Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACLY	47	genome.wustl.edu	37	17	40030163	40030163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40030163	40030163	C	T	SNP	ACLY	NM_001096	human	genbank	57_37b	-1	reviewed	missense	c.2543	p.R848Q	1.000	superfamily_Citrate_synthase_core	superfamily_SSF56059,superfamily_CoA_ligase,PatternScan_SUCCINYL_COA_LIG_3,superfamily_NAD(P)-bd,HMMPfam_CoA_binding,superfamily_Citrate_synthase_core,HMMPfam_Ligase_CoA,PatternScan_SUCCINYL_COA_LIG_1,PatternScan_SUCCINYL_COA_LIG_2	-	no_errors	
AMBP	259	genome.wustl.edu	37	9	116823771	116823771	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116823771	116823771	G	A	SNP	AMBP	NM_001633	human	genbank	57_37b	-1	reviewed	silent	c.786	p.G262	0.941	superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	superfamily_Calycin,PatternScan_LIPOCALIN,HMMPfam_Lipocalin,superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors	
AOC3	8639	genome.wustl.edu	37	17	41008381	41008381	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41008381	41008381	C	T	SNP	AOC3	NM_003734	human	genbank	57_37b	+1	reviewed	silent	c.2106	p.G702	1.000	superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxid	superfamily_Cu_amine_oxidase_N-reg,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2	-	no_errors	
ATG2A	23130	genome.wustl.edu	37	11	64680801	64680801	+	Missense_Mutation	SNP	G	G	A	rs61744001	byCluster;byFrequency;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64680801	64680801	G	A	SNP	ATG2A	ENST00000418259	human	ensembl	57_37b	-1	known	missense	c.67	p.L23F	1.000	NULL	PatternScan_OX2_COVAL_FAD,HMMPfam_ATG_C,PatternScan_ADH_ZINC	-		
ATP9A	10079	genome.wustl.edu	37	20	50235558	50235558	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	50235558	50235558	G	A	SNP	ATP9A	NM_006045	human	genbank	57_37b	-1	validated	missense	c.2140	p.L714F	1.000	superfamily_HAD-like,HMMPfam_Hydrolase	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
BRDT	676	genome.wustl.edu	37	1	92445220	92445220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	92445220	92445220	G	A	SNP	BRDT	NM_001726	human	genbank	57_37b	+1	validated	missense	c.1193	p.G398D	0.126	NULL	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
C19orf44	84167	genome.wustl.edu	37	19	16611796	16611796	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16611796	16611796	A	C	SNP	C19orf44	NM_032207	human	genbank	57_37b	+1	validated	missense	c.193	p.K65Q	0.000	NULL	NULL	-	no_errors	
C1orf222	339457	genome.wustl.edu	37	1	1854109	1854109	+	Silent	SNP	A	A	G	rs2803348	byCluster;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1854109	1854109	A	G	SNP	C1orf222	ENST00000378596	human	ensembl	57_37b	-1	known	silent	c.735	p.S245	0.071	NULL	NULL	-		
CCM2	83605	genome.wustl.edu	37	7	45113170	45113170	+	Silent	SNP	G	A	A	rs2289367	byCluster;byFrequency;bySubmitter;byHapMap;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45113170	45113170	G	A	SNP	CCM2	NM_001029835	human	genbank	57_37b	+1	reviewed	silent	c.978	p.T326	0.999	NULL	NULL	-		
CEP76	79959	genome.wustl.edu	37	18	12697393	12697393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12697393	12697393	T	C	SNP	CEP76	NM_024899	human	genbank	57_37b	-1	provisional	missense	c.535	p.M179V	1.000	NULL	PatternScan_WD_REPEATS_1	-	no_errors	
CFTR	1080	genome.wustl.edu	37	7	117305522	117305530	+	In_Frame_Del	DEL	AATAATTAG	AATAATTAG	-	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	AATAATTAG	AATAATTAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	117305522	117305530	AATAATTAG	-	DEL	CFTR	NM_000492	human	genbank	57_37b	+1	reviewed	in_frame_del	c.4146_4154	p.IIR1383in_frame_del	0.997:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	(deletion:cds_exon[117305513,117305618])	no_errors	
CIT	11113	genome.wustl.edu	37	12	120146063	120146063	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120146063	120146063	G	A	SNP	CIT	NM_007174	human	genbank	57_37b	-1	validated	missense	c.5006	p.S1669F	1.000	HMMSmart_SM00036,HMMPfam_CNH	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,PatternScan_CPSASE_2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
CSMD1	64478	genome.wustl.edu	37	8	3216673	3216673	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	3216673	3216673	C	T	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	splice_site	c.3307+1	e21+1	1.000	-	-	-	no_errors	
DMRTA1	63951	genome.wustl.edu	37	9	22451646	22451646	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	22451646	22451646	T	A	SNP	DMRTA1	NM_022160	human	genbank	57_37b	+1	validated	silent	c.1251	p.A417	0.683	NULL	superfamily_DM_DNA_bd,HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,HMMPfam_DMA	-	no_errors	
DYNC2H1	79659	genome.wustl.edu	37	11	103055626	103055626	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	103055626	103055626	A	G	SNP	DYNC2H1	NM_001080463	human	genbank	57_37b	+1	reviewed	missense	c.6479	p.N2160S	1.000	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DYRK2	8445	genome.wustl.edu	37	12	68051820	68051820	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	68051820	68051820	G	T	SNP	DYRK2	NM_006482	human	genbank	57_37b	+1	reviewed	missense	c.1133	p.R378L	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
EFNB1	1947	genome.wustl.edu	37	X	68060260	68060260	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	68060260	68060260	G	A	SNP	EFNB1	NM_004429	human	genbank	57_37b	+1	reviewed	silent	c.804	p.R268	0.982	NULL	HMMPfam_Ephrin,superfamily_Cupredoxin,PatternScan_EPHRIN	-	no_errors	
ENSG00000207049	0	genome.wustl.edu	37	2	237061782	237061782	+	RNA	SNP	A	A	G	rs7420494	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	237061782	237061782	A	G	SNP	ENSG00000207049	ENST00000384322	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.006	-	-	-		
EPHB3	2049	genome.wustl.edu	37	3	184299398	184299398	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	184299398	184299398	T	C	SNP	EPHB3	NM_004443	human	genbank	57_37b	+1	reviewed	silent	c.2985	p.P995	0.091	NULL	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
FAT2	2196	genome.wustl.edu	37	5	150925419	150925419	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150925419	150925419	T	C	SNP	FAT2	NM_001447	human	genbank	57_37b	-1	reviewed	missense	c.5269	p.M1757V	0.000	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors	
FAT3	120114	genome.wustl.edu	37	11	92543074	92543074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92543074	92543074	G	A	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	missense	c.9313	p.A3105T	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors	
FNDC7	163479	genome.wustl.edu	37	1	109271347	109271347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109271347	109271347	C	T	SNP	FNDC7	NM_001144937	human	genbank	57_37b	+1	provisional	missense	c.1463	p.T488M	0.880	HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060	-	no_errors	
GPIHBP1	338328	genome.wustl.edu	37	8	144297269	144297269	+	Missense_Mutation	SNP	C	C	T	rs78367243	byCluster;byFrequency;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144297269	144297269	C	T	SNP	GPIHBP1	NM_178172	human	genbank	57_37b	+1	validated	missense	c.431	p.S144F	0.002	HMMSmart_LU	superfamily_SSF57302,HMMSmart_LU,HMMPfam_UPAR_LY6	-		
HDAC9	9734	genome.wustl.edu	37	7	18801793	18801793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	18801793	18801793	G	T	SNP	HDAC9	NM_178425	human	genbank	57_37b	+1	reviewed	missense	c.2057	p.R686L	1.000	superfamily_SSF52768,HMMPfam_Hist_deacetyl	superfamily_SSF52768,HMMPfam_Hist_deacetyl	-	no_errors	
HIVEP3	59269	genome.wustl.edu	37	1	41979156	41979156	+	Silent	SNP	A	A	G	rs615177	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	41979156	41979156	A	G	SNP	HIVEP3	NM_024503	human	genbank	57_37b	-1	validated	silent	c.5736	p.A1912	0.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-		
HR	55806	genome.wustl.edu	37	8	21984945	21984945	+	Missense_Mutation	SNP	C	C	T	rs12675375	byCluster;byHapMap;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	21984945	21984945	C	T	SNP	HR	NM_005144	human	genbank	57_37b	-1	reviewed	missense	c.1010	p.G337D	0.005	NULL	HMMSmart_SM00558,HMMPfam_JmjC	-		
IRF1	3659	genome.wustl.edu	37	5	131822133	131822133	+	Silent	SNP	T	C	C	rs9282763	byCluster;byFrequency;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	131822133	131822133	T	C	SNP	IRF1	ENST00000421011	human	ensembl	57_37b	-1	known	silent	c.423	p.G141	0.000	NULL	NULL	-		
ITGA2B	3674	genome.wustl.edu	37	17	42454377	42454377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42454377	42454377	C	T	SNP	ITGA2B	NM_000419	human	genbank	57_37b	-1	reviewed	missense	c.2267	p.S756N	1.000	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
ITGA8	8516	genome.wustl.edu	37	10	15628600	15628600	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15628600	15628600	C	T	SNP	ITGA8	NM_003638	human	genbank	57_37b	-1	provisional	silent	c.2355	p.A785	0.924	HMMPfam_Integrin_alpha2,superfamily_SSF69179	superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
KIAA1530	57654	genome.wustl.edu	37	4	1374695	1374695	+	Silent	SNP	C	C	A	rs28614045	byCluster;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1374695	1374695	C	A	SNP	KIAA1530	NM_020894	human	genbank	57_37b	+1	validated	silent	c.1780	p.R594	0.947	HMMPfam_DUF2043	HMMPfam_DUF2043	-		
KLHL26	55295	genome.wustl.edu	37	19	18775077	18775077	+	Silent	SNP	C	C	T	rs1076235	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18775077	18775077	C	T	SNP	KLHL26	NM_018316	human	genbank	57_37b	+1	provisional	silent	c.90	p.A30	0.025	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1	-		
LOC100128717	0	genome.wustl.edu	37	17	22192695	22192695	+	RNA	SNP	A	A	G	rs34705075	byCluster;byFrequency;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	22192695	22192695	A	G	SNP	LOC100128717	XR_037607	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.819	-	-	-		
LOC642236	642236	genome.wustl.edu	37	9	68430233	68430233	+	RNA	SNP	T	T	G	rs4296242	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	68430233	68430233	T	G	SNP	LOC642236	XR_041085	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-		
LOC729668	729668	genome.wustl.edu	37	10	30663368	30663368	+	RNA	SNP	T	T	C	rs2297039	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	30663368	30663368	T	C	SNP	LOC729668	NR_003524	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.168	-	-	-		
MLL3	58508	genome.wustl.edu	37	7	151896496	151896496	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151896496	151896496	T	C	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	missense	c.4141	p.I1381V	0.927	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MORN5	254956	genome.wustl.edu	37	9	124936830	124936830	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124936830	124936830	C	T	SNP	MORN5	NM_198469	human	genbank	57_37b	+1	validated	silent	c.363	p.Y121	0.977	superfamily_SSF82185	superfamily_SSF82185,HMMSmart_MORN,HMMPfam_MORN	-	no_errors	
MOV10L1	54456	genome.wustl.edu	37	22	50553671	50553671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50553671	50553671	G	A	SNP	MOV10L1	NM_018995	human	genbank	57_37b	+1	reviewed	missense	c.1255	p.G419R	0.948	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
NANOS3	342977	genome.wustl.edu	37	19	13988416	13988416	+	Silent	SNP	A	A	G	rs2016163	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13988416	13988416	A	G	SNP	NANOS3	NM_001098622	human	genbank	57_37b	+1	provisional	silent	c.354	p.T118	0.015	HMMPfam_zf-nanos	HMMPfam_zf-nanos	-		
NBEAL2	23218	genome.wustl.edu	37	3	47036756	47036756	+	Missense_Mutation	SNP	C	C	G	rs11720139	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47036756	47036756	C	G	SNP	NBEAL2	NM_015175	human	genbank	57_37b	+1	validated	missense	c.1531	p.R511G	0.984	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-		
NUP210	23225	genome.wustl.edu	37	3	13368892	13368892	+	Silent	SNP	G	G	A	rs2271509	byCluster;byFrequency;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13368892	13368892	G	A	SNP	NUP210	NM_024923	human	genbank	57_37b	-1	reviewed	silent	c.4332	p.C1444	0.211	NULL	superfamily_Invasin/intimin cell-adhesion fragments,HMMPfam_Big_2,HMMSmart_SM00635	-		
OGDHL	55753	genome.wustl.edu	37	10	50966465	50966465	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50966465	50966465	G	A	SNP	OGDHL	NM_018245	human	genbank	57_37b	-1	validated	silent	c.174	p.A58	0.996	NULL	superfamily_SSF52518,HMMPfam_E1_dh,HMMPfam_Transket_pyr	-	no_errors	
OR51A2	401667	genome.wustl.edu	37	11	4976683	4976683	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4976683	4976683	G	A	SNP	OR51A2	NM_001004748	human	genbank	57_37b	-1	provisional	silent	c.261	p.F87	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR52E4	390081	genome.wustl.edu	37	11	5905807	5905807	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5905807	5905807	C	T	SNP	OR52E4	NM_001005165	human	genbank	57_37b	+1	provisional	silent	c.285	p.S95	0.006	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHGB2	56103	genome.wustl.edu	37	5	140740551	140740551	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140740551	140740551	T	C	SNP	PCDHGB2	NM_018923	human	genbank	57_37b	+1	reviewed	silent	c.849	p.N283	0.001	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PHACTR1	221692	genome.wustl.edu	37	6	13230284	13230286	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	13230284	13230286	AGG	-	DEL	PHACTR1	NM_030948	human	genbank	57_37b	+1	validated	in_frame_del	c.1250_1252	p.KV417in_frame_delI	1.000:1.000:1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	(deletion:cds_exon[13230269,13230425])	no_errors	
PPM1H	57460	genome.wustl.edu	37	12	63042385	63042385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	63042385	63042385	G	A	SNP	PPM1H	NM_020700	human	genbank	57_37b	-1	validated	missense	c.1429	p.R477C	1.000	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C	-	no_errors	
PREX1	57580	genome.wustl.edu	37	20	47342884	47342884	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47342884	47342884	C	A	SNP	PREX1	NM_020820	human	genbank	57_37b	-1	reviewed	missense	c.564	p.L188F	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors	
PTEN	5728	genome.wustl.edu	37	10	89685293	89685298	+	In_Frame_Del	DEL	ACCATT	ACCATT	-	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	ACCATT	ACCATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89685293	89685298	ACCATT	-	DEL	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	in_frame_del	c.188_193	p.HY64in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[89685270,89685314])	no_errors	
SALL3	27164	genome.wustl.edu	37	18	76754367	76754367	+	Silent	SNP	C	T	T	rs2927258	byCluster;byFrequency;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	76754367	76754367	C	T	SNP	SALL3	NM_171999	human	genbank	57_37b	+1	validated	silent	c.2376	p.T792	0.067	NULL	HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-		
SIN3B	23309	genome.wustl.edu	37	19	16962240	16962240	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16962240	16962240	G	A	SNP	SIN3B	NM_015260	human	genbank	57_37b	+1	provisional	silent	c.744	p.P248	0.005	NULL	superfamily_PAH2 domain,HMMPfam_PAH,HMMPfam_HDAC_interact,HMMSmart_SM00761	-	no_errors	
SLC22A20	440044	genome.wustl.edu	37	11	64981853	64981853	+	Missense_Mutation	SNP	G	G	T	rs239259	byCluster;byFrequency;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64981853	64981853	G	T	SNP	SLC22A20	NM_001004326	human	genbank	57_37b	+1	validated	missense	c.438	p.M146I	1.000	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-		
SLC6A4	6532	genome.wustl.edu	37	17	28545941	28545941	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	28545941	28545941	G	A	SNP	SLC6A4	NM_001045	human	genbank	57_37b	-1	reviewed	missense	c.352	p.L118F	1.000	HMMPfam_SNF	HMMPfam_5HT_transporter,HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors	
SORBS2	8470	genome.wustl.edu	37	4	186544158	186544158	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186544158	186544158	A	T	SNP	SORBS2	NM_021069	human	genbank	57_37b	-1	reviewed	missense	c.2413	p.C805S	0.444	NULL	HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
TMC3	342125	genome.wustl.edu	37	15	81624768	81624768	+	Missense_Mutation	SNP	C	C	T	rs4417518	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	81624768	81624768	C	T	SNP	TMC3	NM_001080532	human	genbank	57_37b	-1	provisional	missense	c.3295	p.D1099N	0.275	NULL	HMMPfam_TMC	-		
TP53	7157	genome.wustl.edu	37	17	7579343	7579351	+	In_Frame_Del	DEL	TGCAAGAAG	TGCAAGAAG	-	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	TGCAAGAAG	TGCAAGAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579343	7579351	TGCAAGAAG	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	in_frame_del	c.344_336	p.FLH113in_frame_del	0.930:0.938:0.948:0.998:1.000:1.000:1.000:0.999:0.805	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7579312,7579590])	no_errors	
VKORC1	79001	genome.wustl.edu	37	16	31104727	31104727	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0SV-01	TCGA-A2-A0SV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31104727	31104727	G	A	SNP	VKORC1	ENST00000498155	human	ensembl	57_37b	-1	known	missense	c.286	p.R96W	0.840	NULL	NULL	-	no_errors	
