Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB10	23456	genome.wustl.edu	37	1	229683401	229683401	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	229683401	229683401	G	C	SNP	ABCB10	NM_012089	human	genbank	57_37b	-1	reviewed	missense	c.766	p.L256V	0.817	superfamily_ABC_TM_1,HMMPfam_ABC_membrane	superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
AHNAK	79026	genome.wustl.edu	37	11	62295540	62295540	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62295540	62295540	T	C	SNP	AHNAK	NM_001620	human	genbank	57_37b	-1	validated	missense	c.6349	p.I2117V	1.000	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC	-	no_errors	
ANPEP	290	genome.wustl.edu	37	15	90347575	90347575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90347575	90347575	C	T	SNP	ANPEP	NM_001150	human	genbank	57_37b	-1	reviewed	missense	c.1088	p.R363Q	1.000	HMMPfam_Peptidase_M1,superfamily_SSF55486	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors	
ATAD5	79915	genome.wustl.edu	37	17	29167653	29167653	+	Missense_Mutation	SNP	A	A	C	rs3764421	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29167653	29167653	A	C	SNP	ATAD5	NM_024857	human	genbank	57_37b	+1	provisional	missense	c.2095	p.N699H	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-		
CARD9	64170	genome.wustl.edu	37	9	139266359	139266359	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139266359	139266359	T	C	SNP	CARD9	NM_052813	human	genbank	57_37b	-1	validated	missense	c.172	p.K58E	1.000	superfamily_DEATH domain,HMMPfam_CARD	superfamily_DEATH domain,HMMPfam_CARD	-	no_errors	
CMYA5	202333	genome.wustl.edu	37	5	79032395	79032395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79032395	79032395	G	A	SNP	CMYA5	NM_153610	human	genbank	57_37b	+1	validated	missense	c.7807	p.A2603T	0.007	NULL	superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_SPRY	-	no_errors	
CPT1B	1375	genome.wustl.edu	37	22	51008742	51008742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	51008742	51008742	C	T	SNP	CPT1B	NM_001145135	human	genbank	57_37b	-1	reviewed	missense	c.2122	p.A708T	0.801	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors	
ENSG00000123908	0	genome.wustl.edu	37	8	141561427	141561427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	141561427	141561427	G	A	SNP	ENSG00000123908	ENST00000220592	human	ensembl	57_37b	-1	known	missense	c.1378	p.R460C	1.000	NULL	superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors	
ENSG00000246026	0	genome.wustl.edu	37	18	43666959	43666968	+	RNA	DEL	TCATTAAAAT	TCATTAAAAT	-	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	TCATTAAAAT	TCATTAAAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43666959	43666968	TCATTAAAAT	-	DEL	ENSG00000246026	ENST00000501936	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000:0.000:0.087:0.057:0.032:0.008:0.000:0.000:0.000:0.000	-	-	(deletion:rna[43664116,43668662])	no_errors	
FAM179B	23116	genome.wustl.edu	37	14	45431733	45431733	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	45431733	45431733	C	T	SNP	FAM179B	NM_015091	human	genbank	57_37b	+1	validated	nonsense	c.109	p.R37*	0.185	NULL	superfamily_ARM repeat	-	no_errors	
FAM20C	56975	genome.wustl.edu	37	7	299785	299785	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	299785	299785	G	C	SNP	FAM20C	NM_020223	human	genbank	57_37b	+1	validated	missense	c.1594	p.D532H	1.000	HMMPfam_DUF1193	HMMPfam_DUF1193	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	(deletion:intron[8106102,8111435])	no_errors	
GLTSCR2	29997	genome.wustl.edu	37	19	48258141	48258141	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48258141	48258141	A	G	SNP	GLTSCR2	NM_015710	human	genbank	57_37b	+1	validated	missense	c.1046	p.H349R	0.037	HMMPfam_Nop53	HMMPfam_Nop53	-	no_errors	
GNE	10020	genome.wustl.edu	37	9	36217480	36217480	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	36217480	36217480	C	T	SNP	GNE	NM_001128227	human	genbank	57_37b	-1	reviewed	missense	c.2144	p.R715H	1.000	superfamily_SSF53067	superfamily_SSF53756,HMMPfam_Epimerase_2,superfamily_SSF53067,HMMPfam_ROK	-	no_errors	
GOLGB1	2804	genome.wustl.edu	37	3	121415242	121415242	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121415242	121415242	C	A	SNP	GOLGB1	NM_004487	human	genbank	57_37b	-1	validated	missense	c.4113	p.Q1371H	0.961	NULL	superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340	-	no_errors	
HDGFRP2	0	genome.wustl.edu	37	19	4493708	4493708	+	Silent	SNP	A	A	G	rs892161	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4493708	4493708	A	G	SNP	HDGFRP2	NM_001001520	human	genbank	57_37b	+1	reviewed	silent	c.687	p.P229	0.001	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293	-		
HECW2	57520	genome.wustl.edu	37	2	197183859	197183859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	197183859	197183859	G	A	SNP	HECW2	NM_020760	human	genbank	57_37b	-1	provisional	silent	c.1755	p.S585	0.000	NULL	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HS2ST1	9653	genome.wustl.edu	37	1	87549897	87549897	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	87549897	87549897	A	G	SNP	HS2ST1	NM_012262	human	genbank	57_37b	+1	reviewed	missense	c.384	p.I128M	1.000	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
LOC100287342	0	genome.wustl.edu	37	7	5645116	5645116	+	Missense_Mutation	SNP	T	T	C	rs116036920	by1000genomes	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5645116	5645116	T	C	SNP	LOC100287342	XM_002342693	human	genbank	57_37b	-1	model	missense	c.23	p.D8G	0.004	NULL	NULL	-		
LOH12CR1	118426	genome.wustl.edu	37	12	12618690	12618690	+	Missense_Mutation	SNP	G	G	A	rs3751262	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12618690	12618690	G	A	SNP	LOH12CR1	NM_058169	human	genbank	57_37b	+1	validated	missense	c.571	p.D191N	0.966	HMMPfam_LOH1CR12	HMMPfam_LOH1CR12	-		
LRBA	987	genome.wustl.edu	37	4	151223818	151223818	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151223818	151223818	T	C	SNP	LRBA	NM_006726	human	genbank	57_37b	-1	validated	missense	c.8009	p.Y2670C	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
NTNG2	84628	genome.wustl.edu	37	9	135073967	135073967	+	Silent	SNP	C	C	T	rs3739930	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135073967	135073967	C	T	SNP	NTNG2	NM_032536	human	genbank	57_37b	+1	validated	silent	c.828	p.Y276	0.704	HMMSmart_SM00136,HMMPfam_Laminin_N	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2	-		
OR10AD1	121275	genome.wustl.edu	37	12	48597053	48597053	+	Missense_Mutation	SNP	A	A	G	rs17122812	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48597053	48597053	A	G	SNP	OR10AD1	NM_001004134	human	genbank	57_37b	-1	provisional	missense	c.23	p.V8A	0.680	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
PCDHA12	56137	genome.wustl.edu	37	5	140256806	140256806	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140256806	140256806	G	A	SNP	PCDHA12	NM_018903	human	genbank	57_37b	+1	reviewed	silent	c.1749	p.R583	0.000	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCNT	5116	genome.wustl.edu	37	21	47811272	47811272	+	Silent	SNP	C	C	T	rs3737438	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47811272	47811272	C	T	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	silent	c.4197	p.D1399	0.000	NULL	HMMPfam_PACT_coil_coil	-		
PIGQ	9091	genome.wustl.edu	37	16	624713	624713	+	Silent	SNP	C	C	T	rs4984669	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	624713	624713	C	T	SNP	PIGQ	NM_148920	human	genbank	57_37b	+1	reviewed	silent	c.639	p.C213	0.996	NULL	HMMPfam_Gpi1	-		
ROBO1	6091	genome.wustl.edu	37	3	78719385	78719385	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	78719385	78719385	C	G	SNP	ROBO1	NM_002941	human	genbank	57_37b	-1	reviewed	missense	c.1409	p.G470A	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
SNTA1	6640	genome.wustl.edu	37	20	31996318	31996318	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31996318	31996318	C	A	SNP	SNTA1	NM_003098	human	genbank	57_37b	-1	reviewed	missense	c.1513	p.A505S	1.000	NULL	HMMSmart_SM00233,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMPfam_PH	-	no_errors	
SYT16	83851	genome.wustl.edu	37	14	62536500	62536500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	62536500	62536500	G	A	SNP	SYT16	NM_031914	human	genbank	57_37b	+1	validated	missense	c.703	p.G235R	0.023	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
SYT5	6861	genome.wustl.edu	37	19	55690340	55690340	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55690340	55690340	G	A	SNP	SYT5	NM_003180	human	genbank	57_37b	-1	validated	missense	c.70	p.H24Y	0.568	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
TMEM132D	121256	genome.wustl.edu	37	12	129569107	129569107	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	129569107	129569107	G	A	SNP	TMEM132D	NM_133448	human	genbank	57_37b	-1	validated	silent	c.1584	p.I528	0.004	NULL	NULL	-	no_errors	
TTK	7272	genome.wustl.edu	37	6	80746264	80746264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	80746264	80746264	G	A	SNP	TTK	NM_003318	human	genbank	57_37b	+1	reviewed	missense	c.1997	p.G666E	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
TUBA1C	84790	genome.wustl.edu	37	12	49666122	49666122	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49666122	49666122	G	T	SNP	TUBA1C	NM_032704	human	genbank	57_37b	+1	provisional	missense	c.462	p.M154I	1.000	superfamily_Tubulin_FtsZ,HMMPfam_Tubulin	superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-	no_errors	
VWA3A	146177	genome.wustl.edu	37	16	22143005	22143005	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CV-01	TCGA-A2-A0CV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	22143005	22143005	G	A	SNP	VWA3A	NM_173615	human	genbank	57_37b	+1	validated	silent	c.1827	p.S609	0.030	superfamily_vWA-like	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	-	no_errors	
