Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AFG3L2	10939	broad.mit.edu	37	18	12367034	12367034	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AP3M2	10947	broad.mit.edu	37	8	42015561	42015561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141051674	141051674	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47538705	47538705	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BYSL	705	broad.mit.edu	37	6	41889389	41889389	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf198	84886	broad.mit.edu	37	1	230991424	230991424	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C7orf45	136263	broad.mit.edu	37	7	129847772	129847772	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCNB2	9133	broad.mit.edu	37	15	59407028	59407028	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55846863	55846863	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120196473	120196473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CRYM	1428	broad.mit.edu	37	16	21272606	21272606	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DLL4	54567	broad.mit.edu	37	15	41222315	41222315	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124420000	124420000	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAJB4	11080	broad.mit.edu	37	1	78481792	78481792	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM73B	84895	broad.mit.edu	37	9	131804663	131804663	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GBP1	2633	broad.mit.edu	37	1	89523725	89523725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58010243	58010243	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93301996	93301996	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GOLGA6A	342096	broad.mit.edu	37	15	74365099	74365099	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43484071	43484071	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSPA9	3313	broad.mit.edu	37	5	137902359	137902359	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54798566	54798566	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53240782	53240782	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLHL25	64410	broad.mit.edu	37	15	86312287	86312287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MBD6	114785	broad.mit.edu	37	12	57920770	57920770	+	Silent	SNP	T	G	G	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136633848	136633848	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRPS24	64951	broad.mit.edu	37	7	43906364	43906364	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100686874	100686874	+	Silent	SNP	T	G	G	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NKD2	85409	broad.mit.edu	37	5	1032288	1032288	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139417569	139417569	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OLFML3	56944	broad.mit.edu	37	1	114523687	114523687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5968684	5968684	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52685756	52685756	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PECI	10455	broad.mit.edu	37	6	4116161	4116161	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POPDC2	64091	broad.mit.edu	37	3	119378938	119378938	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSAT1	29968	broad.mit.edu	37	9	80923397	80923397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198687389	198687389	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103130250	103130250	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66795006	66795006	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPS18	6222	broad.mit.edu	37	6	33243970	33243970	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622777	38622777	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC29A4	222962	broad.mit.edu	37	7	5330777	5330777	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC37A1	54020	broad.mit.edu	37	21	43967224	43967224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220493280	220493280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77417087	77417087	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSPAN1	10103	broad.mit.edu	37	1	46650927	46650927	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTYH1	57348	broad.mit.edu	37	19	54942314	54942314	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP22	23326	broad.mit.edu	37	17	20931913	20931913	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZCCHC3	85364	broad.mit.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	-	-	rs5742258	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	CGG	CGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF653	115950	broad.mit.edu	37	19	11596575	11596575	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF800	168850	broad.mit.edu	37	7	127014261	127014261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3323-01	TCGA-A3-3323-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
