	rs77264553	byCluster;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	501786	501786	C	A	SNP	MADCAM1	NM_130760	human	genbank	57_37b	+1	reviewed	missense	c.785	p.P262Q	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_Adhes-Ig_like	-		
MEPCE	56257	genome.wustl.edu	37	7	100028415	100028415	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100028415	100028415	T	A	SNP	MEPCE	NM_019606	human	genbank	57_37b	+1	provisional	silent	c.774	p.T258	1.000	NULL	superfamily_SSF53335,HMMPfam_Bin3	-	no_errors	
MFSD11	79157	genome.wustl.edu	37	17	74772590	74772590	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74772590	74772590	C	T	SNP	MFSD11	NM_024311	human	genbank	57_37b	+1	provisional	silent	c.1152	p.S384	0.218	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter,HMMPfam_DUF895	-	no_errors	
MRPS30	10884	genome.wustl.edu	37	5	44809162	44809162	+	Missense_Mutation	SNP	G	G	C	rs3747479	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	44809162	44809162	G	C	SNP	MRPS30	NM_016640	human	genbank	57_37b	+1	reviewed	missense	c.98	p.C33S	0.000	HMMPfam_PDCD9	HMMPfam_PDCD9	-		
NEK8	284086	genome.wustl.edu	37	17	27068449	27068449	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27068449	27068449	G	C	SNP	NEK8	NM_178170	human	genbank	57_37b	+1	reviewed	missense	c.1910	p.W637S	1.000	superfamily_RCC1/BLIP-II	PatternScan_RCC1_1,PatternScan_RCC1_2,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_RCC1/BLIP-II,HMMPfam_RCC1	-	no_errors	
OGFR	11054	genome.wustl.edu	37	20	61440971	61440971	+	Silent	SNP	G	A	A	rs1048792	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61440971	61440971	G	A	SNP	OGFR	NM_007346	human	genbank	57_37b	+1	reviewed	silent	c.354	p.T118	0.000	HMMPfam_OGFr_N	HMMPfam_OGFr_N,HMMPfam_OGFr_III	-		
OR6C2	341416	genome.wustl.edu	37	12	55846918	55846918	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55846918	55846918	A	G	SNP	OR6C2	NM_054105	human	genbank	57_37b	+1	provisional	silent	c.921	p.A307	0.000	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PADI4	23569	genome.wustl.edu	37	1	17668843	17668843	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17668843	17668843	C	T	SNP	PADI4	NM_012387	human	genbank	57_37b	+1	reviewed	missense	c.881	p.A294V	0.995	HMMPfam_PAD,superfamily_Pentein	HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein	-	no_errors	
PALM3	342979	genome.wustl.edu	37	19	14165287	14165287	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14165287	14165287	C	T	SNP	PALM3	NM_001145028	human	genbank	57_37b	-1	validated	silent	c.1152	p.T384	0.000	NULL	NULL	-	no_errors	
PCDHB17	54661	genome.wustl.edu	37	5	140537592	140537592	+	RNA	SNP	C	C	T	rs246695	byCluster;byFrequency	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140537592	140537592	C	T	SNP	PCDHB17	NR_001280	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.997	-	-	-		
PIK3R1	5295	genome.wustl.edu	37	5	67589607	67589608	+	In_Frame_Ins	INS	-	-	AGAAAAAAGTCG	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	67589607	67589608	-	AGAAAAAAGTCG	INS	PIK3R1	NM_181523	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.1370_1371	p.461in_frame_insREKS	1.000:1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
PLXNA1	5361	genome.wustl.edu	37	3	126736736	126736736	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126736736	126736736	G	A	SNP	PLXNA1	NM_032242	human	genbank	57_37b	+1	validated	splice_site	c.3591+1	e18+1	1.000	-	-	-	no_errors	
PNPLA7	375775	genome.wustl.edu	37	9	140414410	140414410	+	Missense_Mutation	SNP	C	C	T	rs11137410	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140414410	140414410	C	T	SNP	PNPLA7	NM_001098537	human	genbank	57_37b	-1	validated	missense	c.1043	p.R348Q	0.089	NULL	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin	-		
PTCHD1	139411	genome.wustl.edu	37	X	23397729	23397729	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23397729	23397729	A	T	SNP	PTCHD1	NM_173495	human	genbank	57_37b	+1	validated	missense	c.373	p.I125F	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
SLC9A1	6548	genome.wustl.edu	37	1	27436074	27436074	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27436074	27436074	G	C	SNP	SLC9A1	NM_003047	human	genbank	57_37b	-1	validated	silent	c.1008	p.L336	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors	
SLC9A11	284525	genome.wustl.edu	37	1	173542380	173542380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173542380	173542380	G	A	SNP	SLC9A11	NM_178527	human	genbank	57_37b	-1	validated	silent	c.987	p.H329	0.010	HMMPfam_Na_H_Exchanger	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMPfam_Na_H_Exchanger,HMMPfam_Ion_trans,HMMSmart_cNMP,superfamily_cNMP_binding,HMMPfam_cNMP_binding	-	no_errors	
STARD7	56910	genome.wustl.edu	37	2	96861112	96861112	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96861112	96861112	G	A	SNP	STARD7	NM_020151	human	genbank	57_37b	-1	validated	missense	c.466	p.P156S	1.000	superfamily_SSF55961,HMMSmart_START,HMMPfam_START	superfamily_SSF55961,HMMSmart_START,HMMPfam_START	-	no_errors	
TRAPPC5	126003	genome.wustl.edu	37	19	7747293	7747293	+	Missense_Mutation	SNP	T	T	G	rs6952	byCluster;by2Hit2Allele;by1000genomes	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7747293	7747293	T	G	SNP	TRAPPC5	NM_001042461	human	genbank	57_37b	+1	validated	missense	c.154	p.S52A	1.000	HMMPfam_TRAPP	HMMPfam_TRAPP	-		
TRIP11	9321	genome.wustl.edu	37	14	92499550	92499550	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92499550	92499550	T	C	SNP	TRIP11	NM_004239	human	genbank	57_37b	-1	reviewed	missense	c.187	p.I63V	0.513	NULL	NULL	-	no_errors	
UPF1	5976	genome.wustl.edu	37	19	18965708	18965708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18965708	18965708	C	T	SNP	UPF1	NM_002911	human	genbank	57_37b	+1	reviewed	missense	c.1286	p.T429M	0.997	NULL	HMMPfam_UPF1_Zn_bind,superfamily_SSF52540,HMMPfam_ResIII	-	no_errors	
ZNF578	147660	genome.wustl.edu	37	19	53014601	53014601	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53014601	53014601	T	A	SNP	ZNF578	NM_001099694	human	genbank	57_37b	+1	validated	missense	c.967	p.S323T	0.016	superfamily_Multiheme cytochromes,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Multiheme cytochromes	-	no_errors	
ZNF878	0	genome.wustl.edu	37	19	12164066	12164066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CQ-01	TCGA-A2-A0CQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12164066	12164066	C	T	SNP	ZNF878	NM_001080404	human	genbank	57_37b	-1	inferred	silent	c.54	p.G18	0.013	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
