Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ASH1L	55870	broad.mit.edu	37	1	155308160	155308160	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72892732	72892732	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BEND6	221336	broad.mit.edu	37	6	56883335	56883335	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C15orf52	388115	broad.mit.edu	37	15	40628801	40628801	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C5orf44	80006	broad.mit.edu	37	5	64933559	64933559	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74073548	74073548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAPN7	23473	broad.mit.edu	37	3	15292631	15292631	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CWC22	57703	broad.mit.edu	37	2	180851432	180851432	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX59	83479	broad.mit.edu	37	1	200617572	200617572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100660755	100660755	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116485484	116485485	+	Missense_Mutation	DNP	TA	AC	AC	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	TA	TA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131190764	131190764	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37876087	37876087	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM40A	85369	broad.mit.edu	37	1	110589317	110589317	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38314935	38314935	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GLT8D1	55830	broad.mit.edu	37	3	52729309	52729309	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR174	84636	broad.mit.edu	37	X	78427224	78427224	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR4	2828	broad.mit.edu	37	19	46094848	46094848	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GTF2A1	2957	broad.mit.edu	37	14	81659180	81659180	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HACE1	57531	broad.mit.edu	37	6	105192486	105192486	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HERPUD2	64224	broad.mit.edu	37	7	35678058	35678058	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HMGXB4	10042	broad.mit.edu	37	22	35659854	35659854	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	29018370	29018370	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129663519	129663519	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LCA5	167691	broad.mit.edu	37	6	80203392	80203392	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LDOC1L	84247	broad.mit.edu	37	22	44893405	44893405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LMBRD2	92255	broad.mit.edu	37	5	36117868	36117868	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAFA	389692	broad.mit.edu	37	8	144511954	144511956	+	In_Frame_Del	DEL	TGG	-	-	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	TGG	TGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20081684	20081684	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MIDN	90007	broad.mit.edu	37	19	1257108	1257108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47703619	47703619	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	-	-	rs60484572;rs1047489	by1000genomes	TCGA-A3-3385-01	TCGA-A3-3385-01	CCCCCAGCT	CCCCCAGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10447217	10447217	+	Splice_Site	SNP	A	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10535182	10535182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124858994	124858994	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDRG2	57447	broad.mit.edu	37	14	21486946	21486946	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37006527	37006527	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7981799	7981799	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139396756	139396756	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15298087	15298087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHGB4	8641	broad.mit.edu	37	5	140768184	140768184	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PENK	5179	broad.mit.edu	37	8	57353861	57353861	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRRG3	79057	broad.mit.edu	37	X	150868604	150868604	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40900148	40900148	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38955727	38955727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCARB1	949	broad.mit.edu	37	12	125267275	125267275	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIRT1	23411	broad.mit.edu	37	10	69676090	69676091	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110709707	110709708	+	Frame_Shift_Del	DEL	GG	-	-	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228881372	228881372	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29769552	29769552	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168269666	168269666	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115624462	115624462	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105914998	105914998	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TIMM17A	10440	broad.mit.edu	37	1	201926640	201926640	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNK1	8711	broad.mit.edu	37	17	7291994	7291994	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPPP	11076	broad.mit.edu	37	5	678108	678108	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TUBB1	81027	broad.mit.edu	37	20	57598805	57598805	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183829	10183830	+	Frame_Shift_Del	DEL	AC	-	-	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS54	51542	broad.mit.edu	37	2	64196097	64196097	+	Silent	SNP	T	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZCCHC12	170261	broad.mit.edu	37	X	117960298	117960298	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZDHHC8	29801	broad.mit.edu	37	22	20127299	20127299	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157350	145157350	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFAND1	79752	broad.mit.edu	37	8	82626242	82626242	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFP82	284406	broad.mit.edu	37	19	36884269	36884269	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF260	339324	broad.mit.edu	37	19	37005751	37005751	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3385-01	TCGA-A3-3385-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
