Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACVR1B	91	hgsc.bcm.edu	37	12	52374878	52374878	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATM	472	hgsc.bcm.edu	37	11	108199882	108199882	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRMS1L	84312	hgsc.bcm.edu	37	14	36300620	36300620	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C10orf79	80217	hgsc.bcm.edu	37	10	105952029	105952029	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C17orf53	78995	hgsc.bcm.edu	37	17	42225574	42225574	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C17orf80	55028	hgsc.bcm.edu	37	17	71232490	71232490	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C4orf27	54969	hgsc.bcm.edu	37	4	170663135	170663135	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C7orf46	340277	hgsc.bcm.edu	37	7	23728936	23728936	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CAPRIN2	65981	hgsc.bcm.edu	37	12	30868061	30868061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CASP8AP2	9994	hgsc.bcm.edu	37	6	90576681	90576681	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCT6B	10693	hgsc.bcm.edu	37	17	33257989	33257989	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHN1	1123	hgsc.bcm.edu	37	2	175666459	175666459	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL4A6	1288	hgsc.bcm.edu	37	X	107457373	107457373	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CYP2J2	1573	hgsc.bcm.edu	37	1	60359336	60359336	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DDX50	79009	hgsc.bcm.edu	37	10	70670871	70670871	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAJC5G	285126	hgsc.bcm.edu	37	2	27503057	27503057	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EI24	9538	hgsc.bcm.edu	37	11	125447465	125447465	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EIF2AK1	27102	hgsc.bcm.edu	37	7	6085728	6085728	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EPB41L4A	64097	hgsc.bcm.edu	37	5	111504700	111504700	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM47B	170062	hgsc.bcm.edu	37	X	34961787	34961787	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FZD4	8322	hgsc.bcm.edu	37	11	86662562	86662562	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GYS1	2997	hgsc.bcm.edu	37	19	49477487	49477487	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HEATR5B	54497	hgsc.bcm.edu	37	2	37215934	37215934	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HSD17B6	8630	hgsc.bcm.edu	37	12	57178697	57178697	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HSPA4L	22824	hgsc.bcm.edu	37	4	128729255	128729255	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IBTK	25998	hgsc.bcm.edu	37	6	82922424	82922424	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ILF2	3608	hgsc.bcm.edu	37	1	153637769	153637769	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNAB1	7881	hgsc.bcm.edu	37	3	156009745	156009745	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LBR	3930	hgsc.bcm.edu	37	1	225592347	225592347	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LYVE1	10894	hgsc.bcm.edu	37	11	10580685	10580685	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAOA	4128	hgsc.bcm.edu	37	X	43572008	43572008	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAP4K3	8491	hgsc.bcm.edu	37	2	39494355	39494355	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MCC	4163	hgsc.bcm.edu	37	5	112458491	112458491	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MCM3	4172	hgsc.bcm.edu	37	6	52129392	52129392	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MDC1	9656	hgsc.bcm.edu	37	6	30671996	30671996	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC16	94025	hgsc.bcm.edu	37	19	9084742	9084742	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195507129	195507129	+	Silent	SNP	G	G	T	rs74201433	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NBAS	51594	hgsc.bcm.edu	37	2	15564502	15564502	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NHEJ1	79840	hgsc.bcm.edu	37	2	219942000	219942000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NLRP4	147945	hgsc.bcm.edu	37	19	56388492	56388492	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NUP210L	91181	hgsc.bcm.edu	37	1	154031095	154031095	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PAIP1	10605	hgsc.bcm.edu	37	5	43555944	43555944	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52649414	52649414	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLA1A	51365	hgsc.bcm.edu	37	3	119336888	119336888	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLCB4	5332	hgsc.bcm.edu	37	20	9365020	9365020	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLEKHA5	54477	hgsc.bcm.edu	37	12	19518904	19518904	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
POT1	25913	hgsc.bcm.edu	37	7	124487019	124487019	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PSMA2	5683	hgsc.bcm.edu	37	7	42964318	42964318	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
R3HDM2	22864	hgsc.bcm.edu	37	12	57648628	57648628	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPS6KA6	27330	hgsc.bcm.edu	37	X	83357197	83357197	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMAD4	4089	hgsc.bcm.edu	37	18	48593405	48593405	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMARCB1	6598	hgsc.bcm.edu	37	22	24158955	24158955	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SOX5	6660	hgsc.bcm.edu	37	12	23728684	23728684	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPHKAP	80309	hgsc.bcm.edu	37	2	228882779	228882779	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPTBN4	57731	hgsc.bcm.edu	37	19	41073957	41073958	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TOP1	7150	hgsc.bcm.edu	37	20	39744051	39744051	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179468975	179468975	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TUBG1	7283	hgsc.bcm.edu	37	17	40764132	40764132	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UHRF2	115426	hgsc.bcm.edu	37	9	6420988	6420988	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP25	29761	hgsc.bcm.edu	37	21	17250186	17250186	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188321	10188321	+	Splice_Site	SNP	G	G	C	rs5030814	byCluster	TCGA-A3-3362-01	TCGA-A3-3362-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDFY3	23001	hgsc.bcm.edu	37	4	85717847	85717847	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZIK1	284307	hgsc.bcm.edu	37	19	58102358	58102358	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A3-3362-01	TCGA-A3-3362-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
