Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADCY8	114	broad.mit.edu	37	8	131896886	131896886	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243859018	243859018	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31599818	31599818	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf71	118461	broad.mit.edu	37	10	50532622	50532622	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C17orf75	64149	broad.mit.edu	37	17	30665271	30665271	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37650846	37650846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18028205	18028205	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CERK	64781	broad.mit.edu	37	22	47116101	47116101	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNOT10	25904	broad.mit.edu	37	3	32775009	32775009	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40844591	40844591	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3691555	3691555	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3502638	3502638	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111409738	111409745	+	Frame_Shift_Del	DEL	AATCTTTT	-	-	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	AATCTTTT	AATCTTTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120569905	120569905	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM55D	54827	broad.mit.edu	37	11	114451052	114451052	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172046778	172046778	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GAS8	2622	broad.mit.edu	37	16	90099333	90099333	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27506762	27506762	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65184580	65184580	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100129224	100129224	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIST1H2AJ	8331	broad.mit.edu	37	6	27782408	27782408	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HLA-F	3134	broad.mit.edu	37	6	29694668	29694668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HMGN2	3151	broad.mit.edu	37	1	26801118	26801118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSP90B1	7184	broad.mit.edu	37	12	104332226	104332226	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67861487	67861487	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IQCG	84223	broad.mit.edu	37	3	197670838	197670838	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF18B	146909	broad.mit.edu	37	17	43011776	43011776	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201354881	201354881	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235922372	235922372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MICALL2	79778	broad.mit.edu	37	7	1487214	1487214	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLX	6945	broad.mit.edu	37	17	40722038	40722038	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71368393	71368393	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48032817	48032817	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTA3	57504	broad.mit.edu	37	2	42909669	42909669	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NIT2	56954	broad.mit.edu	37	3	100058770	100058770	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRBP1	29959	broad.mit.edu	37	2	27663340	27663340	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154027277	154027278	+	Missense_Mutation	DNP	TT	GA	GA	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52610585	52610585	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47769001	47769001	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104208221	104208222	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57185310	57185310	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170345788	170345788	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPH1	65059	broad.mit.edu	37	2	204356027	204356027	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPS3A	6189	broad.mit.edu	37	4	152022142	152022142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SDR16C5	195814	broad.mit.edu	37	8	57219234	57219234	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SGCE	8910	broad.mit.edu	37	7	94257637	94257637	+	Silent	SNP	T	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67101650	67101650	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC23A1	9963	broad.mit.edu	37	5	138715429	138715429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11098575	11098575	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM187	8269	broad.mit.edu	37	X	153247610	153247610	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2132493	2132493	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113194723	113194723	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38816289	38816289	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
YME1L1	10730	broad.mit.edu	37	10	27431334	27431334	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZBTB26	57684	broad.mit.edu	37	9	125681478	125681478	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZCCHC2	54877	broad.mit.edu	37	18	60241796	60241796	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF551	90233	broad.mit.edu	37	19	58198816	58198816	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF615	284370	broad.mit.edu	37	19	52496685	52496685	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52618981	52618981	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF654	55279	broad.mit.edu	37	3	88189697	88189697	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF792	126375	broad.mit.edu	37	19	35449309	35449309	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3322-01	TCGA-A3-3322-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
