Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANGPTL4	51129	broad.mit.edu	37	19	8429515	8429515	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14751238	14751238	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176993851	176993851	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119204736	119204736	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BDH1	622	broad.mit.edu	37	3	197238941	197238941	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BMP3	651	broad.mit.edu	37	4	81952663	81952663	+	Silent	SNP	A	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf35	219738	broad.mit.edu	37	10	71392632	71392632	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C2orf47	79568	broad.mit.edu	37	2	200826508	200826508	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCT8	10694	broad.mit.edu	37	21	30442608	30442608	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80097056	80097056	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYP1A1	1543	broad.mit.edu	37	15	75013623	75013623	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51758414	51758414	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7630455	7630455	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAJA4	55466	broad.mit.edu	37	15	78572439	78572439	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41566499	41566499	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPHB4	2050	broad.mit.edu	37	7	100401094	100401094	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ERCC2	2068	broad.mit.edu	37	19	45857991	45857991	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM50B	26240	broad.mit.edu	37	6	3850568	3850568	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84608721	84608721	+	Missense_Mutation	SNP	C	A	A	rs12340292	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171244561	171244561	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FMO5	2330	broad.mit.edu	37	1	146696569	146696569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FRZB	2487	broad.mit.edu	37	2	183731161	183731161	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11470318	11470318	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22437012	22437012	+	Silent	SNP	A	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIF3A	64344	broad.mit.edu	37	19	46811988	46811988	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIPK2	28996	broad.mit.edu	37	7	139281488	139281488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSF5	124535	broad.mit.edu	37	17	56565201	56565201	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IFIT1	3434	broad.mit.edu	37	10	91162071	91162071	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18736130	18736130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
JAKMIP3	282973	broad.mit.edu	37	10	133961472	133961472	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154744736	154744736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52793886	52793886	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LELP1	149018	broad.mit.edu	37	1	153177408	153177408	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LGALS9B	284194	broad.mit.edu	37	17	20370782	20370783	+	Frame_Shift_Ins	INS	-	TC	TC	rs67161709	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151511932	151511932	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRDD	55367	broad.mit.edu	37	11	803579	803579	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC61	65999	broad.mit.edu	37	7	150034457	150034457	+	Silent	SNP	T	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85546098	85546098	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MITF	4286	broad.mit.edu	37	3	69928509	69928509	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29608253	29608253	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8997497	8997497	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1087470	1087470	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57437906	57437906	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR2J3	442186	broad.mit.edu	37	6	29079901	29079901	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDC	5132	broad.mit.edu	37	1	186415580	186415580	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDCD6IP	10015	broad.mit.edu	37	3	33887039	33887039	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33332255	33332255	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PI4K2B	55300	broad.mit.edu	37	4	25258214	25258214	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51524031	51524031	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161152232	161152232	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7417116	7417116	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPWD1	23398	broad.mit.edu	37	5	64867889	64867889	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1677555	1677555	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RHCG	51458	broad.mit.edu	37	15	90039695	90039695	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200213434	200213434	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SENP1	29843	broad.mit.edu	37	12	48442848	48442848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57373959	57373959	+	Missense_Mutation	SNP	C	G	G	rs61761890	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC20A2	6575	broad.mit.edu	37	8	42317465	42317465	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYDE2	84144	broad.mit.edu	37	1	85648743	85648743	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57077445	57077445	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55622657	55622657	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58282987	58282987	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZBTB1	22890	broad.mit.edu	37	14	64988623	64988623	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZDHHC18	84243	broad.mit.edu	37	1	27176851	27176851	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF107	51427	broad.mit.edu	37	7	64166913	64166913	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF182	7569	broad.mit.edu	37	X	47836772	47836772	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44488853	44488853	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF543	125919	broad.mit.edu	37	19	57839655	57839655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3378-01	TCGA-A3-3378-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
