Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACCN4	55515	broad.mit.edu	37	2	220396729	220396729	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118068750	118068750	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP5A1	498	broad.mit.edu	37	18	43666148	43666148	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32915021	32915021	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf68	79741	broad.mit.edu	37	10	33134530	33134530	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12820749	12820749	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146650343	146650343	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12833177	12833177	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CARD9	64170	broad.mit.edu	37	9	139266450	139266450	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCKAR	886	broad.mit.edu	37	4	26483745	26483745	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227213828	227213828	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193119512	193119512	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDK13	8621	broad.mit.edu	37	7	40085608	40085608	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CERCAM	51148	broad.mit.edu	37	9	131196482	131196483	+	Missense_Mutation	DNP	GG	TT	TT	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNNM3	26505	broad.mit.edu	37	2	97483238	97483238	+	Silent	SNP	A	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36730739	36730739	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4495044	4495044	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTDSPL2	51496	broad.mit.edu	37	15	44751276	44751276	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYB5R1	51706	broad.mit.edu	37	1	202932260	202932260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39075474	39075474	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172480526	172480526	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55087029	55087029	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ELP3	55140	broad.mit.edu	37	8	27970578	27970578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89837084	89837084	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXL16	146330	broad.mit.edu	37	16	745593	745593	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157556209	157556209	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GOLPH3	64083	broad.mit.edu	37	5	32126354	32126354	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142737063	142737063	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240048264	240048264	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IKBKG	8517	broad.mit.edu	37	X	153770607	153770607	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1539240	1539240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KANK3	256949	broad.mit.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	-	-	rs79105740	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	TCGCTGTCGCCA	TCGCTGTCGCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200954092	200954092	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLRC1	3821	broad.mit.edu	37	12	10599220	10599220	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38484964	38484964	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP3K7	6885	broad.mit.edu	37	6	91228282	91228282	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138678736	138678736	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MKNK2	2872	broad.mit.edu	37	19	2041152	2041152	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2530196	2530196	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NICN1	84276	broad.mit.edu	37	3	49466658	49466658	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203465362	203465362	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52598242	52598242	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PGLYRP2	114770	broad.mit.edu	37	19	15587107	15587107	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PROX1	5629	broad.mit.edu	37	1	214170133	214170133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121653811	121653811	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52359592	52359592	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47059132	47059132	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETMAR	6419	broad.mit.edu	37	3	4355062	4355062	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
THAP9	79725	broad.mit.edu	37	4	83839153	83839153	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLR7	51284	broad.mit.edu	37	X	12906241	12906241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20039633	20039633	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142626641	142626641	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC15	51112	broad.mit.edu	37	2	3391616	3391616	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179399168	179399168	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110428228	110428228	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WNT9A	7483	broad.mit.edu	37	1	228112054	228112054	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6021491	6021491	+	Missense_Mutation	SNP	G	A	A	rs112285134	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
XRCC6BP1	91419	broad.mit.edu	37	12	58340855	58340855	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZCCHC6	79670	broad.mit.edu	37	9	88938317	88938317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44805139	44805139	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF493	284443	broad.mit.edu	37	19	21607620	21607620	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3311-01	TCGA-A3-3311-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
