Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NOL9	79707	genome.wustl.edu	37	1	6610651	6610651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024654.4	-1	validated	p.R141C	0.016	69	0%	95	30.5%	2	50%	benign(0.007)	tolerated(0.06)	neutral(0.323)	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7798304	7798304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015215.1	+1	validated	p.S1315Y	0.051	61	0%	79	34.2%	0	-	possibly_damaging(0.455)	deleterious(0)	deleterious(0.594)	NULL
PTCHD2	57540	genome.wustl.edu	37	1	11579454	11579454	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020780.1	+1	validated	p.P644	0.023	23	0%	48	33.3%	0	-	-	-	-	HMMPfam_Patched
PRAMEF10	343071	genome.wustl.edu	37	1	12953077	12953077	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039361.3	-1	validated	p.Q365	0.004	153	0%	193	23.8%	0	-	-	-	-	superfamily_SSF52047
PRAMEF4	400735	genome.wustl.edu	37	1	13052804	13052804	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414205	-1	known	p.I453	0.000	112	0%	159	57.2%	0	-	-	-	-	NULL
CELA2B	51032	genome.wustl.edu	37	1	15808871	15808871	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015849.2	+1	reviewed	p.S113	0.025	58	0%	84	36.9%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
DDI2	84301	genome.wustl.edu	37	1	15956903	15956903	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032341.3	+1	provisional	p.S118A	0.612	133	0%	167	33.5%	1	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
SPEN	23013	genome.wustl.edu	37	1	16260589	16260589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.I2618M	1.000	212	0%	411	32.1%	1	0%	possibly_damaging(0.578)	tolerated(0.09)	deleterious(0.495)	NULL
PADI3	51702	genome.wustl.edu	37	1	17592195	17592195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016233.2	+1	reviewed	p.D130N	0.043	38	0%	72	31.9%	0	-	benign(0.07)	tolerated(0.07)	neutral(0.324)	HMMPfam_PAD_M,superfamily_PAD_central
PADI4	23569	genome.wustl.edu	37	1	17690064	17690064	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012387.2	+1	reviewed	p.F602	0.982	9	0.000	20	0.400	0	-	-	-	-	HMMPfam_PAD,superfamily_Pentein
UBR4	23352	genome.wustl.edu	37	1	19449454	19449454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.L3230S	1.000	58	0%	66	24.2%	0	-	benign(0.08)	deleterious(0.02)	neutral(0.389)	superfamily_ARM repeat
EIF4G3	8672	genome.wustl.edu	37	1	21226374	21226374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.S549R	1.000	251	0%	275	33.5%	5	20%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
TCEB3	6924	genome.wustl.edu	37	1	24077385	24077385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003198.2	+1	reviewed	p.R123H	1.000	42	0%	57	35.1%	6	83.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
IL22RA1	58985	genome.wustl.edu	37	1	24447553	24447553	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021258.2	-1	reviewed	p.P489	0.000	50	0%	76	32.9%	0	-	-	-	-	NULL
SYF2	25949	genome.wustl.edu	37	1	25549839	25549839	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015484.4	-1	reviewed	p.K217T	1.000	146	0%	223	33.2%	171	49.1%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_SYF2
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.R1989*	1.000	152	0%	283	33.2%	20	50%	-	-	-	NULL
SMPDL3B	27293	genome.wustl.edu	37	1	28282236	28282236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014474.2	+1	validated	p.K244N	1.000	23	0%	34	41.2%	24	54.1%	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
MECR	51102	genome.wustl.edu	37	1	29542570	29542570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016011.2	-1	validated	p.N118S	0.001	64	0%	77	20.8%	57	31.5%	benign(0)	tolerated(0.72)	neutral(0.002)	superfamily_GroES-like,HMMPfam_ADH_N
PTP4A2	8073	genome.wustl.edu	37	1	32381554	32381554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080391.2	-1	reviewed	p.R44Q	1.000	46	0%	38	23.7%	188	21.2%	possibly_damaging(0.751)	deleterious(0.01)	deleterious(0.681)	HMMPfam_Y_phosphatase,superfamily_(Phosphotyrosine protein) phosphatases II
RNF19B	127544	genome.wustl.edu	37	1	33407869	33407869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153341.2	-1	validated	p.K533E	0.999	59	0%	86	33.7%	18	33.3%	benign(0.273)	tolerated(0.26)	neutral(0.063)	NULL
AK2	204	genome.wustl.edu	37	1	33478683	33478683	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398192	-1	known	p.S192*	0.000	121	0%	170	30%	32	40.6%	-	-	-	NULL
ZSCAN20	7579	genome.wustl.edu	37	1	33960712	33960712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145238.3	+1	validated	p.R923H	0.999	153	1.3%	205	36.6%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
THRAP3	9967	genome.wustl.edu	37	1	36752334	36752334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.R168Q	1.000	422	0%	525	10.5%	20	5%	unknown(0)	tolerated(0.32)	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39776606	39776606	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372925	+1	known	p.S207A	0.031	169	0%	164	37.8%	0	-	-	-	-	superfamily_Spectrin repeat
PABPC4	8761	genome.wustl.edu	37	1	40033458	40033458	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135653.1	-1	reviewed	p.E313*	1.000	36	0%	51	19.6%	113	0.8%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RLF	6018	genome.wustl.edu	37	1	40702949	40702949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012421.3	+1	validated	p.N859D	1.000	158	0%	153	30.7%	1	100%	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
RLF	6018	genome.wustl.edu	37	1	40703170	40703170	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012421.3	+1	validated	p.V932	1.000	182	0%	180	12.2%	1	0%	-	-	-	NULL
ZNF643	65243	genome.wustl.edu	37	1	40922962	40922962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431552	+1	known	p.F27L	0.349	106	0%	164	32.3%	1	0%	benign(0.003)	tolerated(0.65)	neutral(0.003)	NULL
ERI3	79033	genome.wustl.edu	37	1	44687243	44687243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024066.1	-1	validated	p.S334L	0.998	27	0%	72	30.6%	227	44.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAF1	11124	genome.wustl.edu	37	1	50917800	50917800	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371778	-1	known	p.F451	0.000	150	0%	202	26.2%	0	-	-	-	-	NULL
OSBPL9	114883	genome.wustl.edu	37	1	52212425	52212425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148909.1	+1	reviewed	p.R176K	1.000	245	0%	264	31.4%	2	0%	possibly_damaging(0.925)	tolerated(1)	neutral(0.373)	NULL
ECHDC2	55268	genome.wustl.edu	37	1	53377404	53377404	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018281.2	-1	validated	p.F60	0.023	67	0%	121	33.9%	4	0%	-	-	-	HMMPfam_ECH,superfamily_SSF52096
TTC4	7268	genome.wustl.edu	37	1	55182302	55182302	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004623.3	+1	validated	p.S47	0.999	70	0%	139	26.6%	7	28.5%	-	-	-	NULL
PPAP2B	8613	genome.wustl.edu	37	1	56962285	56962285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003713.3	-1	reviewed	p.R292W	1.000	65	0%	95	24.2%	22	45.4%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
DOCK7	85440	genome.wustl.edu	37	1	62923270	62923270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033407.2	-1	validated	p.P2076T	1.000	211	0%	233	32.2%	52	51.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ded_cyto
PGM1	5236	genome.wustl.edu	37	1	64097420	64097420	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002633.2	+1	reviewed	p.R217*	0.986	191	0%	200	34%	21	0%	-	-	-	HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase first 3 domains
CACHD1	57685	genome.wustl.edu	37	1	65143958	65143958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020925.2	+1	validated	p.A1019V	1.000	92	0%	107	29%	6	50%	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
C1orf141	400757	genome.wustl.edu	37	1	67558815	67558815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013674.1	-1	predicted	p.I359T	0.000	242	0%	196	33.2%	0	-	benign(0.001)	tolerated(1)	-	NULL
IL12RB2	3595	genome.wustl.edu	37	1	67786113	67786113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001559.2	+1	reviewed	p.I21T	0.001	170	0%	234	35.5%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
IL12RB2	3595	genome.wustl.edu	37	1	67787359	67787359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001559.2	+1	reviewed	p.C51R	0.965	307	0%	387	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lep_receptor_Ig
LRRC7	57554	genome.wustl.edu	37	1	70504471	70504471	+	Silent	SNP	C	C	T	rs149666972	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.I950	0.123	142	0%	106	25.5%	0	-	-	-	-	NULL
SLC44A5	204962	genome.wustl.edu	37	1	75862295	75862295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152697.4	-1	validated	p.D9Y	0.019	251	0%	225	33.8%	0	-	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
MSH4	4438	genome.wustl.edu	37	1	76378490	76378490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.R910Q	0.930	40	0%	33	30.3%	0	-	benign(0.091)	tolerated(0.27)	neutral(0.040)	NULL
GIPC2	54810	genome.wustl.edu	37	1	78601371	78601371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017655.4	+1	validated	p.E298K	1.000	69	0%	68	27.9%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
ELTD1	64123	genome.wustl.edu	37	1	79403522	79403522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022159.3	-1	validated	p.T244P	0.976	377	0%	332	31.3%	2	0%	possibly_damaging(0.804)	deleterious(0.03)	deleterious(0.667)	NULL
LPHN2	23266	genome.wustl.edu	37	1	82450946	82450946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012302.2	+1	reviewed	p.R1122C	1.000	109	0%	65	41.5%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Latrophilin
MCOLN3	55283	genome.wustl.edu	37	1	85499896	85499896	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018298.9	-1	validated	p.A145	0.626	202	0%	291	30.6%	0	-	-	-	-	NULL
WDR63	126820	genome.wustl.edu	37	1	85546930	85546930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145172.3	+1	validated	p.I39M	0.998	220	0%	238	34%	0	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
CCBL2	56267	genome.wustl.edu	37	1	89434395	89434395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000260508	-1	known	p.K87N	0.994	206	0%	192	41.1%	6	33.3%	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
LRRC8C	84230	genome.wustl.edu	37	1	90179768	90179768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032270.4	+1	validated	p.L547I	1.000	172	0%	180	28.3%	5	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	superfamily_L domain-like
ZNF644	84146	genome.wustl.edu	37	1	91404171	91404171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.D914N	0.996	152	0%	155	34.2%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPAP2	79871	genome.wustl.edu	37	1	92846403	92846403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370343	+1	known	p.I604T	0.983	259	0%	317	30.3%	12	66.6%	benign(0.273)	deleterious(0.01)	neutral(0.435)	NULL
MTF2	22823	genome.wustl.edu	37	1	93594890	93594890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007358.3	+1	validated	p.R349C	1.000	230	0%	165	35.8%	5	40%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
VAV3	10451	genome.wustl.edu	37	1	108247212	108247212	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006113.4	-1	reviewed	p.C555	1.000	102	0%	99	37.4%	1	100%	-	-	-	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
VAV3	10451	genome.wustl.edu	37	1	108292213	108292213	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006113.4	-1	reviewed	p.H421	1.000	108	0%	105	28.6%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
HENMT1	113802	genome.wustl.edu	37	1	109191496	109191496	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102592.1	-1	validated	p.E292*	0.000	122	0%	124	29.8%	1	0%	-	-	-	NULL
KCNA10	3744	genome.wustl.edu	37	1	111060956	111060956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005549.2	-1	reviewed	p.R152W	1.000	97	0%	146	25.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
CHI3L2	1117	genome.wustl.edu	37	1	111773412	111773412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004000.2	+1	validated	p.R40Q	0.008	72	0%	104	36.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
ADORA3	140	genome.wustl.edu	37	1	112045905	112045905	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020683.6	-1	reviewed	p.L24	0.180	44	0%	68	35.3%	0	-	-	-	-	superfamily_SSF81321
WNT2B	7482	genome.wustl.edu	37	1	113059774	113059774	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024494.2	+1	reviewed	p.K238T	1.000	81	0%	117	25.6%	0	-	possibly_damaging(0.523)	deleterious(0)	deleterious(0.621)	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1
LOC128322	128322	genome.wustl.edu	37	1	113291091	113291091	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_060943.1	+1	model	p.F125	1.000	24	0%	58	29.3%	0	-	-	-	-	superfamily_NTF2-like
PHTF1	10745	genome.wustl.edu	37	1	114246723	114246723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006608.2	-1	validated	p.A624T	1.000	113	0%	109	26.6%	15	26.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
HIPK1	204851	genome.wustl.edu	37	1	114511225	114511225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198268.1	+1	reviewed	p.R909Q	1.000	134	0%	158	27.2%	1	0%	probably_damaging(0.965)	tolerated(0.07)	deleterious(0.726)	NULL
ATP1A1	476	genome.wustl.edu	37	1	116944182	116944182	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000701.7	+1	reviewed	p.K952	1.000	388	0%	579	31.1%	1161	46.9%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
LOC100287935	100287935	genome.wustl.edu	37	1	117150721	117150721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342105.1	+1	model	p.A69T	0.543	245	0%	357	22.4%	3	0%	-	-	-	NULL
HAO2	51179	genome.wustl.edu	37	1	119936434	119936434	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005783.1	+1	reviewed	p.R343*	0.007	202	0%	201	14.9%	0	-	-	-	-	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
PHGDH	26227	genome.wustl.edu	37	1	120286511	120286511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006623.3	+1	reviewed	p.L484F	1.000	82	0%	202	31.2%	328	48.1%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144874014	144874014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.S1648L	0.901	314	0%	504	15.5%	1	0%	unknown(0)	tolerated(0.35)	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144946740	144946740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.R174I	0.917	114	0%	128	14.1%	0	-	unknown(0)	tolerated(0.12)	-	NULL
HFE2	148738	genome.wustl.edu	37	1	145415319	145415319	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213653.3	+1	reviewed	p.Y46	0.556	45	0%	76	18.4%	0	-	-	-	-	HMMPfam_RGM_N
RBM8A	9939	genome.wustl.edu	37	1	145509027	145509027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005105.2	+1	reviewed	p.R152W	1.000	134	0.7%	207	14.5%	584	15.7%	unknown(0)	deleterious(0)	-	superfamily_RNA-binding domain RBD
PIAS3	10401	genome.wustl.edu	37	1	145581189	145581189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006099.3	+1	reviewed	p.E306D	1.000	49	0%	86	36%	27	48.1%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_SSF57850
SV2A	9900	genome.wustl.edu	37	1	149885062	149885062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014849.3	-1	validated	p.E111K	1.000	97	0%	205	38%	2	50%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
SEMA6C	10500	genome.wustl.edu	37	1	151111186	151111186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030913.4	-1	reviewed	p.R126C	1.000	20	0%	38	34.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
CGN	57530	genome.wustl.edu	37	1	151495983	151495983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020770.2	+1	validated	p.R405Q	0.191	40	0%	74	44.6%	6	50%	benign(0.006)	tolerated(0.49)	neutral(0.011)	NULL
CGN	57530	genome.wustl.edu	37	1	151509750	151509750	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020770.2	+1	validated	p.F1180	0.922	50	0%	81	27.2%	25	56%	-	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152079924	152079924	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007113.2	-1	provisional	p.V1923	0.000	394	0%	454	34.6%	0	-	-	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152193610	152193610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.F165L	0.000	51	0%	92	17.4%	0	-	benign(0.07)	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152281985	152281985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.R1793C	0.000	108	0%	256	34.4%	0	-	unknown(0)	tolerated(0.07)	-	NULL
KPRP	448834	genome.wustl.edu	37	1	152732864	152732864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025231.1	+1	provisional	p.R267H	0.997	90	0%	106	41.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CREB3L4	148327	genome.wustl.edu	37	1	153946099	153946099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130898.2	+1	provisional	p.L301I	1.000	22	0%	42	28.6%	54	42.5%	possibly_damaging(0.535)	tolerated(0.13)	neutral(0.433)	NULL
ATP8B2	57198	genome.wustl.edu	37	1	154303314	154303314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020452.3	+1	reviewed	p.K71N	1.000	29	0%	70	38.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81665
ATP8B2	57198	genome.wustl.edu	37	1	154306691	154306691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020452.3	+1	reviewed	p.G266D	1.000	107	0%	224	13.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
SHC1	6464	genome.wustl.edu	37	1	154936832	154936832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368441	-1	known	p.A218T	0.005	5	0.000	7	0.571	0	-	unknown(0)	tolerated(0.16)	-	HMMPfam_SH2,HMMSmart_SM00252
SCAMP3	10067	genome.wustl.edu	37	1	155230379	155230379	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005698.2	-1	reviewed	p.S72	0.169	59	0%	124	35.5%	63	38%	-	-	-	NULL
NES	10763	genome.wustl.edu	37	1	156641579	156641579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006617.1	-1	reviewed	p.N801D	0.003	21	0%	71	29.6%	8	12.5%	benign(0.073)	tolerated(0.25)	neutral(0.042)	NULL
CD1C	911	genome.wustl.edu	37	1	158261923	158261923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443761	+1	known	p.E61*	0.000	659	0.2%	620	34.7%	2	0%	benign(0.002)	tolerated(0.73)	neutral(0.002)	superfamily_MHC antigen-recognition domain
ATP1A2	477	genome.wustl.edu	37	1	160104995	160104995	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447527	+1	known	p.S386L	0.998	63	0%	109	33%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP1A4	480	genome.wustl.edu	37	1	160147351	160147351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.I878T	1.000	134	0%	224	27.2%	0	-	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
COPA	1314	genome.wustl.edu	37	1	160275367	160275367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098398.1	-1	reviewed	p.L517R	1.000	174	0%	230	28.3%	4	75%	benign(0.009)	tolerated(0.31)	neutral(0.028)	HMMPfam_Coatomer_WDAD
USF1	7391	genome.wustl.edu	37	1	161012670	161012670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007122.3	-1	reviewed	p.Q4P	1.000	59	0%	133	34.6%	20	25%	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
USP21	27005	genome.wustl.edu	37	1	161134637	161134637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014443.2	+1	reviewed	p.F466C	1.000	83	0%	184	31%	50	38%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_Cysteine proteinases
FCGR2A	2212	genome.wustl.edu	37	1	161487879	161487879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136219.1	+1	reviewed	p.D299N	0.003	141	0%	187	26.2%	8	0%	possibly_damaging(0.85)	tolerated(0.2)	neutral(0.376)	NULL
ATF6	22926	genome.wustl.edu	37	1	161771928	161771928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.A259S	0.000	200	0%	161	33.5%	9	44.4%	benign(0.005)	tolerated(0.69)	neutral(0.002)	NULL
SH2D1B	117157	genome.wustl.edu	37	1	162381718	162381718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053282.4	-1	validated	p.L30S	0.798	76	0%	103	29.1%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
MAEL	84944	genome.wustl.edu	37	1	166991077	166991077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032858.1	+1	validated	p.F430L	1.000	137	0%	141	39%	0	-	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
SFT2D2	375035	genome.wustl.edu	37	1	168201117	168201117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199344.2	+1	validated	p.A66T	0.732	50	0%	71	15.5%	9	22.2%	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_SFT2
BLZF1	8548	genome.wustl.edu	37	1	169346190	169346190	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003666.2	+1	validated	p.L147	0.998	283	0%	226	34.5%	9	33.3%	-	-	-	NULL
SLC19A2	10560	genome.wustl.edu	37	1	169446619	169446619	+	Missense_Mutation	SNP	G	G	A	rs141677505	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006996.2	-1	reviewed	p.S194F	1.000	163	0%	162	29%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
FMO1	2326	genome.wustl.edu	37	1	171236829	171236829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002021.1	+1	reviewed	p.Y94H	1.000	176	0%	215	38.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
DNM3	26052	genome.wustl.edu	37	1	172062854	172062854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359070	+1	known	p.S522A	1.000	114	0%	107	28%	2	0%	unknown(0)	tolerated(0.9)	-	NULL
C1orf105	92346	genome.wustl.edu	37	1	172425603	172425603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139240.3	+1	validated	p.C83R	0.305	144	0%	200	29.5%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
LOC646870	646870	genome.wustl.edu	37	1	173331937	173331937	+	RNA	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040282.2	-1	model	NULL	1.000	62	0%	109	26.6%	0	-	-	-	-	-
RC3H1	149041	genome.wustl.edu	37	1	173934254	173934254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172071.2	-1	validated	p.R447C	1.000	117	0%	100	19%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_CCCH zinc finger
GPR52	9293	genome.wustl.edu	37	1	174417376	174417376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005684.4	+1	validated	p.E43K	1.000	186	0.5%	186	32.3%	0	-	probably_damaging(0.999)	tolerated(0.26)	deleterious(0.524)	superfamily_SSF81321
TNR	7143	genome.wustl.edu	37	1	175348869	175348869	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003285.2	-1	validated	p.I594	0.989	55	0%	71	25.4%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TNR	7143	genome.wustl.edu	37	1	175355408	175355408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003285.2	-1	validated	p.R513C	1.000	55	0%	66	31.8%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ASTN1	460	genome.wustl.edu	37	1	176903425	176903425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004319.1	-1	validated	p.F845S	1.000	193	0%	204	11.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_MACPF
RASAL2	9462	genome.wustl.edu	37	1	178412233	178412233	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170692.2	+1	reviewed	p.E433*	1.000	269	0%	221	34.4%	0	-	-	-	-	HMMSmart_RasGAP,superfamily_Rho_GAP
RALGPS2	55103	genome.wustl.edu	37	1	178846735	178846735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152663.3	+1	validated	p.R237Q	1.000	156	0.6%	106	39.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00147,superfamily_Ras GEF
SOAT1	6646	genome.wustl.edu	37	1	179304680	179304680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003101.4	+1	provisional	p.F73V	1.000	120	0%	182	31.9%	5	60%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
GLUL	2752	genome.wustl.edu	37	1	182353708	182353708	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033044.2	-1	reviewed	p.N318	1.000	103	0%	145	38.6%	307	51.1%	-	-	-	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase
RGS8	85397	genome.wustl.edu	37	1	182640797	182640797	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033345.2	-1	reviewed	p.Q25	1.000	69	0%	103	34%	0	-	-	-	-	NULL
NPL	80896	genome.wustl.edu	37	1	182797955	182797955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030769.1	+1	provisional	p.F292C	0.992	112	0%	125	32%	1	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_DHDPS,superfamily_Aldolase
DHX9	1660	genome.wustl.edu	37	1	182852658	182852658	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.R1050*	1.000	196	0%	186	31.7%	116	2.5%	-	-	-	HMMPfam_DUF1605
FAM129A	116496	genome.wustl.edu	37	1	184801012	184801012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052966.2	-1	validated	p.S229Y	0.815	108	0%	105	19%	1	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
HMCN1	83872	genome.wustl.edu	37	1	186113786	186113786	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.C4739	1.000	169	0%	169	32%	1	100%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PRG4	10216	genome.wustl.edu	37	1	186277958	186277958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005807.3	+1	reviewed	p.K1036T	0.137	152	0%	163	30.1%	1	0%	unknown(0)	-	-	NULL
TPR	7175	genome.wustl.edu	37	1	186330017	186330017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.H327N	1.000	100	0%	96	28.1%	2	50%	possibly_damaging(0.647)	tolerated(0.09)	deleterious(0.523)	NULL
CFHR5	81494	genome.wustl.edu	37	1	196965163	196965163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030787.3	+1	reviewed	p.T268A	0.082	209	0%	175	29.7%	0	-	benign(0.001)	tolerated(0.67)	neutral(0.003)	superfamily_Complement_control_module
CFHR5	81494	genome.wustl.edu	37	1	196977685	196977685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030787.3	+1	reviewed	p.K528Q	0.065	87	0%	118	28%	0	-	probably_damaging(0.978)	deleterious(0.05)	deleterious(0.766)	HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197009749	197009749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001994.2	-1	reviewed	p.D619Y	0.000	129	0%	109	27.5%	0	-	benign(0.313)	tolerated(0.09)	neutral(0.394)	superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197030122	197030122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001994.2	-1	reviewed	p.E179K	0.000	178	0%	145	40.7%	0	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197030980	197030980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001994.2	-1	reviewed	p.D129Y	0.036	110	0%	71	29.6%	0	-	possibly_damaging(0.906)	tolerated(0.07)	deleterious(0.678)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197065198	197065198	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.E2973*	0.237	449	0%	331	26.6%	3	33.3%	-	-	-	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197113113	197113113	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.N139H	1.000	67	0%	91	23.1%	0	-	possibly_damaging(0.791)	deleterious(0.01)	deleterious(0.702)	NULL
ZBTB41	360023	genome.wustl.edu	37	1	197157560	197157560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.K470E	1.000	72	0%	77	16.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DENND1B	163486	genome.wustl.edu	37	1	197581104	197581104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142795.1	-1	validated	p.A239V	1.000	96	1%	63	28.6%	2	50%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_DENN,HMMSmart_SM00799
ZNF281	23528	genome.wustl.edu	37	1	200378492	200378492	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012482.3	-1	provisional	p.Q114	1.000	13	0%	10	40%	0	-	-	-	-	NULL
KIF14	9928	genome.wustl.edu	37	1	200587658	200587658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014875.2	-1	validated	p.R65I	0.998	82	0%	91	28.6%	1	100%	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
PRELP	5549	genome.wustl.edu	37	1	203455912	203455912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002725.3	+1	reviewed	p.H351R	1.000	28	0%	73	20.5%	9	0%	benign(0.005)	tolerated(1)	-	HMMPfam_LRR_1,superfamily_L domain-like
NFASC	23114	genome.wustl.edu	37	1	204978754	204978754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.L1049P	1.000	38	0%	148	12.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLHDC8A	55220	genome.wustl.edu	37	1	205307700	205307700	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018203.1	-1	provisional	p.S261*	0.880	43	0%	106	29.2%	1	0%	-	-	-	superfamily_Gal_oxid_central
CR2	1380	genome.wustl.edu	37	1	207643339	207643339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.D373N	0.997	117	0%	122	27.9%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
KCNH1	3756	genome.wustl.edu	37	1	211093408	211093408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172362.2	-1	reviewed	p.I346L	1.000	193	0%	175	10.3%	2	0%	benign(0.006)	tolerated(0.17)	neutral(0.059)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FAM71A	149647	genome.wustl.edu	37	1	212799099	212799099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153606.3	+1	validated	p.G294S	0.016	27	0%	52	44.2%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
PTPN14	5784	genome.wustl.edu	37	1	214568294	214568294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.S265L	0.996	184	0%	252	38.5%	0	-	benign(0.151)	tolerated(0.12)	neutral(0.274)	superfamily_SSF50729
CENPF	1063	genome.wustl.edu	37	1	214814828	214814828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.K1049N	0.995	128	0%	152	33.6%	3	0%	benign(0.003)	tolerated(0.34)	neutral(0.023)	NULL
MIA3	375056	genome.wustl.edu	37	1	222825626	222825626	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198551.2	+1	validated	p.C1346	0.997	216	0%	189	29.6%	19	42.1%	-	-	-	NULL
DNAH14	127602	genome.wustl.edu	37	1	225152189	225152189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.D126Y	0.114	223	0%	149	32.2%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
LIN9	286826	genome.wustl.edu	37	1	226474059	226474059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173083.2	-1	provisional	p.R183W	1.000	120	0%	117	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DIRP
ZNF678	339500	genome.wustl.edu	37	1	227842047	227842047	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178549.3	+1	validated	p.S32	0.000	251	0%	200	27.5%	1	100%	-	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228412333	228412333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.C943R	0.840	40	0%	50	42%	1	0%	possibly_damaging(0.736)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
AGT	183	genome.wustl.edu	37	1	230846371	230846371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000029.3	-1	reviewed	p.T76A	0.602	30	0%	50	24%	1	0%	benign(0.022)	tolerated(0.17)	neutral(0.060)	superfamily_Serpins
GNPAT	8443	genome.wustl.edu	37	1	231403517	231403517	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014236.3	+1	reviewed	p.L383	0.997	91	0%	81	29.6%	49	53%	-	-	-	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232940927	232940927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019090.2	+1	validated	p.L53R	0.000	165	0%	242	28.1%	0	-	unknown(0)	-	-	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233393958	233393958	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014801.3	-1	provisional	p.N550	0.000	82	0%	77	23.4%	1	100%	-	-	-	NULL
SLC35F3	148641	genome.wustl.edu	37	1	234367243	234367243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173508.2	+1	provisional	p.R122C	0.333	19	0%	22	31.8%	0	-	probably_damaging(0.98)	tolerated(0.15)	deleterious(0.665)	NULL
LYST	1130	genome.wustl.edu	37	1	235920694	235920694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.L2316I	1.000	104	0%	112	28.6%	0	-	probably_damaging(1)	-	-	NULL
C1orf101	257044	genome.wustl.edu	37	1	244724198	244724198	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130957.1	+1	validated	p.F420V	0.027	307	0%	336	32.4%	0	-	benign(0.032)	tolerated(0.39)	neutral(0.018)	NULL
OR2M2	391194	genome.wustl.edu	37	1	248343830	248343830	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004688.1	+1	provisional	p.F181	0.000	668	0%	655	10.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2M3	127062	genome.wustl.edu	37	1	248366601	248366601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004689.1	+1	provisional	p.V78I	0.010	877	0.1%	833	31.5%	0	-	possibly_damaging(0.526)	tolerated(0.15)	neutral(0.418)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T1	26696	genome.wustl.edu	37	1	248570155	248570155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030904.1	+1	provisional	p.A287V	1.000	81	0%	61	39.3%	0	-	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	HMMPfam_7tm_1,superfamily_SSF81321
PXDN	7837	genome.wustl.edu	37	2	1664781	1664781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.K570T	1.000	13	0%	38	28.9%	1	0%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KIDINS220	57498	genome.wustl.edu	37	2	8873637	8873637	+	Silent	SNP	G	G	A	rs193191007	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020738.2	-1	validated	p.F1330	0.984	72	0%	82	40.2%	13	38.4%	-	-	-	NULL
TRIB2	28951	genome.wustl.edu	37	2	12880833	12880833	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021643.3	+1	reviewed	p.S315	0.735	52	0%	89	36%	4	50%	-	-	-	superfamily_Protein kinase-like (PK-like)
RAD51AP2	729475	genome.wustl.edu	37	2	17697722	17697722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099218.2	-1	provisional	p.R654K	0.001	106	0%	86	34.9%	0	-	benign(0)	tolerated(1)	-	NULL
APOB	338	genome.wustl.edu	37	2	21228133	21228133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.F3869L	0.547	131	0%	136	34.6%	0	-	possibly_damaging(0.601)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21234018	21234018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.D1908N	0.951	349	0%	412	28.9%	0	-	probably_damaging(0.992)	-	-	NULL
ATAD2B	54454	genome.wustl.edu	37	2	24110849	24110849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017552.1	-1	validated	p.R142Q	1.000	134	0%	185	34.6%	1	100%	possibly_damaging(0.582)	tolerated(0.15)	neutral(0.441)	NULL
ZNF512	84450	genome.wustl.edu	37	2	27825385	27825385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032434.2	+1	validated	p.R242Q	1.000	85	0%	110	36.4%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NLRC4	58484	genome.wustl.edu	37	2	32475709	32475709	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360906	-1	known	p.F408	0.038	82	0%	100	32%	0	-	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32750029	32750029	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.E3900*	1.000	23	0%	21	23.8%	2	0%	-	-	-	NULL
CRIM1	51232	genome.wustl.edu	37	2	36623862	36623862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016441.1	+1	provisional	p.R146Q	1.000	161	0%	163	33.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CRIM1	51232	genome.wustl.edu	37	2	36704088	36704088	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016441.1	+1	provisional	p.R350*	1.000	212	0%	211	33.6%	4	0%	-	-	-	HMMPfam_VWC,HMMSmart_VWC
FAM82A1	151393	genome.wustl.edu	37	2	38202438	38202438	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431895	+1	known	p.E33*	1.000	70	0%	97	32%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DHX57	90957	genome.wustl.edu	37	2	39046215	39046215	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198963.1	-1	provisional	p.Y1121*	0.975	139	0%	153	30.1%	5	0%	-	-	-	HMMPfam_HA2
SOS1	6654	genome.wustl.edu	37	2	39224157	39224157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005633.3	-1	reviewed	p.P996L	1.000	88	0%	73	13.7%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00147,superfamily_Ras GEF
MSH2	4436	genome.wustl.edu	37	2	47693876	47693876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432737	+1	known	p.K530E	1.000	179	0%	251	23.1%	6	16.6%	benign(0)	tolerated(1)	-	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III
PPP1R21	129285	genome.wustl.edu	37	2	48681781	48681781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135629.1	+1	validated	p.E58D	1.000	73	0%	100	24%	3	66.6%	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	HMMPfam_KLRAQ
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48807793	48807793	+	Silent	SNP	C	C	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172311.1	+1	reviewed	p.G7	1.000	203	0%	224	25%	0	-	-	-	-	NULL
LHCGR	3973	genome.wustl.edu	37	2	48915030	48915030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000233.3	-1	reviewed	p.L636I	0.982	557	0%	470	31.7%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	superfamily_Family A G protein-coupled receptor-like
USP34	9736	genome.wustl.edu	37	2	61448675	61448675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.P2621S	1.000	115	0%	97	39.2%	6	33.3%	probably_damaging(1)	-	-	NULL
FAM161A	84140	genome.wustl.edu	37	2	62067453	62067453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032180.2	-1	validated	p.R229Q	0.004	254	0%	315	36.5%	0	-	benign(0.078)	tolerated(0.6)	neutral(0.010)	NULL
VPS54	51542	genome.wustl.edu	37	2	64174584	64174584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016516.2	-1	reviewed	p.R393I	1.000	84	0%	72	41.7%	0	-	possibly_damaging(0.568)	deleterious(0.01)	deleterious(0.600)	NULL
AFTPH	54812	genome.wustl.edu	37	2	64794728	64794728	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203437.2	+1	validated	p.F656	1.000	375	0%	330	32.4%	13	46.1%	-	-	-	NULL
PLEK	5341	genome.wustl.edu	37	2	68622899	68622899	+	Missense_Mutation	SNP	G	G	A	rs185908473	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002664.2	+1	validated	p.R335H	1.000	149	0%	215	30.7%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ANKRD53	79998	genome.wustl.edu	37	2	71206811	71206811	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115116.1	+1	validated	p.F146	0.708	6	0.000	25	0.400	2	0%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ZNF638	27332	genome.wustl.edu	37	2	71615836	71615836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000410075	+1	known	p.E821K	0.269	56	0%	75	28%	2	50%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
EXOC6B	23233	genome.wustl.edu	37	2	72802736	72802736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015189.1	-1	validated	p.R244M	1.000	250	0.4%	179	13.4%	0	-	benign(0.242)	tolerated(0.42)	neutral(0.038)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73717018	73717018	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.N2643K	1.000	381	0%	426	32.2%	0	-	possibly_damaging(0.942)	deleterious(0.05)	deleterious(0.732)	NULL
SLC4A5	57835	genome.wustl.edu	37	2	74483027	74483027	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021196.3	-1	reviewed	p.K300	1.000	17	0%	38	31.6%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
HK2	3099	genome.wustl.edu	37	2	75094895	75094895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000189.4	+1	reviewed	p.R120Q	0.507	227	0%	349	37.2%	10	20%	benign(0.03)	tolerated(0.59)	neutral(0.006)	HMMPfam_Hexokinase_1,superfamily_SSF53067
CD8A	925	genome.wustl.edu	37	2	87016550	87016550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001768.6	-1	reviewed	p.T174M	0.000	27	0%	27	25.9%	0	-	probably_damaging(0.976)	tolerated(0.09)	deleterious(0.714)	NULL
SMYD1	150572	genome.wustl.edu	37	2	88367407	88367407	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198274.2	+1	provisional	p.N8	0.111	84	0%	95	33.7%	0	-	-	-	-	HMMSmart_SET,superfamily_SSF82199
ANKRD36BP2	645784	genome.wustl.edu	37	2	89100631	89100631	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_015424.1	+1	predicted	NULL	0.453	131	0%	108	20.4%	2	0%	-	-	-	-
IGKV2-28	28921	genome.wustl.edu	37	2	89521394	89521394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000482769	-1	known	p.L49F	0.000	117	0%	162	22.2%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV6D-41	28869	genome.wustl.edu	37	2	90109079	90109079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390271	+1	known	p.P115L	0.041	98	0%	133	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48726
TRIM43	129868	genome.wustl.edu	37	2	96259976	96259976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138800.1	+1	provisional	p.L69I	0.000	190	0%	175	25.7%	0	-	benign(0.233)	tolerated(0.41)	neutral(0.038)	superfamily_SSF57850
LOC400986	400986	genome.wustl.edu	37	2	96589410	96589410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717763.2	-1	model	p.K375T	0.049	69	0%	69	29%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
CIAO1	9391	genome.wustl.edu	37	2	96936923	96936923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004804.2	+1	validated	p.S285L	0.892	46	0%	65	23.1%	128	40.6%	possibly_damaging(0.948)	tolerated(0.18)	neutral(0.447)	superfamily_WD40_like
UBTFL6	643615	genome.wustl.edu	37	2	98253324	98253324	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001714896.2	-1	model	p.S309	0.984	69	0%	82	9.8%	0	-	-	-	-	superfamily_HMG-box
UNC50	25972	genome.wustl.edu	37	2	99232901	99232901	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014044.5	+1	validated	p.I183S	1.000	197	0%	257	33.1%	39	30.7%	possibly_damaging(0.736)	deleterious(0)	deleterious(0.714)	HMMPfam_UNC-50
TSGA10	80705	genome.wustl.edu	37	2	99634676	99634676	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025244.2	-1	validated	p.R687*	1.000	77	0%	105	32.4%	1	0%	-	-	-	NULL
EIF5B	9669	genome.wustl.edu	37	2	99954028	99954028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015904.3	+1	reviewed	p.K4T	1.000	4	0.000	9	0.444	29	41.3%	unknown(0)	deleterious(0)	-	NULL
MFSD9	84804	genome.wustl.edu	37	2	103334890	103334890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032718.3	-1	validated	p.K472E	0.763	92	0%	157	39.5%	11	9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107040008	107040008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.S1472Y	0.001	1156	0%	1068	16.2%	3	0%	benign(0.205)	deleterious(0.04)	neutral(0.369)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108488664	108488664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182588.2	+1	validated	p.V1402L	1.000	1048	0%	1002	29.3%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RANBP2	5903	genome.wustl.edu	37	2	109370341	109370341	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.E706*	1.000	417	0%	457	32.4%	2	0%	-	-	-	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112601008	112601008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022662.2	-1	validated	p.R674H	0.997	94	0%	150	20.7%	2	50%	possibly_damaging(0.87)	tolerated(0.08)	deleterious(0.638)	NULL
CHCHD5	84269	genome.wustl.edu	37	2	113343900	113343900	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032309.2	+1	provisional	p.C89	0.388	30	0%	62	21%	129	81.3%	-	-	-	HMMPfam_CHCH
IL36B	27177	genome.wustl.edu	37	2	113780347	113780347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014438.3	-1	reviewed	p.K133N	0.022	120	0%	137	31.4%	0	-	unknown(0)	-	-	superfamily_Cytokine
DDX18	8886	genome.wustl.edu	37	2	118583085	118583085	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006773.3	+1	reviewed	p.G477	0.980	213	0%	248	36.3%	29	44.8%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
CNTNAP5	129684	genome.wustl.edu	37	2	125627261	125627261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.Q1119K	0.166	70	0%	62	27.4%	0	-	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
MYO7B	4648	genome.wustl.edu	37	2	128331544	128331544	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.G214	0.998	37	0%	56	42.9%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
LIMS2	55679	genome.wustl.edu	37	2	128396984	128396984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017980.4	-1	validated	p.D324N	1.000	19	0%	86	29.1%	25	32%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LIM,HMMSmart_LIM
UGGT1	56886	genome.wustl.edu	37	2	128877943	128877943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020120.3	+1	validated	p.D296N	0.995	201	0%	308	35.1%	0	-	benign(0.029)	tolerated(0.12)	neutral(0.262)	NULL
ZNF806	646915	genome.wustl.edu	37	2	133070525	133070525	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001724242.2	+1	model	p.Y33*	0.133	267	0%	352	13.4%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF806	646915	genome.wustl.edu	37	2	133075879	133075879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001724242.2	+1	model	p.R447I	0.999	155	0%	190	12.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NCKAP5	344148	genome.wustl.edu	37	2	133542148	133542148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.D746Y	0.049	187	0%	239	32.2%	0	-	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	NULL
YSK4	80122	genome.wustl.edu	37	2	135741330	135741330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.K1046N	0.746	97	0%	109	37.6%	1	100%	possibly_damaging(0.84)	deleterious(0.04)	deleterious(0.670)	superfamily_Protein kinase-like (PK-like)
LCT	3938	genome.wustl.edu	37	2	136567390	136567390	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.E843*	1.000	85	0%	131	36.6%	0	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
SPOPL	339745	genome.wustl.edu	37	2	139310141	139310141	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001664.2	+1	validated	p.R124*	1.000	156	0%	112	33%	1	0%	-	-	-	HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like
NXPH2	11249	genome.wustl.edu	37	2	139428583	139428583	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007226.2	-1	validated	p.I235S	1.000	198	0%	145	31.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neurexophilin
LRP1B	53353	genome.wustl.edu	37	2	141473578	141473578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.D1996G	1.000	333	0%	197	32.5%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	142012122	142012122	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.F144	0.989	207	0%	198	33.8%	0	-	-	-	-	HMMSmart_EGF,PatternScan_EGF_2,superfamily_SSF57196
TNFAIP6	7130	genome.wustl.edu	37	2	152214217	152214217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007115.2	+1	reviewed	p.E13K	1.000	116	0%	110	23.6%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
RIF1	55183	genome.wustl.edu	37	2	152267838	152267838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.Y57H	0.002	104	0%	211	32.2%	1	0%	benign(0.296)	tolerated(0.44)	neutral(0.104)	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152476009	152476009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.N3367H	1.000	145	0%	173	30.6%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152581461	152581461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.M139I	1.000	33	0%	47	14.9%	0	-	benign(0.003)	tolerated(0.12)	neutral(0.261)	HMMPfam_Nebulin,HMMSmart_SM00227
KCNJ3	3760	genome.wustl.edu	37	2	155555728	155555728	+	Silent	SNP	C	C	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002239.2	+1	reviewed	p.G147	1.000	59	0%	81	33.3%	0	-	-	-	-	HMMPfam_IRK,superfamily_SSF81324
KCNJ3	3760	genome.wustl.edu	37	2	155711664	155711664	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002239.2	+1	reviewed	p.E449*	1.000	221	0%	167	31.1%	0	-	-	-	-	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160285729	160285729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013450.2	-1	validated	p.R746H	1.000	112	0%	81	29.6%	1	100%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
FIGN	55137	genome.wustl.edu	37	2	164467894	164467894	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018086.2	-1	validated	p.S150R	1.000	300	0%	238	16.8%	0	-	probably_damaging(0.989)	tolerated(0.13)	deleterious(0.692)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165947689	165947689	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.I1658	0.996	426	0%	387	31.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166210935	166210935	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.S1051	1.000	267	0%	226	28.3%	0	-	-	-	-	HMMPfam_Na_trans_assoc
SCN9A	6335	genome.wustl.edu	37	2	167055543	167055543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.S1858Y	1.000	293	0%	272	23.5%	0	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
SCN7A	6332	genome.wustl.edu	37	2	167262963	167262963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002976.2	-1	validated	p.F1392L	0.718	453	0.2%	366	31.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	168106318	168106318	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.E2806*	0.001	385	0.3%	376	17.6%	0	-	-	-	-	NULL
CERS6	253782	genome.wustl.edu	37	2	169571542	169571542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203463.1	+1	validated	p.V214A	0.764	198	0.5%	258	26%	0	-	benign(0)	tolerated(1)	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
LRP2	4036	genome.wustl.edu	37	2	170011078	170011078	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R4063*	0.999	168	0%	153	35.3%	0	-	-	-	-	superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170029623	170029623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.S3709N	1.000	65	0%	55	23.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
GPR155	151556	genome.wustl.edu	37	2	175326385	175326385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033045.2	-1	validated	p.S467Y	1.000	200	0%	272	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MIR10B	406903	genome.wustl.edu	37	2	177015070	177015070	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385011	+1	known	NULL	1.000	10	0%	22	40.9%	0	-	-	-	-	-
NFE2L2	4780	genome.wustl.edu	37	2	178098807	178098807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006164.3	-1	validated	p.T80P	1.000	113	0%	90	30%	39	41%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
AGPS	8540	genome.wustl.edu	37	2	178310273	178310273	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003659.3	+1	reviewed	e8-1	1.000	162	0%	141	33.3%	0	-	-	-	-	-
PDE11A	50940	genome.wustl.edu	37	2	178545555	178545555	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016953.3	-1	reviewed	p.R808*	1.000	113	0%	121	26.4%	0	-	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE11A	50940	genome.wustl.edu	37	2	178936394	178936394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016953.3	-1	reviewed	p.F257L	1.000	139	0%	136	33.8%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
OSBPL6	114880	genome.wustl.edu	37	2	179251821	179251821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145739.1	+1	reviewed	p.S708L	1.000	109	0%	122	30.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Oxysterol_BP
TTN	7273	genome.wustl.edu	37	2	179399240	179399240	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.S31466L	1.000	179	0%	163	34.4%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179403860	179403860	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.S30366L	0.980	90	0%	78	19.2%	1	100%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179417257	179417257	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E27554*	1.000	73	0%	73	38.4%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179418897	179418897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.K27077N	1.000	141	0%	155	27.7%	0	-	possibly_damaging(0.495)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179421849	179421849	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.S26776*	1.000	79	0%	91	30.8%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179453984	179453984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R18253H	0.695	155	0%	161	24.8%	0	-	possibly_damaging(0.737)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179534361	179534361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392423	-1	known	p.R112C	0.427	531	0%	417	31.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TTN	7273	genome.wustl.edu	37	2	179553441	179553441	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.F9476	0.001	121	0%	100	31%	1	0%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179580422	179580422	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.I7329	0.992	66	0%	60	38.3%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179588163	179588163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.T5978A	0.988	89	0%	75	26.7%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179592993	179592993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E5276K	1.000	121	0%	105	41%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
PDE1A	5136	genome.wustl.edu	37	2	183066436	183066436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005019.3	-1	validated	p.N344S	0.184	139	0%	115	32.2%	2	50%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
ZNF804A	91752	genome.wustl.edu	37	2	185801719	185801719	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194250.1	+1	provisional	p.L532	0.000	372	0%	266	34.2%	0	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186672106	186672106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.F6025V	0.998	336	0%	225	34.7%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
ZSWIM2	151112	genome.wustl.edu	37	2	187702137	187702137	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182521.2	-1	validated	p.N213	0.998	178	0%	150	30%	0	-	-	-	-	superfamily_SSF57850
TFPI	7035	genome.wustl.edu	37	2	188343499	188343499	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032281.2	-1	reviewed	p.K220	1.000	92	0%	69	15.9%	3	0%	-	-	-	NULL
GULP1	51454	genome.wustl.edu	37	2	189406036	189406036	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016315.2	+1	validated	p.S130	0.936	254	0%	183	21.9%	6	16.6%	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
COL5A2	1290	genome.wustl.edu	37	2	189975078	189975078	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	p.D65	1.000	131	0%	108	26.9%	2	0%	-	-	-	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1
MYO1B	4430	genome.wustl.edu	37	2	192246241	192246241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	p.Q413H	0.992	117	0%	95	22.1%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
OBFC2A	64859	genome.wustl.edu	37	2	192550670	192550670	+	RNA	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024415.1	+1	validated	NULL	0.009	23	0%	17	29.4%	9	55.5%	-	-	-	-
SLC39A10	57181	genome.wustl.edu	37	2	196544802	196544802	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.I12	0.994	152	0%	152	27.6%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1
HECW2	57520	genome.wustl.edu	37	2	197085627	197085627	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.I1395	1.000	238	0%	254	29.1%	0	-	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECW2	57520	genome.wustl.edu	37	2	197106879	197106879	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.F1193	1.000	167	0%	189	25.9%	0	-	-	-	-	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197629381	197629381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012086.2	-1	provisional	p.R856Q	1.000	195	0%	152	38.8%	57	43.8%	possibly_damaging(0.834)	deleterious(0.04)	deleterious(0.667)	NULL
PGAP1	80055	genome.wustl.edu	37	2	197784784	197784784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024989.3	-1	validated	p.I80L	0.928	237	0%	227	33.9%	0	-	benign(0.009)	tolerated(0.31)	neutral(0.028)	NULL
PLCL1	5334	genome.wustl.edu	37	2	198948840	198948840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.S102Y	1.000	227	0.4%	215	33.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ORC2	4999	genome.wustl.edu	37	2	201785859	201785859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006190.3	-1	reviewed	p.S384Y	1.000	38	0%	35	37.1%	11	45.4%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMPfam_ORC2
TRAK2	66008	genome.wustl.edu	37	2	202260102	202260102	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015049.2	-1	validated	p.R279*	1.000	249	0%	230	32.6%	2	0%	-	-	-	HMMPfam_HAP1_N
NOP58	51602	genome.wustl.edu	37	2	203167763	203167763	+	Missense_Mutation	SNP	A	A	G	rs34523815	byCluster;byFrequency	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015934.3	+1	provisional	p.T508A	0.995	180	0%	179	29.1%	303	50.8%	unknown(0)	tolerated(0.53)	-	NULL
PLEKHM3	389072	genome.wustl.edu	37	2	208866307	208866307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080475.2	-1	validated	p.F19L	1.000	312	0%	359	30.4%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CRYGA	1418	genome.wustl.edu	37	2	209028009	209028009	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014617.3	-1	validated	p.F57	0.999	83	0%	52	40.4%	0	-	-	-	-	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
CCDC108	255101	genome.wustl.edu	37	2	219871227	219871227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.R1560I	0.007	13	0%	40	35%	3	66.6%	benign(0.326)	tolerated(0.2)	neutral(0.151)	NULL
SPEG	10290	genome.wustl.edu	37	2	220344863	220344863	+	Splice_Site	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	e25+1	1.000	14	0%	46	39.1%	0	-	-	-	-	-
IRS1	3667	genome.wustl.edu	37	2	227662102	227662102	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005544.2	-1	reviewed	p.G451	1.000	24	0%	41	22%	4	0%	-	-	-	NULL
COL4A3	1285	genome.wustl.edu	37	2	228175660	228175660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.F1642L	1.000	60	0%	55	25.5%	0	-	unknown(0)	deleterious(0.03)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
MFF	56947	genome.wustl.edu	37	2	228205062	228205062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020194.4	+1	provisional	p.R162C	1.000	74	1.4%	79	36.7%	131	46.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF800
SPHKAP	80309	genome.wustl.edu	37	2	228881964	228881964	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142644.1	-1	validated	p.I1202	0.025	68	1.5%	68	35.3%	0	-	-	-	-	NULL
TRIP12	9320	genome.wustl.edu	37	2	230654350	230654350	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004238.1	-1	provisional	p.R1483*	1.000	159	0%	175	30.3%	12	8.3%	-	-	-	NULL
SP110	3431	genome.wustl.edu	37	2	231077552	231077552	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080424.2	-1	reviewed	p.I169	0.026	229	0%	294	33%	9	66.6%	-	-	-	NULL
SP140	11262	genome.wustl.edu	37	2	231176181	231176181	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007237.4	+1	validated	p.C792	0.002	136	0%	195	19%	1	0%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
DIS3L2	129563	genome.wustl.edu	37	2	233028296	233028296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152383.4	+1	validated	p.P360S	1.000	90	0%	96	36.5%	10	50%	possibly_damaging(0.452)	tolerated(0.08)	neutral(0.448)	NULL
UGT1A8	54576	genome.wustl.edu	37	2	234526397	234526397	+	Missense_Mutation	SNP	C	C	T	rs1126783	byCluster	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019076.4	+1	reviewed	p.S15F	0.696	255	0%	218	30.3%	0	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235951000	235951000	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014521.2	+1	reviewed	p.F529	0.370	34	0%	75	28%	10	50%	-	-	-	NULL
COL6A3	1293	genome.wustl.edu	37	2	238253710	238253710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.D2385Y	1.000	101	0%	153	32%	7	0%	probably_damaging(1)	-	-	NULL
RBM44	375316	genome.wustl.edu	37	2	238726726	238726726	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080504.2	+1	validated	p.S389	0.000	148	0%	127	29.1%	0	-	-	-	-	NULL
RBM44	375316	genome.wustl.edu	37	2	238738022	238738022	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080504.2	+1	validated	p.S922	0.000	330	0%	266	34.6%	0	-	-	-	-	NULL
CRBN	51185	genome.wustl.edu	37	3	3196451	3196451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016302.3	-1	reviewed	p.S272Y	1.000	102	0%	99	28.3%	13	61.5%	possibly_damaging(0.885)	tolerated(0.09)	deleterious(0.642)	HMMPfam_LON,HMMSmart_SM00464
ITPR1	3708	genome.wustl.edu	37	3	4699915	4699915	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.F368	1.000	112	0%	129	31.8%	2	100%	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
ITPR1	3708	genome.wustl.edu	37	3	4714883	4714883	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.I756	0.633	70	0%	78	11.5%	1	0%	-	-	-	NULL
ITPR1	3708	genome.wustl.edu	37	3	4741562	4741562	+	Silent	SNP	C	C	T	rs192863290	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.I1482	0.010	146	0%	181	28.7%	1	100%	-	-	-	NULL
RAD18	56852	genome.wustl.edu	37	3	8990234	8990234	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020165.3	-1	reviewed	p.K52Q	1.000	309	0%	356	33.4%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
ATP2B2	491	genome.wustl.edu	37	3	10401651	10401651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001331.2	-1	reviewed	p.R606C	1.000	71	0%	128	39.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
SLC6A1	6529	genome.wustl.edu	37	3	11061919	11061919	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003042.3	+1	validated	p.C164	1.000	19	0%	26	19.2%	0	-	-	-	-	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_2
TAMM41	132001	genome.wustl.edu	37	3	11885501	11885501	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138807.2	-1	provisional	e2+2	1.000	59	0%	78	25.6%	1	100%	-	-	-	-
METTL6	131965	genome.wustl.edu	37	3	15466516	15466516	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152396.2	-1	validated	p.P102	0.819	195	0%	281	31.7%	12	75%	-	-	-	HMMPfam_Methyltransf_12,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ANKRD28	23243	genome.wustl.edu	37	3	15726829	15726829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015199.2	-1	provisional	p.L735I	1.000	267	0%	225	37.3%	6	66.6%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
OXNAD1	92106	genome.wustl.edu	37	3	16336462	16336462	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138381.2	+1	validated	p.V130	1.000	243	0%	207	30.4%	15	33.3%	-	-	-	superfamily_Riboflavin_synthase_like_b-brl
EFHB	151651	genome.wustl.edu	37	3	19947191	19947191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144715.3	-1	validated	p.V447L	0.031	129	0%	146	30.1%	1	100%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
RARB	5915	genome.wustl.edu	37	3	25470331	25470331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000965.3	+1	reviewed	p.F37V	1.000	141	0%	161	31.7%	2	50%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
RARB	5915	genome.wustl.edu	37	3	25638038	25638038	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000965.3	+1	reviewed	p.E426	1.000	142	0%	178	27.5%	14	21.4%	-	-	-	NULL
EOMES	8320	genome.wustl.edu	37	3	27761750	27761750	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005442.2	-1	reviewed	p.F316	1.000	151	0%	226	20.4%	0	-	-	-	-	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
ZCWPW2	152098	genome.wustl.edu	37	3	28454759	28454759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040432.1	+1	provisional	p.R67I	0.530	414	0%	305	29.8%	0	-	possibly_damaging(0.462)	deleterious(0.05)	deleterious(0.497)	HMMPfam_zf-CW
ACVR2B	93	genome.wustl.edu	37	3	38518941	38518941	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001106.3	+1	reviewed	p.L72	0.955	29	0%	32	28.1%	0	-	-	-	-	HMMPfam_Activin_recp,superfamily_Snake toxin-like
SCN5A	6331	genome.wustl.edu	37	3	38671912	38671912	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.I94	1.000	17	0%	57	38.6%	0	-	-	-	-	NULL
SCN10A	6336	genome.wustl.edu	37	3	38739271	38739271	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006514.2	-1	validated	p.E1814*	1.000	223	0%	253	32.4%	0	-	-	-	-	NULL
SCN10A	6336	genome.wustl.edu	37	3	38753831	38753831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006514.2	-1	validated	p.A1304T	0.995	90	0%	113	31.9%	0	-	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38781128	38781128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006514.2	-1	validated	p.D720N	0.983	85	0%	108	32.4%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_Ion_trans,superfamily_SSF81324
ULK4	54986	genome.wustl.edu	37	3	41607546	41607546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017886.2	-1	validated	p.D1066Y	1.000	117	0%	156	32.7%	3	0%	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	superfamily_ARM-type_fold
SEC22C	9117	genome.wustl.edu	37	3	42610411	42610411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032970.2	-1	reviewed	p.R43Q	0.000	73	0%	79	30.4%	12	50%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_SNARE-like
ZNF167	55888	genome.wustl.edu	37	3	44612650	44612650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018651.2	+1	validated	p.R683K	1.000	204	0.5%	188	28.2%	4	75%	probably_damaging(0.983)	tolerated(0.14)	deleterious(0.678)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF197	10168	genome.wustl.edu	37	3	44684153	44684153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006991.3	+1	reviewed	p.K511E	0.998	204	0%	179	30.7%	0	-	probably_damaging(0.977)	tolerated(0.61)	neutral(0.423)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FYCO1	79443	genome.wustl.edu	37	3	46026399	46026399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024513.2	-1	validated	p.A2P	1.000	55	0%	81	11.1%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
KIF9	64147	genome.wustl.edu	37	3	47316956	47316956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134878.1	-1	validated	p.D40Y	0.980	77	0%	137	39.4%	116	49.1%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
BSN	8927	genome.wustl.edu	37	3	49662470	49662470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.P96L	0.267	37	0%	66	30.3%	0	-	possibly_damaging(0.794)	-	-	NULL
CACNA2D2	9254	genome.wustl.edu	37	3	50471834	50471834	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005505.1	-1	reviewed	p.F105	1.000	16	0%	37	32.4%	0	-	-	-	-	NULL
DOCK3	1795	genome.wustl.edu	37	3	51315127	51315127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.S922L	1.000	35	0%	50	32%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
WDR82	80335	genome.wustl.edu	37	3	52294458	52294458	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025222.3	-1	validated	p.F162	1.000	60	0%	67	37.3%	18	55.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
DNAH1	25981	genome.wustl.edu	37	3	52380551	52380551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.R574C	0.287	15	0%	45	24.4%	0	-	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	NULL
DNAH1	25981	genome.wustl.edu	37	3	52380743	52380743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.D638N	0.125	14	0%	50	40%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
NEK4	6787	genome.wustl.edu	37	3	52775500	52775500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003157.3	-1	validated	p.H674N	0.000	83	0%	132	30.3%	8	37.5%	possibly_damaging(0.44)	deleterious(0)	deleterious(0.588)	NULL
NEK4	6787	genome.wustl.edu	37	3	52786220	52786220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003157.3	-1	validated	p.N366H	0.977	415	0%	775	29.8%	6	16.6%	possibly_damaging(0.801)	deleterious(0)	deleterious(0.746)	NULL
NEK4	6787	genome.wustl.edu	37	3	52802595	52802595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003157.3	-1	validated	p.R40Q	0.000	128	0%	187	40.6%	4	50%	benign(0.054)	tolerated(0.44)	neutral(0.016)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ITIH1	3697	genome.wustl.edu	37	3	52817056	52817056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002215.2	+1	reviewed	p.Q338H	0.000	26	0%	43	30.2%	0	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CACNA1D	776	genome.wustl.edu	37	3	53806909	53806909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.A1385V	1.000	47	0%	86	32.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_SSF81324
ERC2	26059	genome.wustl.edu	37	3	56468670	56468670	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015576.1	-1	validated	p.G122	0.836	447	0%	519	68.4%	0	-	-	-	-	NULL
FHIT	2272	genome.wustl.edu	37	3	60522626	60522626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002012.2	-1	reviewed	p.A24T	0.998	117	0%	97	19.6%	4	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HIT,superfamily_HIT-like
PTPRG	5793	genome.wustl.edu	37	3	61975327	61975327	+	Silent	SNP	G	G	A	rs187568366	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002841.3	+1	reviewed	p.T73	0.001	126	0%	137	29.9%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRG	5793	genome.wustl.edu	37	3	62216942	62216942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002841.3	+1	reviewed	p.R778C	1.000	85	0%	56	32.1%	0	-	benign(0.071)	deleterious(0)	neutral(0.450)	NULL
PSMD6	9861	genome.wustl.edu	37	3	64008066	64008066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014814.1	-1	provisional	p.K93N	1.000	197	0%	257	31.5%	108	47.2%	benign(0.104)	deleterious(0.01)	neutral(0.414)	HMMPfam_RPN7
EPHA3	2042	genome.wustl.edu	37	3	89499420	89499420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005233.5	+1	reviewed	p.D864Y	1.000	114	0%	124	15.3%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PROS1	5627	genome.wustl.edu	37	3	93605283	93605283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000313.3	-1	reviewed	p.I407T	1.000	444	0%	443	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
ARL6	84100	genome.wustl.edu	37	3	97506959	97506959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032146.3	+1	reviewed	p.I159L	1.000	121	0%	93	16.1%	3	0%	possibly_damaging(0.753)	deleterious(0.03)	deleterious(0.641)	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR5H15	403274	genome.wustl.edu	37	3	97887735	97887735	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005515.1	+1	provisional	p.G64	0.000	603	0%	559	28.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5K4	403278	genome.wustl.edu	37	3	98073417	98073417	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005517.1	+1	provisional	p.T240	0.015	658	0%	556	29.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GPR128	84873	genome.wustl.edu	37	3	100364864	100364864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032787.2	+1	validated	p.S341L	0.010	47	0%	62	32.3%	0	-	benign(0.104)	tolerated(0.1)	neutral(0.294)	NULL
MYH15	22989	genome.wustl.edu	37	3	108172884	108172884	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.R810*	0.000	138	0%	106	41.5%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
GUCA1C	9626	genome.wustl.edu	37	3	108672498	108672498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005459.3	-1	validated	p.H38N	1.000	172	0%	186	32.8%	0	-	possibly_damaging(0.943)	deleterious(0.02)	deleterious(0.770)	superfamily_EF-hand
SLC9A10	285335	genome.wustl.edu	37	3	111936384	111936384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.K565N	0.893	165	0%	157	30.6%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	superfamily_Voltage-gated potassium channels
CD200	4345	genome.wustl.edu	37	3	112066432	112066432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004196.2	+1	reviewed	p.K175T	0.021	296	0.3%	245	32.2%	4	50%	benign(0.086)	tolerated(0.24)	neutral(0.044)	superfamily_SSF48726
CCDC80	151887	genome.wustl.edu	37	3	112357078	112357078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199511.1	-1	validated	p.A559T	0.312	166	0%	185	29.7%	12	0%	benign(0.007)	tolerated(0.34)	neutral(0.023)	NULL
TIGIT	201633	genome.wustl.edu	37	3	114014412	114014412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173799.3	+1	validated	p.E28K	0.000	280	0%	358	27.4%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_V-set,superfamily_Immunoglobulin
LSAMP	4045	genome.wustl.edu	37	3	115805269	115805269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002338.3	-1	reviewed	p.R97Q	1.000	94	0%	68	26.5%	1	0%	possibly_damaging(0.458)	tolerated(0.41)	neutral(0.165)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
TIMMDC1	51300	genome.wustl.edu	37	3	119222415	119222415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016589.3	+1	validated	p.R133C	1.000	30	0%	31	29%	82	52.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLQ	10721	genome.wustl.edu	37	3	121248606	121248606	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.E332*	1.000	62	0%	111	14.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC58	131076	genome.wustl.edu	37	3	122087074	122087074	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000479414	-1	known	p.E88*	1.000	165	0%	162	27.2%	59	40.6%	probably_damaging(0.991)	tolerated(0.24)	deleterious(0.481)	HMMPfam_Cid2
PARP14	54625	genome.wustl.edu	37	3	122432362	122432362	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017554.2	+1	validated	p.T1237	0.982	184	0%	168	33.3%	3	33.3%	-	-	-	HMMSmart_SM00506,superfamily_Macro domain-like
ADCY5	111	genome.wustl.edu	37	3	123036912	123036912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.L770P	0.999	16	0%	57	24.6%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MYLK	4638	genome.wustl.edu	37	3	123339180	123339180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053025.3	-1	reviewed	p.T1748A	1.000	161	0%	235	27.7%	18	22.2%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
ZNF148	7707	genome.wustl.edu	37	3	124952765	124952765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021964.2	-1	validated	p.R269C	1.000	198	0%	193	33.2%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TXNRD3NB	645840	genome.wustl.edu	37	3	126291080	126291080	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039783.1	-1	provisional	p.E103*	0.008	29	0%	49	36.7%	0	-	-	-	-	NULL
PLXND1	23129	genome.wustl.edu	37	3	129286396	129286396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015103.2	-1	validated	p.R1342H	1.000	13	0%	31	35.5%	34	44.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
NEK11	79858	genome.wustl.edu	37	3	130884308	130884308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024800.4	+1	reviewed	p.R374Q	0.538	88	0%	89	39.3%	8	62.5%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
STAG1	10274	genome.wustl.edu	37	3	136076581	136076581	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005862.2	-1	reviewed	p.R1016*	1.000	114	0%	139	30.9%	13	7.6%	-	-	-	NULL
CLDN18	51208	genome.wustl.edu	37	3	137743490	137743490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002026.2	+1	validated	p.L143M	1.000	138	0%	178	13.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PMP22_Claudin
ESYT3	83850	genome.wustl.edu	37	3	138188301	138188301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383175	+1	known	p.F488V	1.000	38	0%	75	41.3%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
COPB2	9276	genome.wustl.edu	37	3	139076716	139076716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004766.2	-1	validated	p.L904V	1.000	66	0%	105	39%	360	46.3%	benign(0.021)	tolerated(0.07)	neutral(0.320)	NULL
COPB2	9276	genome.wustl.edu	37	3	139085939	139085939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004766.2	-1	validated	p.D532N	1.000	196	0%	174	25.3%	87	48.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Coatomer_WDAD,superfamily_Amine_DH_B_like
RBP2	5948	genome.wustl.edu	37	3	139173580	139173580	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004164.2	-1	reviewed	p.K115	0.976	122	0%	157	32.5%	0	-	-	-	-	HMMPfam_Lipocalin,superfamily_Lipocalins
CLSTN2	64084	genome.wustl.edu	37	3	140123571	140123571	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022131.2	+1	validated	p.I200	0.817	139	0%	199	26.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TRIM42	287015	genome.wustl.edu	37	3	140397089	140397089	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152616.3	+1	reviewed	p.C6	0.516	356	0%	440	30%	1	100%	-	-	-	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141161981	141161981	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080412.2	+1	validated	p.E251*	0.865	142	0%	172	33.1%	0	-	-	-	-	NULL
RASA2	5922	genome.wustl.edu	37	3	141304903	141304903	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006506.2	+1	reviewed	p.S597A	1.000	42	0%	62	33.9%	3	100%	benign(0.045)	tolerated(0.35)	neutral(0.023)	HMMSmart_RasGAP,superfamily_Rho_GAP
XRN1	54464	genome.wustl.edu	37	3	142030361	142030361	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019001.3	-1	validated	p.S1705A	1.000	226	0%	178	34.8%	1	100%	benign(0.086)	tolerated(0.39)	neutral(0.022)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151155402	151155402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.R2316Q	0.999	235	0%	239	20.5%	0	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IGSF10	285313	genome.wustl.edu	37	3	151155468	151155468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.K2294T	0.000	207	0%	190	33.7%	0	-	benign(0.282)	tolerated(0.21)	neutral(0.131)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LEKR1	389170	genome.wustl.edu	37	3	156746030	156746030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004316.2	+1	validated	p.L199V	0.000	95	0%	80	10%	0	-	benign(0.218)	tolerated(0.3)	neutral(0.050)	NULL
C3orf55	152078	genome.wustl.edu	37	3	157289762	157289762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130002.1	+1	validated	p.D78N	0.000	15	0%	13	53.8%	0	-	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	NULL
RSRC1	51319	genome.wustl.edu	37	3	157840003	157840003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016625.2	+1	provisional	p.R37Q	1.000	150	0%	169	26%	6	83.3%	unknown(0)	deleterious(0.02)	-	NULL
GFM1	85476	genome.wustl.edu	37	3	158399904	158399904	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024996.5	+1	reviewed	p.F574	0.117	37	0%	49	32.7%	15	53.3%	-	-	-	HMMPfam_EFG_IV,superfamily_Ribosomal_S5_D2-typ_fold
TRIM59	286827	genome.wustl.edu	37	3	160156820	160156820	+	Missense_Mutation	SNP	C	C	T	rs139273294	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173084.2	-1	validated	p.R51Q	1.000	163	0%	181	30.9%	0	-	possibly_damaging(0.451)	tolerated(0.25)	neutral(0.184)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
SPTSSB	165679	genome.wustl.edu	37	3	161063940	161063940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040100.1	-1	validated	p.R58C	1.000	76	0%	72	26.4%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906868	164906868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.S584I	0.995	113	0%	132	40.9%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMSmart_LRRCT,superfamily_SSF52058
BCHE	590	genome.wustl.edu	37	3	165547596	165547596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000055.2	-1	reviewed	p.R409I	0.915	227	0%	190	34.7%	0	-	benign(0.031)	deleterious(0.01)	neutral(0.407)	HMMPfam_COesterase,superfamily_SSF53474
MYNN	55892	genome.wustl.edu	37	3	169496751	169496751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018657.3	+1	provisional	p.E154D	0.999	74	0%	76	39.5%	5	0%	possibly_damaging(0.643)	tolerated(0.35)	neutral(0.246)	NULL
PLD1	5337	genome.wustl.edu	37	3	171455341	171455341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002662.3	-1	validated	p.R90H	1.000	110	0%	117	27.4%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	rs121913287		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R88Q	1.000	171	0%	192	25.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.G118D	1.000	138	0%	132	37.1%	2	0%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	superfamily_SSF54236
ATP11B	23200	genome.wustl.edu	37	3	182554199	182554199	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.R165*	0.676	429	0%	355	32.7%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
MCF2L2	23101	genome.wustl.edu	37	3	183056613	183056613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015078.2	-1	validated	p.R154Q	0.999	107	0%	113	23.9%	0	-	possibly_damaging(0.458)	tolerated(0.5)	neutral(0.160)	HMMSmart_SM00516
KLHL6	89857	genome.wustl.edu	37	3	183226156	183226156	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130446.2	-1	validated	p.N200	1.000	122	0%	164	28.7%	0	-	-	-	-	HMMPfam_BACK
PARL	55486	genome.wustl.edu	37	3	183562032	183562032	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417784	-1	known	p.E11K	0.982	108	0%	161	36%	103	48.5%	-	-	-	HMMPfam_Rhomboid
HTR3E	285242	genome.wustl.edu	37	3	183821994	183821994	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182589.2	+1	reviewed	p.W117G	0.997	34	0%	63	36.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ECE2	9718	genome.wustl.edu	37	3	184003377	184003377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014693.3	+1	validated	p.K538N	1.000	35	0%	58	36.2%	0	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
VPS8	23355	genome.wustl.edu	37	3	184612549	184612549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009921.2	+1	validated	p.V614L	1.000	30	0%	21	38.1%	1	100%	benign(0.104)	tolerated(0.57)	neutral(0.014)	NULL
MASP1	5648	genome.wustl.edu	37	3	187003681	187003681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139125.3	-1	reviewed	p.R57W	1.000	187	0%	242	29.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
ATP13A5	344905	genome.wustl.edu	37	3	193048981	193048981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198505.2	-1	provisional	p.K464N	0.623	98	0%	108	34.3%	1	0%	benign(0.01)	tolerated(0.48)	neutral(0.011)	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
TMEM44	93109	genome.wustl.edu	37	3	194336413	194336413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138399.4	-1	validated	p.S266L	1.000	107	0%	195	32.3%	5	20%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MUC20	200958	genome.wustl.edu	37	3	195451792	195451792	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152673.2	+1	reviewed	p.I106	0.000	79	0%	193	19.2%	11	27.2%	-	-	-	NULL
ZNF141	7700	genome.wustl.edu	37	4	366775	366775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000240499	+1	known	p.F183L	0.001	301	0.3%	319	31.3%	0	-	possibly_damaging(0.792)	tolerated(0.65)	neutral(0.300)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF721	170960	genome.wustl.edu	37	4	435686	435686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133474.2	-1	validated	p.R857I	0.917	175	0%	208	38%	5	40%	benign(0.025)	tolerated(0.18)	neutral(0.057)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CPEB2	132864	genome.wustl.edu	37	4	15054149	15054149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182485.2	+1	reviewed	p.R326Q	1.000	159	0%	110	40%	0	-	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	superfamily_RNA-binding domain RBD
GBA3	57733	genome.wustl.edu	37	4	22749586	22749586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020973.3	+1	validated	p.E318D	0.170	80	0%	56	25%	0	-	benign(0)	tolerated(0.93)	-	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
SEL1L3	23231	genome.wustl.edu	37	4	25823689	25823689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015187.3	-1	validated	p.Y407H	1.000	59	0%	76	31.6%	23	39.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TBC1D19	55296	genome.wustl.edu	37	4	26638903	26638903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018317.2	+1	validated	p.R122Q	1.000	142	0%	151	27.8%	1	100%	benign(0.156)	tolerated(0.58)	neutral(0.019)	NULL
STIM2	57620	genome.wustl.edu	37	4	27019558	27019558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020860.3	+1	reviewed	p.R659Q	1.000	485	0%	423	31.2%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KLHL5	51088	genome.wustl.edu	37	4	39083717	39083717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015990.4	+1	validated	p.R326C	1.000	248	0.4%	210	31.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BACK
NSUN7	79730	genome.wustl.edu	37	4	40796409	40796409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024677.4	+1	validated	p.D400Y	1.000	110	0%	146	29.5%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
GRXCR1	389207	genome.wustl.edu	37	4	42895338	42895338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080476.1	+1	provisional	p.R19W	1.000	188	0%	141	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
YIPF7	285525	genome.wustl.edu	37	4	44638011	44638011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182592.2	-1	validated	p.A94T	0.997	126	0.8%	125	13.6%	0	-	benign(0)	tolerated(1)	-	NULL
GNPDA2	132789	genome.wustl.edu	37	4	44709820	44709820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138335.1	-1	provisional	p.D240N	1.000	118	0%	82	24.4%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like
GNPDA2	132789	genome.wustl.edu	37	4	44719247	44719247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138335.1	-1	provisional	p.D98N	1.000	113	0%	90	35.6%	2	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like
NIPAL1	152519	genome.wustl.edu	37	4	48037665	48037665	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207330.1	+1	provisional	p.L237	0.993	187	0%	186	12.4%	0	-	-	-	-	HMMPfam_DUF803
DCUN1D4	23142	genome.wustl.edu	37	4	52779734	52779734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040402.1	+1	validated	p.D288G	1.000	151	0%	130	30%	6	33.3%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
LRRC66	339977	genome.wustl.edu	37	4	52861244	52861244	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024611.1	-1	provisional	p.A648	0.000	187	0%	215	37.2%	0	-	-	-	-	NULL
FIP1L1	81608	genome.wustl.edu	37	4	54256766	54256766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030917.3	+1	reviewed	p.S159Y	1.000	188	0%	179	29.6%	11	36.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Fip1
LOC441016	441016	genome.wustl.edu	37	4	54441787	54441787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_496693.4	+1	model	p.A19T	0.093	18	0%	26	34.6%	0	-	-	-	-	NULL
PDCL2	132954	genome.wustl.edu	37	4	56435901	56435901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152401.2	-1	reviewed	p.H116N	1.000	24	0%	27	25.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd
STAP1	26228	genome.wustl.edu	37	4	68472019	68472019	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012108.2	+1	reviewed	p.E278*	0.995	79	0%	66	31.8%	1	0%	-	-	-	NULL
SULT1E1	6783	genome.wustl.edu	37	4	70707804	70707804	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005420.2	-1	reviewed	p.N265H	1.000	150	0%	160	10.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SULT1E1	6783	genome.wustl.edu	37	4	70721060	70721060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005420.2	-1	reviewed	p.R77Q	0.116	60	0%	68	42.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
MUC7	4589	genome.wustl.edu	37	4	71347160	71347160	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145006.1	+1	reviewed	p.E233	0.000	447	0%	334	16.8%	0	-	-	-	-	NULL
ENAM	10117	genome.wustl.edu	37	4	71508475	71508475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031889.2	+1	reviewed	p.K444N	0.982	379	0%	393	32.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MOB1B	92597	genome.wustl.edu	37	4	71841002	71841002	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173468.2	+1	reviewed	p.I136M	0.998	152	0%	148	27%	0	-	benign(0.062)	tolerated(0.05)	neutral(0.349)	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein
ADAMTS3	9508	genome.wustl.edu	37	4	73161399	73161399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014243.1	-1	reviewed	p.C899R	1.000	280	0%	226	32.3%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ANKRD17	26057	genome.wustl.edu	37	4	74043215	74043215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.E143D	1.000	296	0%	283	28.6%	1	0%	benign(0.055)	tolerated(1)	neutral(0.004)	NULL
RASSF6	166824	genome.wustl.edu	37	4	74450942	74450942	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201431.1	-1	validated	p.R206	0.003	269	0%	235	31.9%	0	-	-	-	-	NULL
CXCL1	2919	genome.wustl.edu	37	4	74735502	74735502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001511.2	+1	validated	p.E73K	0.987	75	0%	84	27.4%	140	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8,PatternScan_SMALL_CYTOKINES_CXC
FRAS1	80144	genome.wustl.edu	37	4	79321919	79321919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.S1335L	0.998	79	0%	67	37.3%	0	-	benign(0.273)	tolerated(0.13)	neutral(0.282)	NULL
GK2	2712	genome.wustl.edu	37	4	80327753	80327753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033214.2	-1	validated	p.F534L	0.994	322	0%	292	12.3%	0	-	benign(0)	tolerated(1)	-	NULL
BMP3	651	genome.wustl.edu	37	4	81967605	81967605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001201.2	+1	reviewed	p.R344W	0.989	186	0%	127	25.2%	0	-	benign(0.064)	tolerated(0.19)	neutral(0.054)	NULL
PRKG2	5593	genome.wustl.edu	37	4	82090832	82090832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006259.1	-1	provisional	p.R278K	1.000	169	0.6%	141	27.7%	0	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMSmart_cNMP,superfamily_cNMP_binding
LOC100287465	100287465	genome.wustl.edu	37	4	83411218	83411218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342457.1	+1	model	p.D40N	1.000	203	0%	235	31.9%	2	0%	-	-	-	NULL
SEC31A	22872	genome.wustl.edu	37	4	83770112	83770112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077207.1	-1	reviewed	p.R783C	1.000	115	0%	123	35%	42	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HELQ	113510	genome.wustl.edu	37	4	84369965	84369965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133636.2	-1	validated	p.L388I	1.000	128	0%	123	23.6%	0	-	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDFY3	23001	genome.wustl.edu	37	4	85731226	85731226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.R720Q	0.996	326	0%	214	28%	1	0%	probably_damaging(0.985)	tolerated(0.1)	deleterious(0.718)	superfamily_ARM repeat
SLC10A6	345274	genome.wustl.edu	37	4	87754546	87754546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197965.2	-1	validated	p.A137T	0.997	177	0%	206	33%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SBF
ABCG2	9429	genome.wustl.edu	37	4	89036122	89036122	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004827.2	-1	reviewed	p.E310	0.000	47	0%	74	28.4%	1	0%	-	-	-	NULL
MMRN1	22915	genome.wustl.edu	37	4	90816586	90816586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007351.2	+1	reviewed	p.S155F	0.009	151	0%	124	33.1%	1	0%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	NULL
TSPAN5	10098	genome.wustl.edu	37	4	99408005	99408005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005723.3	-1	reviewed	p.D55N	1.000	192	0%	300	36.7%	0	-	benign(0.104)	tolerated(0.25)	neutral(0.045)	HMMPfam_Tetraspannin
ADH1A	124	genome.wustl.edu	37	4	100205733	100205733	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000667.2	-1	reviewed	p.R130	0.893	116	0%	110	38.2%	0	-	-	-	-	superfamily_GroES-like,HMMPfam_ADH_N
BANK1	55024	genome.wustl.edu	37	4	102981537	102981537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017935.4	+1	reviewed	p.M713I	0.727	194	0%	141	27%	1	0%	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
CENPE	1062	genome.wustl.edu	37	4	104074301	104074301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.S1047Y	0.476	128	0%	89	27%	1	100%	possibly_damaging(0.951)	tolerated(0.06)	deleterious(0.717)	NULL
ELOVL6	79071	genome.wustl.edu	37	4	110980893	110980893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130721.1	-1	validated	p.R80Q	1.000	115	0.9%	161	31.1%	6	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ELO
ENPEP	2028	genome.wustl.edu	37	4	111430901	111430901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001977.3	+1	validated	p.E378K	0.988	204	0%	185	31.4%	0	-	probably_damaging(0.988)	tolerated(0.17)	deleterious(0.496)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
ALPK1	80216	genome.wustl.edu	37	4	113348783	113348783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102406.1	+1	validated	p.D253N	1.000	90	0%	111	28.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANK2	287	genome.wustl.edu	37	4	114264208	114264208	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514960	+1	known	p.R399W	1.000	254	0.4%	221	27.6%	1	0%	-	-	-	NULL
UGT8	7368	genome.wustl.edu	37	4	115544698	115544698	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128174.1	+1	validated	p.K221T	1.000	149	0%	119	14.3%	0	-	possibly_damaging(0.644)	deleterious(0)	deleterious(0.670)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
NDST3	9348	genome.wustl.edu	37	4	118975453	118975453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004784.2	+1	reviewed	p.L130I	1.000	213	0.5%	178	30.3%	0	-	benign(0.224)	tolerated(0.27)	neutral(0.056)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119947885	119947885	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133477.2	+1	validated	p.R121*	0.118	115	0%	113	38.9%	0	-	-	-	-	NULL
C4orf3	401152	genome.wustl.edu	37	4	120221530	120221530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399075	-1	known	p.F187S	0.624	209	0%	199	30.7%	308	41.5%	unknown(0)	deleterious(0.02)	-	NULL
TRPC3	7222	genome.wustl.edu	37	4	122833213	122833213	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130698.1	-1	validated	p.F459	0.994	88	0%	79	13.9%	0	-	-	-	-	NULL
TRPC3	7222	genome.wustl.edu	37	4	122853674	122853674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130698.1	-1	validated	p.E247K	1.000	47	0%	78	25.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
KIAA1109	84162	genome.wustl.edu	37	4	123164181	123164181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.S1567Y	1.000	229	0%	179	11.2%	0	-	benign(0.148)	deleterious(0.04)	neutral(0.362)	NULL
BBS12	166379	genome.wustl.edu	37	4	123663963	123663963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152618.2	+1	reviewed	p.K306Q	0.000	80	0%	120	27.5%	1	100%	benign(0.006)	tolerated(0.58)	neutral(0.005)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
FAT4	79633	genome.wustl.edu	37	4	126369696	126369696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.N2509H	0.175	124	0%	90	41.1%	0	-	benign(0.101)	tolerated(0.07)	neutral(0.327)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126411420	126411420	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.A4481	0.167	176	0%	180	27.2%	0	-	-	-	-	NULL
PLK4	10733	genome.wustl.edu	37	4	128806961	128806961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014264.3	+1	reviewed	p.R146C	0.151	196	0%	205	27.8%	6	66.6%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LARP1B	55132	genome.wustl.edu	37	4	129019373	129019373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018078.2	+1	reviewed	p.R234Q	0.998	75	0%	102	34.3%	3	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
PCDH18	54510	genome.wustl.edu	37	4	138450798	138450798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019035.3	-1	reviewed	p.E815D	1.000	93	0%	85	30.6%	0	-	probably_damaging(0.996)	tolerated(0.4)	deleterious(0.478)	NULL
ELMOD2	255520	genome.wustl.edu	37	4	141461345	141461345	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153702.2	+1	validated	p.T141	0.057	159	0%	180	18.3%	18	5.5%	-	-	-	HMMPfam_ELMO_CED12
SMARCA5	8467	genome.wustl.edu	37	4	144468561	144468561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003601.2	+1	reviewed	p.E893K	1.000	351	0%	215	36.7%	117	52.9%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Homeodomain_like,superfamily_SSF52540
MAB21L2	10586	genome.wustl.edu	37	4	151504540	151504540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006439.4	+1	reviewed	p.S120L	1.000	83	0%	122	28.7%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_Mab-21
PET112	5188	genome.wustl.edu	37	4	152609907	152609907	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510720	-1	known	p.R67W	1.000	44	0%	75	34.7%	23	26%	-	-	-	HMMPfam_GatB
FBXW7	55294	genome.wustl.edu	37	4	153249385	153249385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.R465C	1.000	409	0%	310	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KIAA0922	23240	genome.wustl.edu	37	4	154512292	154512292	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015196.3	+1	validated	p.I585	0.000	145	0.7%	159	31.4%	0	-	-	-	-	NULL
RNF175	285533	genome.wustl.edu	37	4	154636776	154636776	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173662.2	-1	validated	p.S223	0.000	75	0%	85	30.6%	5	20%	-	-	-	superfamily_RING/U-box
PLRG1	5356	genome.wustl.edu	37	4	155463404	155463404	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002669.2	-1	provisional	p.R208*	1.000	205	0%	157	25.5%	18	11.1%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FAM198B	51313	genome.wustl.edu	37	4	159048640	159048640	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031700.2	-1	validated	p.I501	0.800	336	0%	308	23.4%	4	0%	-	-	-	NULL
RXFP1	59350	genome.wustl.edu	37	4	159520411	159520411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440678	+1	known	p.L101I	0.995	53	0%	41	26.8%	0	-	-	-	-	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160271394	160271394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014247.2	+1	validated	p.S1112L	1.000	85	0%	71	29.6%	1	100%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
FSTL5	56884	genome.wustl.edu	37	4	163032496	163032496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020116.3	-1	validated	p.S18L	0.590	211	0%	187	26.2%	0	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
TRIM60	166655	genome.wustl.edu	37	4	165962176	165962176	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152620.2	+1	reviewed	p.R318*	0.006	97	0%	150	31.3%	0	-	-	-	-	HMMSmart_PRY
KLHL2	11275	genome.wustl.edu	37	4	166231874	166231874	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007246.3	+1	validated	p.Y403	0.998	525	0%	523	36.1%	11	63.6%	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
CPE	1363	genome.wustl.edu	37	4	166408731	166408731	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001873.2	+1	reviewed	e6+2	1.000	97	0%	102	27.5%	0	-	-	-	-	-
GALNT7	51809	genome.wustl.edu	37	4	174219449	174219449	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017423.2	+1	reviewed	e6+1	1.000	87	0%	89	32.6%	0	-	-	-	-	-
ASB5	140458	genome.wustl.edu	37	4	177142387	177142387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080874.2	-1	reviewed	p.E197*	1.000	138	0%	146	30.8%	0	-	-	-	-	HMMPfam_Ank,superfamily_Ankyrin repeat
WWC2	80014	genome.wustl.edu	37	4	184190176	184190176	+	Missense_Mutation	SNP	C	C	T	rs192456369	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024949.5	+1	validated	p.R754C	1.000	483	0%	503	31.4%	0	-	probably_damaging(0.955)	tolerated(0.22)	neutral(0.441)	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
STOX2	56977	genome.wustl.edu	37	4	184930789	184930789	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020225.1	+1	provisional	p.F266	0.831	54	0%	69	27.5%	0	-	-	-	-	NULL
SLC6A3	6531	genome.wustl.edu	37	5	1422128	1422128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044.4	-1	reviewed	p.R219C	1.000	5	0.000	19	0.526	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
ADCY2	108	genome.wustl.edu	37	5	7743841	7743841	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020546.2	+1	reviewed	p.F644	0.974	384	0%	348	35.6%	0	-	-	-	-	NULL
TAS2R1	50834	genome.wustl.edu	37	5	9629892	9629892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019599.2	-1	reviewed	p.L85I	0.000	122	0%	131	37.4%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_TAS2R,superfamily_SSF81321
DNAH5	1767	genome.wustl.edu	37	5	13700829	13700829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.R4548M	1.000	252	0%	269	16.7%	0	-	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13735963	13735963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.R3845H	1.000	289	0%	254	36.2%	1	0%	possibly_damaging(0.884)	tolerated(0.12)	deleterious(0.605)	NULL
MARCH11	441061	genome.wustl.edu	37	5	16177968	16177968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102562.1	-1	provisional	p.R187Q	1.000	64	0%	64	39.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00744,HMMPfam_zf-C3HC4
CDH12	1010	genome.wustl.edu	37	5	21783489	21783489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004061.3	-1	reviewed	p.F457L	1.000	198	0%	167	31.7%	0	-	benign(0.002)	tolerated(0.29)	neutral(0.029)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH12	1010	genome.wustl.edu	37	5	21802423	21802423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004061.3	-1	reviewed	p.T370M	0.996	173	1.7%	122	32%	0	-	possibly_damaging(0.458)	tolerated(0.24)	neutral(0.188)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH10	1008	genome.wustl.edu	37	5	24511481	24511481	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006727.2	-1	reviewed	p.I319	0.007	240	0%	198	33.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH9	1007	genome.wustl.edu	37	5	26906918	26906918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.D185Y	0.999	109	0%	63	39.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SLC45A2	51151	genome.wustl.edu	37	5	33954545	33954545	+	Missense_Mutation	SNP	C	C	T	rs142299109	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016180.3	-1	reviewed	p.R318H	1.000	62	0%	75	25.3%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_MFS general substrate transporter
RAI14	26064	genome.wustl.edu	37	5	34830830	34830830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145525.1	+1	validated	p.Q971L	1.000	117	0%	158	28.5%	48	52%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
IL7R	3575	genome.wustl.edu	37	5	35857130	35857130	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002185.2	+1	reviewed	p.V17	0.363	190	0%	243	29.2%	0	-	-	-	-	NULL
IL7R	3575	genome.wustl.edu	37	5	35867468	35867468	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002185.2	+1	reviewed	p.I94	0.736	139	0%	125	30.4%	0	-	-	-	-	NULL
LMBRD2	92255	genome.wustl.edu	37	5	36122537	36122537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007527.1	-1	validated	p.R322Q	1.000	98	0%	82	41.5%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_LMBR1
NUP155	9631	genome.wustl.edu	37	5	37303002	37303002	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153485.1	-1	reviewed	p.I1109S	1.000	119	0%	155	28.4%	11	36.3%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Nucleoporin
OSMR	9180	genome.wustl.edu	37	5	38904490	38904490	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003999.2	+1	reviewed	p.F390	0.005	119	0%	120	10.8%	1	0%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
RICTOR	253260	genome.wustl.edu	37	5	38950385	38950385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.F1189V	0.999	470	0%	387	31.3%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	superfamily_ARM repeat
DAB2	1601	genome.wustl.edu	37	5	39382955	39382955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.S369L	0.838	159	0%	162	28.4%	4	0%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
DAB2	1601	genome.wustl.edu	37	5	39383332	39383332	+	Silent	SNP	G	G	A	rs145830813	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.I243	1.000	206	0%	224	33.9%	2	0%	-	-	-	NULL
CARD6	84674	genome.wustl.edu	37	5	40843441	40843441	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.E157	0.032	100	0%	123	14.6%	0	-	-	-	-	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41004876	41004876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.K1337N	1.000	108	0%	117	15.4%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_ARM repeat
SEPP1	6414	genome.wustl.edu	37	5	42807137	42807137	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093726.1	-1	reviewed	p.G123*	0.979	199	0%	203	28.6%	3	33.3%	-	-	-	HMMPfam_SelP_N
NNT	23530	genome.wustl.edu	37	5	43653235	43653235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012343.3	+1	reviewed	p.A660E	1.000	38	0%	46	13%	17	29.4%	benign(0.403)	deleterious(0.02)	deleterious(0.512)	HMMPfam_PNTB
DDX4	54514	genome.wustl.edu	37	5	55083825	55083825	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024415.2	+1	validated	p.F390C	1.000	137	0%	133	34.6%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX4	54514	genome.wustl.edu	37	5	55088604	55088604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024415.2	+1	validated	p.F480L	1.000	145	0%	156	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC345645	345645	genome.wustl.edu	37	5	55572256	55572256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342506.1	-1	model	p.R54I	1.000	61	0%	79	10.1%	0	-	-	-	-	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56167798	56167798	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005921.1	+1	validated	p.S455R	1.000	215	0%	161	26.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_RING,superfamily_SSF57850
CD180	4064	genome.wustl.edu	37	5	66479890	66479890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005582.2	-1	validated	p.E261K	0.000	230	0%	222	32%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	superfamily_L domain-like
MARVELD2	153562	genome.wustl.edu	37	5	68715232	68715232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038603.2	+1	validated	p.S7F	0.879	87	0%	115	33.9%	2	100%	unknown(0)	tolerated(0.06)	-	NULL
FCHO2	115548	genome.wustl.edu	37	5	72302290	72302290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138782.2	+1	validated	p.K172E	1.000	20	0%	26	26.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FCHO2	115548	genome.wustl.edu	37	5	72383526	72383526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138782.2	+1	validated	p.E786K	1.000	148	0%	130	40%	4	75%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
POLK	51426	genome.wustl.edu	37	5	74879241	74879241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016218.2	+1	validated	p.K353T	1.000	95	0%	97	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IMS,superfamily_DNA/RNA polymerases
SV2C	22987	genome.wustl.edu	37	5	75428097	75428097	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014979.1	+1	provisional	p.F174	0.989	179	0%	128	39.8%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75885466	75885466	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006633.2	+1	validated	p.E185*	1.000	31	0%	41	29.3%	0	-	-	-	-	superfamily_Calponin-homology domain CH-domain
IQGAP2	10788	genome.wustl.edu	37	5	75970448	75970448	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006633.2	+1	validated	p.H1147	0.070	332	0%	332	26.5%	3	100%	-	-	-	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
F2R	2149	genome.wustl.edu	37	5	76029225	76029225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001992.3	+1	reviewed	p.S392F	0.000	63	0%	67	38.8%	3	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_SSF81321
PDE8B	8622	genome.wustl.edu	37	5	76624876	76624876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003719.2	+1	validated	p.S215L	1.000	74	0%	71	38%	0	-	benign(0.045)	deleterious(0.03)	neutral(0.367)	HMMPfam_Response_reg
WDR41	55255	genome.wustl.edu	37	5	76754915	76754915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018268.2	-1	validated	p.R128I	0.914	155	0%	99	34.3%	8	50%	benign(0.002)	tolerated(0.06)	neutral(0.323)	HMMSmart_WD40,superfamily_WD40_like
JMY	133746	genome.wustl.edu	37	5	78596648	78596648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152405.4	+1	validated	p.R615W	1.000	122	0%	98	16.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JMY	133746	genome.wustl.edu	37	5	78608307	78608307	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152405.4	+1	validated	p.R684*	1.000	334	0%	346	33.2%	0	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79027465	79027465	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.P959	0.000	196	0%	258	19%	0	-	-	-	-	NULL
SERINC5	256987	genome.wustl.edu	37	5	79473811	79473811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178276.5	-1	validated	p.V91M	1.000	58	0%	87	34.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serinc
SPZ1	84654	genome.wustl.edu	37	5	79616235	79616235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032567.3	+1	validated	p.Q67H	0.078	281	0.4%	360	28.9%	0	-	possibly_damaging(0.598)	deleterious(0.02)	deleterious(0.590)	NULL
CKMT2	1160	genome.wustl.edu	37	5	80562071	80562071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099735.1	+1	reviewed	p.K418N	0.516	238	0%	242	31%	5	60%	possibly_damaging(0.515)	deleterious(0.01)	deleterious(0.579)	superfamily_SSF55931
ATP6AP1L	92270	genome.wustl.edu	37	5	81614108	81614108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017971.1	+1	provisional	p.I222L	0.000	82	0%	83	37.3%	7	42.8%	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
GPR98	84059	genome.wustl.edu	37	5	89933626	89933626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.A701S	0.923	123	0%	104	34.6%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
GPR98	84059	genome.wustl.edu	37	5	89971105	89971105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.A1719V	0.007	55	0%	55	34.5%	0	-	benign(0.025)	tolerated(0.36)	neutral(0.021)	HMMSmart_SM00237
ST8SIA4	7903	genome.wustl.edu	37	5	100191972	100191972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005668.4	-1	reviewed	p.F211C	1.000	262	0%	220	32.7%	1	0%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Glyco_transf_29
FBXL17	64839	genome.wustl.edu	37	5	107521821	107521821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000496714	-1	known	p.D183G	1.000	40	0%	57	26.3%	4	25%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF52047
MAN2A1	4124	genome.wustl.edu	37	5	109190857	109190857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002372.2	+1	reviewed	p.S998L	0.136	86	0%	79	31.6%	7	85.7%	benign(0)	tolerated(0.08)	neutral(0.300)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
WDR36	134430	genome.wustl.edu	37	5	110446885	110446885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139281.2	+1	reviewed	p.A598T	1.000	326	0%	231	31.2%	3	100%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_WD40_like
APC	324	genome.wustl.edu	37	5	112174166	112174166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.S959P	1.000	167	0%	194	42.3%	0	-	possibly_damaging(0.694)	tolerated(0.23)	neutral(0.290)	NULL
APC	324	genome.wustl.edu	37	5	112174518	112174518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.P1076L	0.027	183	0%	233	29.6%	0	-	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
SEMA6A	57556	genome.wustl.edu	37	5	115813618	115813618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020796.3	-1	validated	p.C525G	1.000	229	0%	230	14.8%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat
FTMT	94033	genome.wustl.edu	37	5	121188335	121188335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177478.1	+1	validated	p.A226V	0.974	139	0%	136	32.4%	0	-	possibly_damaging(0.808)	deleterious(0.01)	deleterious(0.710)	superfamily_Ferritin/RR_like
ZNF474	133923	genome.wustl.edu	37	5	121488227	121488227	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207317.1	+1	provisional	p.L181R	0.006	153	0%	152	36.2%	0	-	possibly_damaging(0.669)	tolerated(0.53)	neutral(0.244)	NULL
SLC27A6	28965	genome.wustl.edu	37	5	128324429	128324429	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017372.1	+1	reviewed	p.G274	0.955	262	0%	286	32.5%	2	100%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
SLC27A6	28965	genome.wustl.edu	37	5	128326057	128326057	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017372.1	+1	reviewed	p.K290T	1.000	99	0%	125	39.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AMP-binding,superfamily_SSF56801
ADAMTS19	171019	genome.wustl.edu	37	5	128984591	128984591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.Q696E	1.000	287	0%	237	22.8%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZCCHC10	54819	genome.wustl.edu	37	5	132334466	132334466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017665.1	-1	provisional	p.T108A	0.680	93	0%	98	37.8%	11	45.4%	unknown(0)	-	-	NULL
TIFAB	497189	genome.wustl.edu	37	5	134785161	134785161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099221.1	-1	validated	p.P157S	0.001	33	0%	51	23.5%	1	0%	unknown(0)	tolerated(0.34)	-	NULL
TGFBI	7045	genome.wustl.edu	37	5	135389745	135389745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509485	+1	known	p.W38*	1.000	84	0%	141	22%	18	0%	benign(0.054)	deleterious(0.01)	neutral(0.409)	HMMPfam_Fasciclin,superfamily_FAS1 domain
TRPC7	57113	genome.wustl.edu	37	5	135651465	135651465	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503275	-1	known	p.R261*	0.991	45	0%	64	28.1%	0	-	-	-	-	NULL
PCDHA1	56147	genome.wustl.edu	37	5	140167022	140167022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018900.2	+1	reviewed	p.G383R	1.000	75	0%	146	35.6%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA2	56146	genome.wustl.edu	37	5	140175879	140175879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018905.2	+1	reviewed	p.E444K	0.002	53	0%	99	18.2%	0	-	possibly_damaging(0.803)	tolerated(0.2)	neutral(0.351)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB2	56133	genome.wustl.edu	37	5	140475258	140475258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018936.2	+1	reviewed	p.R295Q	0.000	142	0%	205	34.1%	9	0%	benign(0.003)	tolerated(0.61)	neutral(0.004)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140559775	140559775	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.A720	0.000	49	0%	98	24.5%	1	0%	-	-	-	NULL
PCDHB16	57717	genome.wustl.edu	37	5	140562255	140562255	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020957.1	+1	reviewed	p.R41	0.018	72	0%	115	22.6%	0	-	-	-	-	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580339	140580339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018931.2	+1	reviewed	p.S331Y	0.000	173	0%	237	32.1%	0	-	possibly_damaging(0.611)	deleterious(0)	deleterious(0.656)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140589331	140589331	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018932.3	+1	reviewed	p.A284	0.000	144	0%	256	16%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140603120	140603120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018934.2	+1	reviewed	p.L15I	0.000	74	0%	102	25.5%	0	-	benign(0.096)	tolerated(0.13)	neutral(0.260)	NULL
PCDHGA5	56110	genome.wustl.edu	37	5	140744574	140744574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.T226M	0.004	46	0%	83	19.3%	0	-	benign(0.006)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140773387	140773387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032088.1	+1	reviewed	p.S336L	0.000	87	0%	165	10.9%	0	-	benign(0.023)	tolerated(0.08)	neutral(0.301)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140773459	140773459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032088.1	+1	reviewed	p.S360Y	1.000	65	0%	103	28.2%	0	-	possibly_damaging(0.44)	deleterious(0)	deleterious(0.588)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140780023	140780023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018925.2	+1	reviewed	p.C777R	0.008	110	0%	217	26.3%	1	0%	-	-	-	NULL
PCDHGB5	56101	genome.wustl.edu	37	5	140780136	140780136	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032099.1	+1	reviewed	p.F814	0.005	61	0%	98	34.7%	0	-	-	-	-	NULL
PCDHGA12	26025	genome.wustl.edu	37	5	140812447	140812447	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003735.2	+1	reviewed	p.F707	0.663	63	0%	140	33.6%	0	-	-	-	-	NULL
PCDHGA12	26025	genome.wustl.edu	37	5	140812690	140812690	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003735.2	+1	reviewed	p.S788	0.906	109	0%	169	39.6%	1	0%	-	-	-	NULL
HDAC3	8841	genome.wustl.edu	37	5	141005270	141005270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003883.3	-1	reviewed	p.E347D	1.000	86	0%	158	13.3%	69	20.2%	benign(0.011)	tolerated(0.39)	neutral(0.017)	superfamily_Arginase/deacetylase
GNPDA1	10007	genome.wustl.edu	37	5	141391505	141391505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005471.4	-1	validated	p.E32D	0.860	40	0%	43	37.2%	22	36.3%	benign(0)	tolerated(1)	-	HMMPfam_Glucosamine_iso,superfamily_SSF100950
GRXCR2	643226	genome.wustl.edu	37	5	145252389	145252389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080516.1	-1	provisional	p.E48G	1.000	210	0%	241	32.4%	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
DPYSL3	1809	genome.wustl.edu	37	5	146773638	146773638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001387.2	-1	validated	p.A558V	0.998	51	0%	66	39.4%	3	33.3%	benign(0.007)	tolerated(0.2)	neutral(0.049)	NULL
SCGB3A2	117156	genome.wustl.edu	37	5	147261026	147261026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054023.4	+1	reviewed	p.N25D	0.048	296	0%	334	28.7%	0	-	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
SPINK7	84651	genome.wustl.edu	37	5	147695204	147695204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032566.2	+1	validated	p.K72I	0.998	105	0%	118	37.3%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Kazal_1,HMMSmart_KAZAL,superfamily_SSF100895
PDGFRB	5159	genome.wustl.edu	37	5	149500463	149500463	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002609.3	-1	reviewed	p.I858	1.000	12	0%	22	27.3%	6	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ZNF300	91975	genome.wustl.edu	37	5	150276037	150276037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052860.2	-1	reviewed	p.S255F	0.000	472	0%	396	27.8%	1	0%	probably_damaging(0.964)	tolerated(0.7)	neutral(0.408)	superfamily_C2H2 and C2HC zinc fingers
FAT2	2196	genome.wustl.edu	37	5	150923147	150923147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.G2514D	1.000	186	0%	277	20.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150942966	150942966	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.D1165A	1.000	36	0%	57	10.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150947662	150947662	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.V277	0.814	66	0%	86	34.9%	0	-	-	-	-	superfamily_Cadherin-like
KIF4B	285643	genome.wustl.edu	37	5	154393811	154393811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099293.1	+1	provisional	p.D131G	1.000	164	0%	259	36.7%	0	-	possibly_damaging(0.73)	deleterious(0.01)	deleterious(0.672)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KCNMB1	3779	genome.wustl.edu	37	5	169812344	169812344	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004137.2	-1	reviewed	p.T36	0.034	15	0%	47	21.3%	8	0%	-	-	-	HMMPfam_CaKB
NSD1	64324	genome.wustl.edu	37	5	176683967	176683967	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.F1594C	1.000	157	0%	227	34.8%	5	80%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00249
NSD1	64324	genome.wustl.edu	37	5	176710828	176710828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.R2017Q	1.000	287	0%	320	33.4%	12	58.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
CNOT6	57472	genome.wustl.edu	37	5	179980414	179980414	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015455.3	+1	reviewed	p.R110*	1.000	76	0%	91	28.6%	5	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
BTNL3	10917	genome.wustl.edu	37	5	180432368	180432368	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197975.1	+1	validated	p.P299	0.000	165	0%	291	34.7%	0	-	-	-	-	HMMSmart_PRY
MYLK4	340156	genome.wustl.edu	37	6	2675340	2675340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012418.3	-1	validated	p.E354K	0.999	60	0%	70	38.6%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SYCP2L	221711	genome.wustl.edu	37	6	10894348	10894348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040274.2	+1	validated	p.S83P	0.818	109	0%	135	23%	1	100%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12120616	12120616	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.F196	0.616	293	0%	365	30.7%	0	-	-	-	-	NULL
CCDC90A	63933	genome.wustl.edu	37	6	13801587	13801587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031713.2	-1	validated	p.A225V	0.991	126	0%	122	35.2%	65	52.3%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_DUF1640
MBOAT1	154141	genome.wustl.edu	37	6	20109846	20109846	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080480.1	-1	provisional	p.P448	0.353	133	0%	156	25.6%	17	35.2%	-	-	-	NULL
FKSG83	387316	genome.wustl.edu	37	6	27293585	27293585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032030.2	+1	validated	p.R175I	0.000	107	0%	99	30.3%	0	-	-	-	-	NULL
OR2J3	442186	genome.wustl.edu	37	6	29079940	29079940	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005216.2	+1	validated	p.P91	0.000	666	0%	530	32.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2H2	7932	genome.wustl.edu	37	6	29555794	29555794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007160.3	+1	provisional	p.L25I	0.839	438	0%	483	31.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Family A G protein-coupled receptor-like
TRIM31	11074	genome.wustl.edu	37	6	30080282	30080282	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007028.3	-1	reviewed	p.M101L	0.007	148	0%	198	36.9%	1	0%	benign(0.016)	tolerated(0.11)	neutral(0.272)	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_RING/U-box
VARS2	57176	genome.wustl.edu	37	6	30883636	30883636	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020442.4	+1	validated	p.L166	0.213	59	0%	155	32.9%	8	50%	-	-	-	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
MSH5	4439	genome.wustl.edu	37	6	31711941	31711941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025259.5	+1	reviewed	p.P188L	0.077	220	0%	324	38.3%	0	-	benign(0.007)	tolerated(0.2)	neutral(0.049)	NULL
HSPA1L	3305	genome.wustl.edu	37	6	31778028	31778028	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005527.3	-1	reviewed	p.D574	0.018	136	0%	304	33.9%	2	50%	-	-	-	HMMPfam_HSP70,superfamily_SSF100934
RNF5	6048	genome.wustl.edu	37	6	32146373	32146373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006913.3	+1	reviewed	p.I29L	1.000	31	0%	29	24.1%	79	50.6%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
NOTCH4	4855	genome.wustl.edu	37	6	32169955	32169955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004557.3	-1	reviewed	p.S1218Y	0.892	27	0%	80	30%	2	0%	possibly_damaging(0.924)	tolerated(0.42)	neutral(0.387)	HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain
HLA-DMA	3108	genome.wustl.edu	37	6	32917167	32917167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006120.3	-1	reviewed	p.N221S	0.484	52	0%	57	35.1%	289	38%	benign(0.089)	tolerated(0.71)	neutral(0.008)	NULL
BRD2	6046	genome.wustl.edu	37	6	32948136	32948136	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000449025	+1	known	p.W727*	1.000	243	0%	329	28.6%	182	44.5%	unknown(0)	deleterious(0.01)	-	NULL
BRD2	6046	genome.wustl.edu	37	6	32948431	32948432	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113182.1	+1	reviewed	p.D782fs	1.000:0.281	-	-	-	-	-	-	-	-	-	NULL
COL11A2	1302	genome.wustl.edu	37	6	33154424	33154424	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080680.2	-1	reviewed	p.N260H	0.996	49	0%	73	37%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
SCUBE3	222663	genome.wustl.edu	37	6	35212477	35212477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152753.2	+1	provisional	p.R764C	1.000	70	0%	131	10.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3
FKBP5	2289	genome.wustl.edu	37	6	35543629	35543629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145775.1	-1	reviewed	p.P453S	0.000	164	0%	225	11.1%	1	0%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38866033	38866033	+	Splice_Site	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	e57-1	0.999	252	0%	198	27.3%	0	-	-	-	-	-
UBR2	23304	genome.wustl.edu	37	6	42600342	42600342	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015255.2	+1	reviewed	p.F445C	1.000	86	0%	93	36.6%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
XPO5	57510	genome.wustl.edu	37	6	43515352	43515352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020750.2	-1	validated	p.R718H	1.000	44	0%	84	22.6%	13	46.1%	possibly_damaging(0.923)	-	-	superfamily_ARM repeat
VEGFA	7422	genome.wustl.edu	37	6	43745252	43745252	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025366.2	+1	reviewed	p.I235	0.077	22	0%	69	34.8%	53	41.5%	-	-	-	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
HSP90AB1	3326	genome.wustl.edu	37	6	44218900	44218900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007355.2	+1	provisional	p.R358H	1.000	175	0%	347	31.4%	881	49%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_HSP90
TCTE1	202500	genome.wustl.edu	37	6	44255515	44255515	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182539.3	-1	validated	p.S16	0.080	10	0%	33	30.3%	1	0%	-	-	-	NULL
MUT	4594	genome.wustl.edu	37	6	49419303	49419303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000255.3	-1	reviewed	p.R403Q	1.000	191	0%	199	28.1%	12	50%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_MM_CoA_mutase,PatternScan_METMALONYL_COA_MUTASE,superfamily_Cobalamin (vitamin B12)-dependent enzymes
PKHD1	5314	genome.wustl.edu	37	6	51890904	51890904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.R1235Q	0.009	132	0%	124	33.9%	0	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
BMP5	653	genome.wustl.edu	37	6	55684513	55684513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021073.2	-1	reviewed	p.R208Q	1.000	136	0%	127	24.4%	0	-	possibly_damaging(0.843)	tolerated(0.36)	neutral(0.343)	HMMPfam_TGFb_propeptide
BEND6	221336	genome.wustl.edu	37	6	56846689	56846689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152731.2	+1	validated	p.M27I	1.000	395	0%	409	28.6%	0	-	benign(0.022)	tolerated(0.74)	neutral(0.003)	NULL
ZNF451	26036	genome.wustl.edu	37	6	57012178	57012178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031623.2	+1	validated	p.S432Y	0.016	278	0.4%	265	37.4%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
PRIM2	5558	genome.wustl.edu	37	6	57372328	57372328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425433	+1	known	p.R245I	1.000	161	0%	134	11.9%	15	0%	-	-	-	HMMPfam_DNA_primase_lrg
KHDRBS2	202559	genome.wustl.edu	37	6	62757802	62757802	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152688.2	-1	validated	p.S106*	1.000	331	0%	254	26%	0	-	-	-	-	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
PHF3	23469	genome.wustl.edu	37	6	64416666	64416666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.R1204Q	1.000	199	0%	186	37.1%	1	100%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73843172	73843172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019842.3	+1	reviewed	p.R426C	1.000	98	0%	89	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73900379	73900379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019842.3	+1	reviewed	p.S554Y	1.000	63	0%	65	29.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_KCNQ_channel
LCA5	167691	genome.wustl.edu	37	6	80196939	80196939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122769.2	-1	reviewed	p.S626A	0.000	325	0%	279	31.2%	1	0%	possibly_damaging(0.473)	tolerated(0.52)	neutral(0.165)	NULL
UFL1	23376	genome.wustl.edu	37	6	97001363	97001363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015323.4	+1	validated	p.S790F	1.000	94	0%	60	35%	10	60%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
SIM1	6492	genome.wustl.edu	37	6	100838682	100838682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005068.2	-1	reviewed	p.C619F	1.000	209	0%	146	24.7%	0	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	HMMPfam_SIM_C
SNX3	8724	genome.wustl.edu	37	6	108544222	108544222	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003795.4	-1	reviewed	p.E64*	1.000	40	0%	55	40%	69	8.6%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
LACE1	246269	genome.wustl.edu	37	6	108645237	108645237	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145315.3	+1	reviewed	p.E116D	0.048	124	0%	189	32.8%	0	-	benign(0.018)	tolerated(0.55)	neutral(0.007)	superfamily_SSF52540
SLC16A10	117247	genome.wustl.edu	37	6	111543325	111543325	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018593.4	+1	validated	p.E479*	0.762	178	0%	189	31.7%	2	0%	-	-	-	superfamily_MFS_gen_substrate_transporter
HS3ST5	222537	genome.wustl.edu	37	6	114379326	114379326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153612.3	-1	validated	p.R46*	0.984	58	0%	60	31.7%	0	-	-	-	-	NULL
SLC35F1	222553	genome.wustl.edu	37	6	118588241	118588241	+	Silent	SNP	C	C	T	rs188928224	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029858.3	+1	validated	p.I187	0.121	325	0%	315	22.2%	0	-	-	-	-	HMMPfam_DUF914
SLC35F1	222553	genome.wustl.edu	37	6	118588247	118588247	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029858.3	+1	validated	p.I189	0.428	313	0.3%	315	38.4%	0	-	-	-	-	HMMPfam_DUF914
TRDN	10345	genome.wustl.edu	37	6	123760118	123760118	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006073.2	-1	validated	p.K321T	1.000	9	0.000	16	0.375	0	-	unknown(0)	tolerated(0.63)	-	NULL
RNF217	154214	genome.wustl.edu	37	6	125404013	125404013	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432968	+1	known	p.L228*	1.000	109	0%	91	26.4%	4	25%	-	-	-	NULL
NCOA7	135112	genome.wustl.edu	37	6	126210977	126210977	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181782.3	+1	validated	p.L593	0.000	202	0%	196	34.2%	2	0%	-	-	-	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127771328	127771328	+	Missense_Mutation	SNP	C	C	A	rs192736673	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014702.4	-1	validated	p.R102I	0.000	231	0%	217	36.9%	0	-	benign(0.343)	tolerated(0.17)	neutral(0.167)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129687474	129687474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.Y1610H	0.998	56	0%	55	29.1%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I
ARHGAP18	93663	genome.wustl.edu	37	6	129955211	129955211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033515.2	-1	validated	p.E198*	1.000	133	0%	122	11.5%	0	-	-	-	-	NULL
MOXD1	26002	genome.wustl.edu	37	6	132713400	132713400	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392401	-1	known	p.A101	0.628	31	0%	44	31.8%	0	-	-	-	-	NULL
EYA4	2070	genome.wustl.edu	37	6	133834159	133834159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004100.4	+1	reviewed	p.Y495C	1.000	114	0%	114	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase
MYB	4602	genome.wustl.edu	37	6	135509017	135509017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130173.1	+1	reviewed	p.W63R	1.000	84	0%	96	32.3%	1	0%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
TXLNB	167838	genome.wustl.edu	37	6	139609899	139609899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153235.3	-1	validated	p.E46D	0.000	219	0%	204	34.8%	0	-	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143092118	143092118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.S1253L	0.685	96	0%	148	16.2%	0	-	benign(0.01)	tolerated(0.15)	neutral(0.241)	NULL
PEX3	8504	genome.wustl.edu	37	6	143810357	143810357	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003630.2	+1	reviewed	p.E372	1.000	142	0%	149	28.2%	23	39.1%	-	-	-	NULL
LTV1	84946	genome.wustl.edu	37	6	144184235	144184235	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032860.3	+1	provisional	p.R377*	0.986	219	0%	258	29.1%	43	11.6%	-	-	-	HMMPfam_LTV
PLAGL1	5325	genome.wustl.edu	37	6	144262742	144262742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080951.1	-1	reviewed	p.A404V	0.003	74	0%	93	34.4%	4	75%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
UTRN	7402	genome.wustl.edu	37	6	144898291	144898291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007124.2	+1	reviewed	p.R2449H	0.548	143	0%	73	34.2%	1	0%	benign(0.051)	tolerated(0.66)	neutral(0.005)	HMMSmart_SPEC
GRM1	2911	genome.wustl.edu	37	6	146350666	146350666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000838.3	+1	reviewed	p.L5I	0.994	147	0%	150	31.3%	0	-	benign(0.006)	tolerated(0.7)	neutral(0.002)	NULL
GRM1	2911	genome.wustl.edu	37	6	146625858	146625858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000838.3	+1	reviewed	p.F354L	1.000	104	0%	71	22.5%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_ANF_receptor,superfamily_SSF53822
SASH1	23328	genome.wustl.edu	37	6	148865925	148865925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015278.3	+1	validated	p.D1107N	1.000	9	0.000	16	0.375	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ZC3H12D	340152	genome.wustl.edu	37	6	149795380	149795380	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207360.2	-1	validated	p.A100	0.066	14	0%	33	48.5%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152510441	152510441	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.I7749	1.000	166	0%	167	34.7%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152529286	152529286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.R7549C	1.000	199	0%	188	33.5%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152688316	152688316	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454018	-1	known	p.E454*	0.004	95	0%	117	31.6%	0	-	-	-	-	NULL
IGF2R	3482	genome.wustl.edu	37	6	160454141	160454141	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	e9+2	0.987	79	0%	118	35.6%	1	100%	-	-	-	-
WDR27	253769	genome.wustl.edu	37	6	170060807	170060807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182552.3	-1	validated	p.V361I	0.000	26	0%	46	28.3%	8	25%	benign(0.001)	tolerated(1)	-	NULL
PAPOLB	56903	genome.wustl.edu	37	7	4899890	4899890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020144.4	-1	validated	p.D518Y	0.490	193	0%	261	24.9%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
RSPH10B2	728194	genome.wustl.edu	37	7	6797468	6797468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099697.1	+1	provisional	p.E54K	0.001	112	0%	237	27.8%	0	-	benign(0.156)	tolerated(0.41)	neutral(0.029)	NULL
LOC100131257	100131257	genome.wustl.edu	37	7	7118420	7118420	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716696.1	-1	model	p.E262*	1.000	170	0%	185	29.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NXPH1	30010	genome.wustl.edu	37	7	8791118	8791118	+	Missense_Mutation	SNP	G	G	A	rs145299363	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152745.2	+1	reviewed	p.A179T	1.000	92	0%	69	15.9%	0	-	benign(0.011)	tolerated(0.59)	neutral(0.005)	HMMPfam_Neurexophilin
ISPD	729920	genome.wustl.edu	37	7	16131416	16131416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101426.3	-1	validated	p.Q420H	0.963	13	0%	14	28.6%	1	0%	possibly_damaging(0.848)	deleterious(0.01)	deleterious(0.731)	NULL
TWISTNB	221830	genome.wustl.edu	37	7	19748423	19748423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002926.1	-1	validated	p.E73*	0.992	89	0%	86	31.4%	1	0%	-	-	-	HMMPfam_RNA_pol_Rpb7_N
ABCB5	340273	genome.wustl.edu	37	7	20685493	20685493	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000404938	+1	known	p.E265*	1.000	278	0%	244	32.8%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB5	340273	genome.wustl.edu	37	7	20691167	20691167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178559.5	+1	validated	p.R41Q	1.000	213	0%	184	31.5%	0	-	benign(0.241)	tolerated(0.06)	neutral(0.347)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21695579	21695579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.E1697K	0.000	77	0%	50	28%	0	-	benign(0.004)	tolerated(0.91)	-	HMMPfam_DHC_N2
CDCA7L	55536	genome.wustl.edu	37	7	21947891	21947891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018719.4	-1	validated	p.L180I	0.000	55	0%	67	26.9%	13	53.8%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
STK31	56164	genome.wustl.edu	37	7	23802486	23802486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.D454Y	0.998	241	0%	246	33.3%	0	-	benign(0.313)	deleterious(0.02)	deleterious(0.481)	NULL
DFNA5	1687	genome.wustl.edu	37	7	24789230	24789230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127453.1	-1	reviewed	p.S55F	0.799	188	0%	221	29.4%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Gasdermin
OSBPL3	26031	genome.wustl.edu	37	7	24880316	24880316	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015550.2	-1	reviewed	p.Q496	1.000	40	0%	49	36.7%	2	100%	-	-	-	HMMPfam_Oxysterol_BP
OSBPL3	26031	genome.wustl.edu	37	7	24911363	24911363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015550.2	-1	reviewed	p.D89N	1.000	116	0%	120	31.7%	4	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
HOXA7	3204	genome.wustl.edu	37	7	27194671	27194671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006896.3	-1	reviewed	p.K184E	1.000	35	0%	101	31.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
ADCYAP1R1	117	genome.wustl.edu	37	7	31124988	31124988	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001118.3	+1	reviewed	p.A200	0.953	108	0%	190	28.9%	3	33.3%	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
NT5C3	51251	genome.wustl.edu	37	7	33059274	33059274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002010.1	-1	reviewed	p.I173S	1.000	115	0%	131	38.9%	19	36.8%	benign(0.405)	deleterious(0.01)	deleterious(0.536)	HMMPfam_UMPH-1,superfamily_HAD-like
BBS9	27241	genome.wustl.edu	37	7	33192343	33192343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198428.2	+1	reviewed	p.Y48C	1.000	122	0%	125	35.2%	0	-	benign(0.332)	deleterious(0.02)	deleterious(0.487)	NULL
BMPER	168667	genome.wustl.edu	37	7	34118739	34118739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133468.3	+1	validated	p.R450H	0.793	83	0%	80	31.2%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_VWD,HMMSmart_VWD
ANLN	54443	genome.wustl.edu	37	7	36464171	36464171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018685.2	+1	validated	p.D874G	1.000	108	0%	82	26.8%	11	54.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
AMPH	273	genome.wustl.edu	37	7	38500961	38500961	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441628	-1	known	p.G64*	1.000	294	0%	252	30.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AMPH	273	genome.wustl.edu	37	7	38574563	38574563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001635.2	-1	reviewed	p.E40K	1.000	73	0%	74	17.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAR,HMMSmart_SM00721
GLI3	2737	genome.wustl.edu	37	7	42018306	42018306	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.F513	0.985	52	0%	64	31.2%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355
C7orf25	79020	genome.wustl.edu	37	7	42949404	42949404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099858.1	-1	validated	p.D424Y	1.000	108	0%	115	29.6%	30	40%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DUF1308
ADCY1	107	genome.wustl.edu	37	7	45662327	45662327	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021116.2	+1	reviewed	p.F335	0.998	23	0%	29	27.6%	0	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
IGFBP1	3484	genome.wustl.edu	37	7	45930309	45930309	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000596.2	+1	reviewed	p.K171I	0.000	48	0%	97	10.3%	1	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	superfamily_Thyroglobulin type-1 domain
HUS1	3364	genome.wustl.edu	37	7	48016010	48016010	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433977	-1	known	p.I137	0.000	11	0.000	9	0.556	0	-	-	-	-	HMMPfam_Hus1
C7orf57	136288	genome.wustl.edu	37	7	48083164	48083164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100159.1	+1	validated	p.P110T	0.995	63	0%	77	29.9%	1	0%	probably_damaging(0.977)	tolerated(0.08)	deleterious(0.719)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48315177	48315177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.N1972H	0.001	127	0%	88	39.8%	1	0%	probably_damaging(0.99)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48390345	48390345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.Q3437R	0.998	93	0%	90	37.8%	0	-	benign(0.04)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48550725	48550725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.A4524T	0.960	69	0%	81	22.2%	0	-	probably_damaging(0.979)	-	-	NULL
FIGNL1	63979	genome.wustl.edu	37	7	50513485	50513485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042762.1	-1	validated	p.E501K	1.000	213	0%	215	30.7%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SEC61G	23480	genome.wustl.edu	37	7	54825211	54825211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012456.1	-1	reviewed	p.R24K	1.000	75	0%	128	31.2%	674	46.8%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_SecE,PatternScan_SECE_SEC61G,superfamily_Preprotein translocase SecE subunit
ZNF479	90827	genome.wustl.edu	37	7	57188340	57188340	+	Missense_Mutation	SNP	C	C	A	rs186421110	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033273.1	-1	provisional	p.R261I	0.982	188	0%	206	28.2%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF716	441234	genome.wustl.edu	37	7	57528659	57528659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342727.1	+1	model	p.K164N	0.926	138	0%	152	30.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_C2H2 and C2HC zinc fingers
ERV3-1	2086	genome.wustl.edu	37	7	64453167	64453167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007253.3	-1	reviewed	p.V80L	0.874	113	0%	159	17.6%	1	100%	possibly_damaging(0.574)	deleterious(0)	deleterious(0.641)	NULL
KCTD7	154881	genome.wustl.edu	37	7	66098334	66098334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153033.3	+1	validated	p.E73K	1.000	38	0%	93	37.6%	1	100%	possibly_damaging(0.546)	tolerated(0.2)	neutral(0.234)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
AUTS2	26053	genome.wustl.edu	37	7	69599557	69599557	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015570.2	+1	validated	p.F220	1.000	227	0%	262	37%	3	66.6%	-	-	-	NULL
CCDC146	57639	genome.wustl.edu	37	7	76908304	76908304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020879.2	+1	validated	p.K527T	1.000	101	0%	102	28.4%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GNAI1	2770	genome.wustl.edu	37	7	79840331	79840331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002069.5	+1	validated	p.H213N	1.000	143	0%	116	31%	2	0%	possibly_damaging(0.834)	deleterious(0)	deleterious(0.762)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
GNAT3	346562	genome.wustl.edu	37	7	80117878	80117878	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102386.1	-1	provisional	p.G92	0.973	43	0%	31	22.6%	0	-	-	-	-	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNA2D1	781	genome.wustl.edu	37	7	81799875	81799875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.E115D	0.836	359	0%	279	25.4%	0	-	benign(0)	tolerated(0.89)	-	HMMPfam_VWA_N
PCLO	27445	genome.wustl.edu	37	7	82580373	82580373	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.T3177	0.221	101	0%	106	21.7%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82584826	82584826	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.R1815*	0.895	620	0%	631	30.9%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82584919	82584919	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.E1784*	1.000	555	0%	493	29.4%	0	-	-	-	-	NULL
ABCB1	5243	genome.wustl.edu	37	7	87160739	87160739	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.I852	0.998	386	0%	342	33.3%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ZNF804B	219578	genome.wustl.edu	37	7	88847582	88847582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.I74M	1.000	171	0%	177	19.2%	0	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
ZNF804B	219578	genome.wustl.edu	37	7	88963897	88963897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.P534L	0.842	262	0%	183	30.1%	0	-	benign(0)	tolerated(1)	-	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88964771	88964771	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.I825	0.000	312	0%	233	30.5%	0	-	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92733273	92733273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.R713I	0.004	459	0%	412	31.8%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
HEPACAM2	253012	genome.wustl.edu	37	7	92848735	92848735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039372.1	-1	provisional	p.P37S	1.000	202	0%	157	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-set,superfamily_Immunoglobulin
BET1	10282	genome.wustl.edu	37	7	93625485	93625485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425626	-1	known	p.S98L	0.000	81	0%	82	42.7%	1	0%	unknown(0)	-	-	NULL
SGCE	8910	genome.wustl.edu	37	7	94232653	94232653	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428696	-1	known	p.V246A	1.000	93	0%	69	24.6%	5	20%	-	-	-	HMMPfam_Sarcoglycan_2
CYP3A5	1577	genome.wustl.edu	37	7	99247699	99247699	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000777.2	-1	reviewed	p.T470	0.661	370	0%	433	12.9%	2	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP3A5	1577	genome.wustl.edu	37	7	99277480	99277480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000777.2	-1	reviewed	p.L14I	0.435	90	0%	93	32.3%	1	0%	possibly_damaging(0.681)	deleterious(0.01)	deleterious(0.649)	NULL
CYP3A7	1551	genome.wustl.edu	37	7	99293367	99293367	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000292414	-1	known	p.*534R	0.527	54	0%	52	30.8%	0	-	-	-	-	NULL
ZCWPW1	55063	genome.wustl.edu	37	7	100017499	100017499	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017984.3	-1	validated	p.G12	0.838	62	1.6%	88	30.7%	0	-	-	-	-	NULL
ACHE	43	genome.wustl.edu	37	7	100491567	100491567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015831.2	-1	reviewed	p.F96S	1.000	11	0%	21	38.1%	0	-	probably_damaging(0.967)	tolerated(0.29)	neutral(0.438)	HMMPfam_COesterase,superfamily_SSF53474
MUC3A	4584	genome.wustl.edu	37	7	100550885	100550885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725354.2	+1	model	p.S489Y	0.001	399	0%	444	14.2%	1	0%	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100685023	100685023	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.I3442	0.001	243	0.4%	363	34.2%	0	-	-	-	-	NULL
MOGAT3	346606	genome.wustl.edu	37	7	100842054	100842054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178176.2	-1	provisional	p.H116N	0.991	8	0.000	37	0.378	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGAT
CUX1	1523	genome.wustl.edu	37	7	101870948	101870948	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.L1144	0.625	17	0%	34	41.2%	6	33.3%	-	-	-	HMMPfam_CUT
SLC26A5	375611	genome.wustl.edu	37	7	103050861	103050861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198999.2	-1	reviewed	p.R236W	1.000	142	0%	150	23.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sulfate_transp
RELN	5649	genome.wustl.edu	37	7	103205756	103205756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.R1727W	1.000	119	0.8%	119	26.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR22	2845	genome.wustl.edu	37	7	107114563	107114563	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005295.2	+1	reviewed	p.R20*	0.986	201	0%	135	31.9%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
NRCAM	4897	genome.wustl.edu	37	7	107816942	107816942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037132.1	-1	reviewed	p.F1028L	0.912	162	0.6%	184	32.6%	0	-	benign(0)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NRCAM	4897	genome.wustl.edu	37	7	107825047	107825047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037132.1	-1	reviewed	p.E683K	1.000	34	0%	54	37%	1	100%	possibly_damaging(0.439)	deleterious(0.01)	deleterious(0.548)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NRCAM	4897	genome.wustl.edu	37	7	107875081	107875081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037132.1	-1	reviewed	p.D59G	1.000	167	0%	142	33.8%	1	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DOCK4	9732	genome.wustl.edu	37	7	111517132	111517132	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445943	-1	known	p.P554H	0.953	32	0%	37	40.5%	0	-	-	-	-	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113518832	113518832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002711.3	-1	reviewed	p.A772V	1.000	497	0.2%	413	25.7%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ASZ1	136991	genome.wustl.edu	37	7	117066957	117066957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130768.2	-1	validated	p.K46N	1.000	220	0%	278	29.1%	0	-	benign(0.065)	tolerated(0.13)	neutral(0.257)	HMMSmart_ANK,superfamily_ANK
PTPRZ1	5803	genome.wustl.edu	37	7	121653537	121653537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.E1479D	0.009	134	0%	165	26.7%	0	-	benign(0.287)	deleterious(0)	deleterious(0.533)	NULL
AASS	10157	genome.wustl.edu	37	7	121741694	121741694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005763.3	-1	reviewed	p.F440C	1.000	141	0%	114	28.9%	0	-	benign(0.008)	tolerated(0.15)	neutral(0.241)	NULL
SPAM1	6677	genome.wustl.edu	37	7	123594387	123594387	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003117.4	+1	reviewed	p.E255*	0.836	295	0%	210	30%	0	-	-	-	-	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
GPR37	2861	genome.wustl.edu	37	7	124387310	124387310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005302.2	-1	provisional	p.E371K	1.000	106	0%	83	34.9%	1	0%	benign(0.144)	tolerated(0.28)	neutral(0.044)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GCC1	79571	genome.wustl.edu	37	7	127224376	127224376	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024523.5	-1	reviewed	p.G287	0.989	39	0%	38	28.9%	4	75%	-	-	-	NULL
CCDC136	64753	genome.wustl.edu	37	7	128441311	128441311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022742.3	+1	validated	p.E140*	0.979	18	0%	44	47.7%	0	-	-	-	-	NULL
CPA1	1357	genome.wustl.edu	37	7	130027730	130027730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001868.2	+1	reviewed	p.E380K	1.000	270	0%	414	33.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
CNOT4	4850	genome.wustl.edu	37	7	135098328	135098328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013316.2	-1	validated	p.F199S	1.000	139	0%	116	31%	2	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF54928
DENND2A	27147	genome.wustl.edu	37	7	140221700	140221700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015689.3	-1	validated	p.R956W	1.000	19	0%	42	23.8%	27	22.2%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_dDENN,HMMSmart_SM00801
MGAM	8972	genome.wustl.edu	37	7	141708471	141708471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.R98Q	0.982	147	0%	148	25%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Trefoil
TRBV10-2	28584	genome.wustl.edu	37	7	142206758	142206758	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426318	-1	known	p.E33*	0.000	189	0%	202	30.2%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBV19	28568	genome.wustl.edu	37	7	142326586	142326586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390393	+1	known	p.L6F	0.000	191	0%	194	39.7%	0	-	benign(0.016)	tolerated(0.12)	neutral(0.261)	NULL
TRPV5	56302	genome.wustl.edu	37	7	142612682	142612682	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019841.4	-1	reviewed	p.I393	0.001	97	0%	117	33.3%	0	-	-	-	-	NULL
TAS2R41	259287	genome.wustl.edu	37	7	143175456	143175456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176883.2	+1	provisional	p.F164C	0.000	124	0%	138	29%	0	-	probably_damaging(0.984)	tolerated(0.05)	deleterious(0.776)	HMMPfam_TAS2R,superfamily_SSF81321
OR2F2	135948	genome.wustl.edu	37	7	143632829	143632829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004685.1	+1	provisional	p.M168I	0.002	249	0%	185	32.4%	0	-	benign(0.016)	tolerated(0.09)	neutral(0.297)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A12	346525	genome.wustl.edu	37	7	143792936	143792936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004135.1	+1	provisional	p.V246M	0.637	478	0%	412	35.4%	0	-	benign(0.208)	deleterious(0.01)	neutral(0.426)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CNTNAP2	26047	genome.wustl.edu	37	7	147815297	147815297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.S824Y	1.000	94	0%	125	19.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
C7orf33	202865	genome.wustl.edu	37	7	148311228	148311228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145304.2	+1	predicted	p.S100Y	0.128	128	0%	168	31.5%	0	-	benign(0.347)	-	-	NULL
LOC100288724	100288724	genome.wustl.edu	37	7	150311737	150311737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342806.1	-1	model	p.A42V	1.000	87	0%	109	15.6%	0	-	-	-	-	HMMPfam_Ion_trans
MLL3	58508	genome.wustl.edu	37	7	151842291	151842291	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.G4707	0.999	148	0%	187	33.7%	8	12.5%	-	-	-	NULL
XRCC2	7516	genome.wustl.edu	37	7	152346093	152346093	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005431.1	-1	reviewed	p.R159	0.000	156	0%	221	36.2%	2	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
XRCC2	7516	genome.wustl.edu	37	7	152346221	152346221	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005431.1	-1	reviewed	p.L117V	0.009	125	0%	161	32.9%	1	100%	benign(0.007)	tolerated(0.97)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
HTR5A	3361	genome.wustl.edu	37	7	154863006	154863006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024012.2	+1	reviewed	p.T133A	1.000	13	0%	19	47.4%	0	-	benign(0.1)	tolerated(0.3)	neutral(0.036)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
VIPR2	7434	genome.wustl.edu	37	7	158827282	158827282	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003382.4	-1	validated	p.I290S	0.084	10	0%	24	29.2%	0	-	benign(0.078)	tolerated(0.1)	neutral(0.292)	HMMPfam_7tm_2,superfamily_SSF81321
DLGAP2	9228	genome.wustl.edu	37	8	1616573	1616573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004745.3	+1	reviewed	p.T550M	1.000	11	0%	13	61.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1624774	1624774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004745.3	+1	reviewed	p.D680N	1.000	7	0.000	13	0.308	0	-	benign(0.012)	deleterious(0)	neutral(0.445)	HMMPfam_GKAP
MYOM2	9172	genome.wustl.edu	37	8	2021562	2021562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.A368T	1.000	11	0%	20	40%	0	-	possibly_damaging(0.8)	tolerated(0.21)	neutral(0.345)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
CSMD1	64478	genome.wustl.edu	37	8	2800041	2800041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.F3497L	1.000	21	0%	20	20%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PRSS55	203074	genome.wustl.edu	37	8	10388874	10388874	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198464.2	+1	validated	p.V139	0.002	67	0%	150	32%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MSR1	4481	genome.wustl.edu	37	8	16012621	16012621	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138715.2	-1	reviewed	p.R284*	0.982	71	0%	73	49.3%	0	-	-	-	-	HMMPfam_Collagen
VPS37A	137492	genome.wustl.edu	37	8	17123485	17123485	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152415.2	+1	validated	p.I65M	1.000	109	0%	105	30.5%	8	62.5%	possibly_damaging(0.826)	deleterious(0.01)	deleterious(0.719)	superfamily_UBC-like
PDGFRL	5157	genome.wustl.edu	37	8	17486038	17486038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006207.1	+1	reviewed	p.V183A	1.000	200	0%	243	25.5%	5	60%	possibly_damaging(0.596)	deleterious(0.01)	deleterious(0.612)	superfamily_Immunoglobulin
MTUS1	57509	genome.wustl.edu	37	8	17541987	17541987	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001924.2	-1	reviewed	p.A896	0.001	316	0%	369	16.5%	6	33.3%	-	-	-	NULL
KIAA1967	57805	genome.wustl.edu	37	8	22464808	22464808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.H153Y	1.000	27	0%	31	29%	25	52%	benign(0.202)	tolerated(0.2)	neutral(0.069)	NULL
ADRA1A	148	genome.wustl.edu	37	8	26627684	26627684	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000680.2	-1	reviewed	p.E461	1.000	352	0%	435	29.4%	0	-	-	-	-	NULL
CLU	1191	genome.wustl.edu	37	8	27468106	27468106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001831.2	-1	reviewed	p.D47Y	0.298	32	0%	66	18.2%	64	40.6%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
EXTL3	2137	genome.wustl.edu	37	8	28574253	28574253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001440.2	+1	provisional	p.V226A	0.028	94	0%	134	35.1%	4	75%	benign(0.427)	tolerated(0.46)	neutral(0.151)	HMMPfam_Exostosin
GTF2E2	2961	genome.wustl.edu	37	8	30469818	30469818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002095.4	-1	validated	p.K183E	1.000	134	0%	176	35.2%	51	47%	benign(0.261)	tolerated(0.11)	neutral(0.299)	NULL
KCNU1	157855	genome.wustl.edu	37	8	36766981	36766981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031836.2	+1	validated	p.F753L	0.966	463	0%	367	33%	0	-	benign(0.034)	tolerated(0.31)	neutral(0.029)	NULL
GINS4	84296	genome.wustl.edu	37	8	41397256	41397256	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032336.2	+1	validated	p.P119	0.992	76	0%	132	34.1%	11	54.5%	-	-	-	HMMPfam_Sld5
AP3M2	10947	genome.wustl.edu	37	8	42015547	42015547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134296.1	+1	reviewed	p.F121S	1.000	88	0%	130	33.1%	1	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
ENSG00000215179	0	genome.wustl.edu	37	8	47885713	47885713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399732	-1	known	p.N174D	1.000	87	0%	120	42.5%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRKDC	5591	genome.wustl.edu	37	8	48762032	48762032	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081640.1	-1	validated	p.R2346Q	0.000	169	0%	205	35.1%	1	0%	-	-	-	NULL
SNAI2	6591	genome.wustl.edu	37	8	49832690	49832690	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003068.3	-1	reviewed	p.C130	1.000	113	0.9%	128	30.5%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PXDNL	137902	genome.wustl.edu	37	8	52320932	52320932	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.A1084	0.981	36	0%	46	30.4%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
ST18	9705	genome.wustl.edu	37	8	53126781	53126781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014682.2	-1	validated	p.R13C	0.608	140	0%	111	36%	0	-	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	NULL
RP1	6101	genome.wustl.edu	37	8	55541146	55541146	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.E1568	0.850	151	0%	159	37.1%	0	-	-	-	-	NULL
C8orf45	157777	genome.wustl.edu	37	8	67796203	67796203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173518.4	+1	validated	p.I349M	1.000	123	0%	167	30.5%	0	-	benign(0.056)	deleterious(0.02)	neutral(0.387)	HMMSmart_SM00350
SULF1	23213	genome.wustl.edu	37	8	70515855	70515855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.A404V	1.000	111	0%	116	40.5%	5	20%	benign(0.001)	tolerated(0.64)	neutral(0.003)	superfamily_Alkaline_phosphatase_core
SULF1	23213	genome.wustl.edu	37	8	70550843	70550843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.F797L	0.977	139	0%	140	30%	14	0%	possibly_damaging(0.797)	tolerated(0.12)	deleterious(0.560)	superfamily_Alkaline_phosphatase_core
TRAM1	23471	genome.wustl.edu	37	8	71512312	71512312	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014294.5	-1	reviewed	p.T43	0.999	71	0%	70	35.7%	39	48.7%	-	-	-	NULL
TRPA1	8989	genome.wustl.edu	37	8	72948540	72948540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007332.2	-1	reviewed	p.F846L	0.850	143	0%	128	16.4%	0	-	benign(0.093)	tolerated(1)	neutral(0.007)	HMMPfam_Ion_trans
LOC392232	392232	genome.wustl.edu	37	8	73122081	73122081	+	RNA	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_037363.2	-1	model	NULL	0.863	139	0%	127	30.7%	0	-	-	-	-	-
ZFHX4	79776	genome.wustl.edu	37	8	77616819	77616819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.F166L	1.000	180	0%	198	34.8%	0	-	benign(0.016)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77767552	77767552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.D2754N	1.000	100	0%	92	22.8%	0	-	possibly_damaging(0.887)	-	-	NULL
DCAF4L2	138009	genome.wustl.edu	37	8	88885963	88885963	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152418.3	-1	validated	p.A79	0.982	126	0%	145	34.5%	0	-	-	-	-	superfamily_WD40_like
NECAB1	64168	genome.wustl.edu	37	8	91837010	91837010	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022351.4	+1	validated	p.E64*	1.000	9	0.000	8	0.500	0	-	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
C8orf38	137682	genome.wustl.edu	37	8	96047721	96047721	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152416.2	+1	reviewed	p.R113*	1.000	114	0%	127	35.4%	9	11.1%	-	-	-	HMMPfam_SQS_PSY,superfamily_Terpenoid synthases
VPS13B	157680	genome.wustl.edu	37	8	100168838	100168838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.R692Q	1.000	212	0%	227	30.8%	0	-	benign(0.001)	tolerated(0.88)	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100654319	100654319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.S1859L	0.002	243	0%	173	31.8%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
RIMS2	9699	genome.wustl.edu	37	8	104928761	104928761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.I678V	1.000	98	0%	85	37.6%	0	-	benign(0.253)	tolerated(0.09)	neutral(0.323)	HMMSmart_SM00228,superfamily_PDZ domain-like
RIMS2	9699	genome.wustl.edu	37	8	105263357	105263357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.S1266Y	1.000	100	0%	112	24.1%	0	-	benign(0.323)	tolerated(0.32)	neutral(0.125)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
LRP12	29967	genome.wustl.edu	37	8	105509746	105509746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013437.4	-1	reviewed	p.S345Y	1.000	125	0%	149	37.6%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ABRA	137735	genome.wustl.edu	37	8	107781936	107781936	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139166.4	-1	validated	p.R161	0.997	196	0%	212	30.2%	0	-	-	-	-	NULL
ANGPT1	284	genome.wustl.edu	37	8	108348480	108348480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001146.3	-1	reviewed	p.R158Q	1.000	95	0%	107	43%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
TMEM74	157753	genome.wustl.edu	37	8	109797216	109797216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153015.1	-1	provisional	p.A38T	0.998	102	0%	94	37.2%	2	100%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113326673	113326673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.L2512I	1.000	207	0%	144	29.9%	0	-	probably_damaging(0.987)	tolerated(0.2)	deleterious(0.485)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113529263	113529263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.A1586S	1.000	236	0%	156	19.2%	0	-	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain
SLC30A8	169026	genome.wustl.edu	37	8	118183386	118183386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173851.2	+1	reviewed	p.L315I	1.000	192	0%	139	36%	0	-	probably_damaging(0.966)	tolerated(0.07)	deleterious(0.727)	HMMPfam_Cation_efflux
TAF2	6873	genome.wustl.edu	37	8	120768345	120768345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003184.3	-1	reviewed	p.L927I	1.000	128	0%	103	25.2%	11	54.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
WDR67	93594	genome.wustl.edu	37	8	124121587	124121587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145647.3	+1	validated	p.R414C	1.000	168	0%	150	33.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATAD2	29028	genome.wustl.edu	37	8	124383979	124383979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.R156Q	1.000	77	0%	83	33.7%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FER1L6	654463	genome.wustl.edu	37	8	124998335	124998335	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039112.2	+1	validated	p.L480V	0.997	160	0%	218	38.1%	0	-	benign(0.003)	tolerated(0.15)	neutral(0.241)	NULL
TRIB1	10221	genome.wustl.edu	37	8	126445587	126445587	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025195.2	+1	validated	p.K130T	1.000	94	0%	232	28.4%	6	50%	benign(0.007)	tolerated(0.42)	neutral(0.014)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRIB1	10221	genome.wustl.edu	37	8	126448487	126448487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025195.2	+1	validated	p.R298H	0.999	84	0%	135	21.5%	10	10%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ADCY8	114	genome.wustl.edu	37	8	131795963	131795963	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115.2	-1	reviewed	p.S1081*	1.000	66	0%	64	29.7%	0	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
LRRC6	23639	genome.wustl.edu	37	8	133645194	133645194	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012472.3	-1	provisional	p.E149*	1.000	194	0%	177	33.9%	3	0%	-	-	-	superfamily_Outer arm dynein light chain 1
TG	7038	genome.wustl.edu	37	8	133953739	133953739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.D1729N	1.000	139	0%	301	20.9%	0	-	possibly_damaging(0.836)	deleterious(0.01)	deleterious(0.725)	NULL
ZNF250	58500	genome.wustl.edu	37	8	146108178	146108178	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021061.3	-1	validated	p.P135	0.163	87	0%	172	33.7%	1	0%	-	-	-	NULL
ZNF252	286101	genome.wustl.edu	37	8	146202799	146202799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355436	-1	known	p.R371Q	0.000	43	0%	44	40.9%	2	50%	benign(0.362)	deleterious(0.02)	deleterious(0.498)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RFX3	5991	genome.wustl.edu	37	9	3247980	3247980	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002919.2	-1	reviewed	p.E674*	0.025	224	0%	199	35.7%	0	-	-	-	-	NULL
KIAA1432	57589	genome.wustl.edu	37	9	5720745	5720745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020829.2	+1	validated	p.A160T	1.000	501	0%	521	16.1%	2	0%	benign(0.002)	tolerated(0.65)	neutral(0.003)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6012762	6012762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012416.2	-1	validated	p.R949H	1.000	91	0%	100	23%	10	80%	probably_damaging(0.985)	tolerated(0.07)	deleterious(0.751)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6013866	6013866	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012416.2	-1	validated	p.F581C	1.000	147	0%	212	35.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
MPDZ	8777	genome.wustl.edu	37	9	13168518	13168518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003829.3	-1	validated	p.R1034Q	1.000	512	0%	497	30.8%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
FREM1	158326	genome.wustl.edu	37	9	14784483	14784483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144966.5	-1	reviewed	p.E1443K	0.997	69	0%	72	29.2%	2	0%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	NULL
FREM1	158326	genome.wustl.edu	37	9	14819281	14819281	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144966.5	-1	reviewed	p.N833H	0.020	97	0%	105	32.4%	0	-	benign(0.007)	tolerated(0.14)	neutral(0.249)	NULL
SNAPC3	6619	genome.wustl.edu	37	9	15447168	15447168	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039697.1	+1	validated	p.R220*	1.000	502	0%	518	32.8%	16	6.2%	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15744567	15744567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173550.2	+1	predicted	p.K782N	0.997	379	0%	328	34.5%	1	0%	possibly_damaging(0.605)	tolerated(0.1)	deleterious(0.496)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20948333	20948333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017794.3	+1	validated	p.K1247Q	1.000	163	0%	160	10.6%	8	0%	probably_damaging(0.971)	tolerated(0.18)	deleterious(0.469)	superfamily_ARM-type_fold
IFNA14	3448	genome.wustl.edu	37	9	21239397	21239397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002172.2	-1	validated	p.N180H	0.003	626	0%	632	29.1%	0	-	benign(0.01)	tolerated(0.09)	neutral(0.297)	HMMPfam_Interferon,superfamily_4_helix_cytokine
CDKN2A	1029	genome.wustl.edu	37	9	21970980	21970980	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000077.3	-1	reviewed	p.V126	0.013	24	0%	31	35.5%	7	42.8%	-	-	-	superfamily_Ankyrin repeat
C9orf82	79886	genome.wustl.edu	37	9	26886162	26886162	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024828.3	-1	validated	p.K177Q	1.000	52	0%	28	28.6%	2	0%	possibly_damaging(0.795)	tolerated(0.29)	neutral(0.328)	NULL
C9orf82	79886	genome.wustl.edu	37	9	26887478	26887478	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024828.3	-1	validated	p.E113*	1.000	35	0%	60	25%	2	0%	-	-	-	NULL
PLAA	9373	genome.wustl.edu	37	9	26905614	26905614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031689.2	-1	validated	p.Q761H	0.982	114	0%	116	26.7%	46	50%	benign(0.234)	tolerated(0.08)	neutral(0.324)	HMMPfam_PUL,superfamily_ARM-type_fold
IFNK	56832	genome.wustl.edu	37	9	27524857	27524857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020124.2	+1	reviewed	p.E175*	0.992	149	0%	165	29.7%	0	-	-	-	-	HMMPfam_Interferon,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D,superfamily_4-helical cytokines
LINGO2	158038	genome.wustl.edu	37	9	27950498	27950498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152570.1	-1	provisional	p.E58K	1.000	272	0.4%	212	31.1%	0	-	possibly_damaging(0.883)	deleterious(0.04)	deleterious(0.694)	HMMSmart_LRRNT,superfamily_SSF52058
TAF1L	138474	genome.wustl.edu	37	9	32631331	32631331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.R1416K	1.000	431	0%	516	33.5%	0	-	possibly_damaging(0.936)	tolerated(0.29)	neutral(0.411)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain
ARID3C	138715	genome.wustl.edu	37	9	34622032	34622032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017363.1	-1	reviewed	p.G375W	1.000	47	0%	94	35.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1045	23349	genome.wustl.edu	37	9	34971317	34971317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015297.1	+1	validated	p.R8W	1.000	66	0%	85	35.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FANCG	2189	genome.wustl.edu	37	9	35077266	35077266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004629.1	-1	reviewed	p.R214H	0.994	95	0%	152	31.6%	17	29.4%	benign(0.274)	tolerated(0.09)	neutral(0.326)	superfamily_TPR-like
RGP1	9827	genome.wustl.edu	37	9	35752005	35752005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080496.1	+1	provisional	p.R312Q	0.995	22	0%	65	43.1%	7	71.4%	probably_damaging(0.968)	tolerated(0.61)	neutral(0.414)	HMMPfam_Rgp1
CNTNAP3	79937	genome.wustl.edu	37	9	39171504	39171504	+	Nonsense_Mutation	SNP	G	G	A	rs1693027	byCluster	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033655.3	-1	reviewed	p.R399*	1.000	150	0%	123	22.8%	1	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
FAM74A3	728495	genome.wustl.edu	37	9	40715655	40715655	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026801.1	+1	predicted	NULL	0.422	19	0%	19	31.6%	0	-	-	-	-	-
FAM75A6	389730	genome.wustl.edu	37	9	43627781	43627781	+	Silent	SNP	A	A	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145196.1	-1	predicted	p.L302	0.001	149	0%	303	19.1%	0	-	-	-	-	NULL
LOC100288765	100288765	genome.wustl.edu	37	9	69830400	69830400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342925.1	+1	model	p.R9I	0.241	123	0%	194	10.3%	0	-	-	-	-	NULL
APBA1	320	genome.wustl.edu	37	9	72082853	72082853	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001163.3	-1	reviewed	p.I456	1.000	110	0%	173	16.8%	0	-	-	-	-	HMMSmart_PTB,superfamily_SSF50729
TMEM2	23670	genome.wustl.edu	37	9	74340530	74340530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013390.2	-1	validated	p.I715M	0.998	210	0%	246	28.9%	0	-	benign(0.006)	tolerated(0.1)	neutral(0.286)	superfamily_Pectin lyase-like
GCNT1	2650	genome.wustl.edu	37	9	79117571	79117571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097633.1	+1	reviewed	p.D92N	0.958	177	0%	144	23.6%	6	50%	possibly_damaging(0.466)	tolerated(0.33)	neutral(0.177)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79896809	79896809	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.K977N	0.389	79	0%	75	33.3%	1	100%	benign(0.01)	tolerated(0.53)	neutral(0.008)	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84608839	84608839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001670.2	+1	validated	p.A1152S	0.001	120	0%	154	12.3%	0	-	benign(0.008)	tolerated(0.59)	neutral(0.004)	NULL
RASEF	158158	genome.wustl.edu	37	9	85613321	85613321	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152573.2	-1	provisional	p.E588	0.494	277	0%	331	30.2%	1	0%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF27	55582	genome.wustl.edu	37	9	86482758	86482758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017576.1	-1	provisional	p.K925N	1.000	71	0%	92	29.3%	4	50%	possibly_damaging(0.739)	deleterious(0)	deleterious(0.715)	NULL
KIF27	55582	genome.wustl.edu	37	9	86502079	86502079	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017576.1	-1	provisional	p.E706*	0.604	70	0%	69	15.9%	1	0%	-	-	-	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90536920	90536920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.E700K	0.014	121	0%	292	14.4%	0	-	-	-	-	NULL
ZNF782	158431	genome.wustl.edu	37	9	99581129	99581129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001662.1	-1	provisional	p.K392N	1.000	465	0%	514	32.1%	2	50%	benign(0.284)	deleterious(0)	deleterious(0.531)	superfamily_C2H2 and C2HC zinc fingers
ZNF322P1	387328	genome.wustl.edu	37	9	99961776	99961776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199005.1	-1	validated	p.E6D	0.971	464	0%	493	17.8%	0	-	probably_damaging(0.983)	tolerated(0.36)	neutral(0.449)	NULL
TSTD2	158427	genome.wustl.edu	37	9	100368496	100368496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139246.4	-1	validated	p.L295V	0.999	76	0%	126	35.7%	0	-	benign(0.022)	tolerated(0.46)	neutral(0.013)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
NCBP1	4686	genome.wustl.edu	37	9	100410468	100410468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002486.4	+1	reviewed	p.V287A	1.000	82	0%	77	35.1%	8	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM-type_fold
NANS	54187	genome.wustl.edu	37	9	100845273	100845273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018946.3	+1	reviewed	p.V339A	0.168	46	0%	57	31.6%	447	49.2%	benign(0.317)	deleterious(0.01)	deleterious(0.505)	superfamily_AFP III-like domain (Pfam 01354),HMMPfam_SAF
TEX10	54881	genome.wustl.edu	37	9	103090176	103090176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.R565Q	1.000	173	0%	127	25.2%	27	40.7%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
OR13C3	138803	genome.wustl.edu	37	9	107298109	107298109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001961.1	-1	provisional	p.R329I	1.000	266	0%	265	28.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF81321
ABCA1	19	genome.wustl.edu	37	9	107645350	107645350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005502.2	-1	reviewed	p.T131A	0.013	139	0%	139	22.3%	3	66.6%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
RAD23B	5887	genome.wustl.edu	37	9	110062463	110062463	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002874.3	+1	reviewed	p.K36N	1.000	118	0%	104	37.5%	32	59.3%	benign(0.008)	tolerated(0.24)	neutral(0.037)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
OR2K2	26248	genome.wustl.edu	37	9	114090248	114090248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205859.1	-1	provisional	p.A156T	0.064	192	0%	156	32.7%	0	-	benign(0.229)	deleterious(0.04)	neutral(0.372)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SUSD1	64420	genome.wustl.edu	37	9	114874078	114874078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374263	-1	known	p.R343C	0.974	71	0%	136	33.8%	10	70%	benign(0.118)	deleterious(0.01)	neutral(0.415)	NULL
PTGS1	5742	genome.wustl.edu	37	9	125148756	125148756	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000962.2	+1	reviewed	p.Y347	0.875	77	0%	134	30.6%	25	52%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
OR5C1	392391	genome.wustl.edu	37	9	125551633	125551633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001923.1	+1	provisional	p.S141L	1.000	111	0%	171	26.9%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RABGAP1	23637	genome.wustl.edu	37	9	125838991	125838991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012197.3	+1	validated	p.R792C	1.000	116	0%	152	34.9%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ypt/Rab-GAP domain of gyp1p
LRSAM1	90678	genome.wustl.edu	37	9	130217327	130217327	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005373.1	+1	validated	p.L41	1.000	34	0%	76	38.2%	3	33.3%	-	-	-	superfamily_L domain-like
TMSB4XP4	7118	genome.wustl.edu	37	9	131104549	131104549	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000323496	+1	known	p.F13	1.000	22	0%	25	28%	2	0%	-	-	-	HMMPfam_Thymosin,HMMSmart_THY
ABL1	25	genome.wustl.edu	37	9	133729585	133729585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007313.2	+1	reviewed	p.F91V	1.000	179	0%	271	31.7%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
NTNG2	84628	genome.wustl.edu	37	9	135114519	135114519	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032536.2	+1	validated	p.R361	1.000	10	0%	28	39.3%	0	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin
SETX	23064	genome.wustl.edu	37	9	135176062	135176062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.E1835K	0.385	205	0%	302	10.9%	2	0%	benign(0.344)	tolerated(0.29)	neutral(0.138)	NULL
SETX	23064	genome.wustl.edu	37	9	135202168	135202168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.R1606Q	0.998	353	0.3%	402	17.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SARDH	1757	genome.wustl.edu	37	9	136529114	136529114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134707.1	-1	reviewed	p.S885N	1.000	16	0%	55	27.3%	1	0%	benign(0.003)	tolerated(0.27)	neutral(0.034)	superfamily_SSF101790
VAV2	7410	genome.wustl.edu	37	9	136637093	136637093	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134398.1	-1	reviewed	p.F737	0.992	43	0%	99	36.4%	26	46.1%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
KCNT1	57582	genome.wustl.edu	37	9	138651597	138651597	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020822.2	+1	validated	p.I309	1.000	4	0.000	17	0.412	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
WDR37	22884	genome.wustl.edu	37	10	1123910	1123910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014023.3	+1	reviewed	p.E68*	1.000	78	0%	130	31.5%	0	-	-	-	-	NULL
PITRM1	10531	genome.wustl.edu	37	10	3207618	3207618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014889.2	-1	validated	p.E174K	1.000	35	0%	73	13.7%	8	12.5%	benign(0.065)	tolerated(0.61)	neutral(0.009)	superfamily_LuxS/MPP-like metallohydrolase
SFMBT2	57713	genome.wustl.edu	37	10	7230654	7230654	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029880.1	-1	provisional	p.R580	1.000	51	0%	101	31.7%	0	-	-	-	-	NULL
SEPHS1	22929	genome.wustl.edu	37	10	13386914	13386914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012247.3	-1	reviewed	p.E13K	1.000	102	0%	84	21.4%	34	50%	benign(0.139)	tolerated(0.06)	neutral(0.335)	NULL
HSPA14	51182	genome.wustl.edu	37	10	14890638	14890638	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441647	+1	known	p.S73L	0.787	50	0%	67	29.9%	4	75%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
FAM188A	80013	genome.wustl.edu	37	10	15879309	15879309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024948.2	-1	validated	p.S157L	1.000	335	0%	261	29.5%	5	20%	benign(0.006)	tolerated(0.21)	neutral(0.044)	NULL
TRDMT1	1787	genome.wustl.edu	37	10	17199651	17199651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004412.5	-1	reviewed	p.D226Y	0.997	101	0%	93	33.3%	3	33.3%	possibly_damaging(0.44)	deleterious(0.02)	deleterious(0.526)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
MRC1	4360	genome.wustl.edu	37	10	17917129	17917129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009567.1	+1	reviewed	p.V805A	1.000	117	0%	118	30.5%	0	-	possibly_damaging(0.935)	deleterious(0.01)	deleterious(0.786)	HMMSmart_SM00034,superfamily_C-type lectin-like
SLC39A12	221074	genome.wustl.edu	37	10	18250573	18250573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145195.1	+1	validated	p.E109*	1.000	209	0%	237	28.7%	0	-	-	-	-	NULL
GAD2	2572	genome.wustl.edu	37	10	26513546	26513546	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000818.2	+1	reviewed	p.W230*	1.000	92	0%	106	28.3%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
APBB1IP	54518	genome.wustl.edu	37	10	26789913	26789913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019043.3	+1	validated	p.S109Y	0.003	194	0%	240	30%	2	0%	possibly_damaging(0.679)	deleterious(0)	deleterious(0.686)	NULL
APBB1IP	54518	genome.wustl.edu	37	10	26822424	26822424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019043.3	+1	validated	p.M290I	1.000	26	0%	33	27.3%	0	-	benign(0.307)	tolerated(0.24)	neutral(0.133)	NULL
PDSS1	23590	genome.wustl.edu	37	10	27012809	27012809	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014317.3	+1	reviewed	p.I228	0.998	121	0%	160	18.1%	10	10%	-	-	-	HMMPfam_polyprenyl_synt,superfamily_Terpenoid synthases
RAB18	22931	genome.wustl.edu	37	10	27793920	27793920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423465	+1	known	p.R40I	0.254	76	0%	107	31.8%	0	-	-	-	-	NULL
ARMC4	55130	genome.wustl.edu	37	10	28229653	28229653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018076.2	-1	validated	p.R609C	1.000	122	0%	115	40%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00185,superfamily_ARM repeat
LYZL2	119180	genome.wustl.edu	37	10	30915043	30915043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183058.2	-1	validated	p.A143T	0.984	87	0%	118	26.3%	0	-	benign(0.382)	tolerated(0.35)	neutral(0.142)	HMMPfam_Lys,HMMSmart_LYZ1,PatternScan_LACTALBUMIN_LYSOZYME_1,superfamily_SSF53955
KIF5B	3799	genome.wustl.edu	37	10	32324588	32324588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004521.2	-1	validated	p.V275A	1.000	109	0%	120	33.3%	9	77.7%	possibly_damaging(0.456)	deleterious(0)	deleterious(0.594)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
CCDC7	221016	genome.wustl.edu	37	10	32740748	32740748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001026383.1	+1	validated	p.E60*	1.000	92	0%	99	20.2%	2	0%	-	-	-	NULL
C10orf68	79741	genome.wustl.edu	37	10	32974982	32974982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024688.2	+1	validated	p.E43A	0.000	81	0%	125	31.2%	1	100%	possibly_damaging(0.666)	tolerated(0.06)	deleterious(0.558)	NULL
CUL2	8453	genome.wustl.edu	37	10	35333532	35333532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003591.2	-1	provisional	p.L226V	1.000	101	0%	141	33.3%	4	25%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Cullin,superfamily_Cullin repeat
CREM	1390	genome.wustl.edu	37	10	35467886	35467886	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181571.1	+1	reviewed	p.E80*	1.000	58	0%	50	16%	12	0%	-	-	-	HMMPfam_pKID
NAMPTL	646309	genome.wustl.edu	37	10	36812683	36812683	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440465	-1	known	p.T160	0.956	92	0%	113	14.2%	14	0%	-	-	-	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37508274	37508274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.I1156L	0.001	361	0%	226	35.4%	0	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
RET	5979	genome.wustl.edu	37	10	43606666	43606666	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020975.4	+1	reviewed	p.V425	0.998	5	0.000	40	0.275	0	-	-	-	-	NULL
ZNF485	220992	genome.wustl.edu	37	10	44112108	44112108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145312.3	+1	validated	p.R206I	1.000	85	0%	119	16%	0	-	benign(0.179)	tolerated(0.06)	neutral(0.339)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RASSF4	83937	genome.wustl.edu	37	10	45485142	45485142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032023.3	+1	reviewed	p.A220T	1.000	20	0%	39	28.2%	13	69.2%	benign(0.015)	deleterious(0.01)	neutral(0.406)	HMMPfam_RA,HMMSmart_SM00314
ZNF22	7570	genome.wustl.edu	37	10	45498900	45498900	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006963.4	+1	validated	p.R28	0.679	68	0%	55	32.7%	24	58.3%	-	-	-	NULL
ZFAND4	93550	genome.wustl.edu	37	10	46113631	46113631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128324.1	-1	validated	p.L669I	1.000	103	0%	144	26.4%	10	60%	benign(0.043)	tolerated(0.06)	neutral(0.325)	HMMPfam_zf-AN1,HMMSmart_SM00154
FAM21C	253725	genome.wustl.edu	37	10	46280278	46280278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015262.2	+1	validated	p.P871S	0.786	598	0.2%	720	24.6%	4	75%	benign(0.076)	deleterious(0.02)	neutral(0.389)	NULL
PPYR1	5540	genome.wustl.edu	37	10	47086862	47086862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005972.4	+1	validated	p.P27T	0.001	134	0%	292	16.4%	0	-	benign(0.077)	tolerated(0.43)	neutral(0.019)	superfamily_Family A G protein-coupled receptor-like
FRMPD2	143162	genome.wustl.edu	37	10	49459707	49459707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018071.3	-1	reviewed	p.A18D	1.000	58	0%	72	30.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00750
MAPK8	5599	genome.wustl.edu	37	10	49617972	49617972	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139047.1	+1	reviewed	p.F101L	1.000	317	0%	327	33.3%	11	81.8%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AGAP7	653268	genome.wustl.edu	37	10	51464676	51464676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077685.1	-1	provisional	p.E594K	1.000	80	0%	111	19.8%	3	0%	probably_damaging(0.99)	tolerated(0.72)	neutral(0.443)	superfamily_ANK
FAM13C	220965	genome.wustl.edu	37	10	61007423	61007423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143773.1	-1	validated	p.R487K	1.000	296	0%	254	32.7%	1	0%	probably_damaging(0.988)	tolerated(0.15)	deleterious(0.678)	NULL
ANK3	288	genome.wustl.edu	37	10	61835108	61835108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.S1844*	1.000	269	0%	260	33.8%	0	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61994479	61994479	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.L288	0.995	59	0%	66	21.2%	1	100%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ARID5B	84159	genome.wustl.edu	37	10	63845621	63845621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.E454*	1.000	504	0%	629	30.8%	5	20%	-	-	-	NULL
ARID5B	84159	genome.wustl.edu	37	10	63850777	63850777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.E519K	0.002	182	0%	229	35.8%	4	0%	benign(0.01)	tolerated(0.41)	neutral(0.015)	NULL
RTKN2	219790	genome.wustl.edu	37	10	64022544	64022544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145307.2	-1	provisional	p.R33*	1.000	104	0%	93	29%	4	0%	-	-	-	HMMSmart_SM00742
DNA2	1763	genome.wustl.edu	37	10	70182086	70182086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080449.1	-1	provisional	p.D951N	0.002	73	0%	84	28.6%	6	33.3%	benign(0.001)	tolerated(0.41)	neutral(0.015)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNA2	1763	genome.wustl.edu	37	10	70225470	70225470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080449.1	-1	provisional	p.E267K	1.000	35	0%	84	33.3%	2	50%	benign(0.021)	tolerated(0.39)	neutral(0.017)	HMMPfam_Dna2
STOX1	219736	genome.wustl.edu	37	10	70641809	70641809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130161.2	+1	reviewed	p.A136T	0.997	169	0%	247	32.4%	1	0%	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMPfam_Stork_head
SUPV3L1	6832	genome.wustl.edu	37	10	70947501	70947501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003171.3	+1	provisional	p.I187M	0.991	40	0%	62	22.6%	11	36.3%	benign(0.055)	tolerated(0.11)	neutral(0.275)	superfamily_SSF52540
PPP3CB	5532	genome.wustl.edu	37	10	75231282	75231282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142353.1	-1	validated	p.L205I	1.000	217	0%	198	37.4%	10	30%	benign(0.164)	tolerated(0.08)	neutral(0.315)	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
DLG5	9231	genome.wustl.edu	37	10	79576335	79576335	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004747.3	-1	reviewed	p.A1333	0.012	24	0%	43	46.5%	19	42.1%	-	-	-	superfamily_PDZ domain-like
GHITM	27069	genome.wustl.edu	37	10	85909925	85909925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014394.2	+1	validated	p.A236V	0.997	128	0%	102	32.4%	229	44.5%	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	HMMPfam_UPF0005
LDB3	11155	genome.wustl.edu	37	10	88477859	88477859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007078.2	+1	reviewed	p.F605L	1.000	33	0%	70	21.4%	1	100%	possibly_damaging(0.946)	tolerated(0.14)	deleterious(0.639)	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130Q	1.000	369	0%	299	39.1%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R233*	0.984	360	0%	293	34.1%	45	11.1%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
LIPA	3988	genome.wustl.edu	37	10	91005432	91005432	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000235.2	-1	reviewed	e2+1	0.996	99	0%	132	27.3%	0	-	-	-	-	-
KIF20B	9585	genome.wustl.edu	37	10	91497657	91497657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.N980T	0.016	321	0%	259	30.9%	2	0%	benign(0.135)	tolerated(0.17)	neutral(0.070)	NULL
RPP30	10556	genome.wustl.edu	37	10	92660427	92660427	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104546.1	+1	validated	e11+2	1.000	283	0%	235	11.5%	95	16.8%	-	-	-	-
ANKRD1	27063	genome.wustl.edu	37	10	92675581	92675581	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014391.2	-1	reviewed	p.E236	1.000	58	0%	50	36%	14	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
BTAF1	9044	genome.wustl.edu	37	10	93695422	93695422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003972.2	+1	validated	p.R8H	1.000	127	0%	139	38.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PLCE1	51196	genome.wustl.edu	37	10	96030304	96030304	+	Missense_Mutation	SNP	C	C	T	rs121912605		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.S1484L	1.000	123	0%	170	34.1%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
COX15	1355	genome.wustl.edu	37	10	101483779	101483779	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078470.4	-1	reviewed	p.G228	0.864	175	0%	209	39.2%	24	41.6%	-	-	-	HMMPfam_COX15-CtaA
ABCC2	1244	genome.wustl.edu	37	10	101590170	101590170	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.F909L	0.967	95	0%	123	14.6%	0	-	benign(0)	tolerated(1)	-	NULL
PKD2L1	9033	genome.wustl.edu	37	10	102089040	102089040	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016112.2	-1	reviewed	p.R93	1.000	42	0%	93	19.4%	0	-	-	-	-	NULL
PPRC1	23082	genome.wustl.edu	37	10	103909051	103909051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015062.3	+1	reviewed	p.R1619Q	1.000	50	0%	85	29.4%	97	49.4%	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	NULL
ELOVL3	83401	genome.wustl.edu	37	10	103988814	103988814	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152310.1	+1	provisional	p.Q206	1.000	26	0%	57	12.3%	1	0%	-	-	-	HMMPfam_ELO
OBFC1	79991	genome.wustl.edu	37	10	105648830	105648830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024928.4	-1	validated	p.H317Y	0.997	61	0%	95	18.9%	52	42.3%	benign(0.005)	tolerated(0.45)	neutral(0.012)	HMMPfam_DUF1879
WDR96	80217	genome.wustl.edu	37	10	105932175	105932175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025145.5	-1	provisional	p.V860G	1.000	171	0%	207	24.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
CCDC147	159686	genome.wustl.edu	37	10	106160580	106160580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.R653K	1.000	155	0%	154	37.7%	0	-	benign(0.163)	tolerated(0.17)	neutral(0.073)	NULL
SORCS1	114815	genome.wustl.edu	37	10	108339212	108339212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.P1096S	0.974	127	0%	182	27.5%	1	0%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
SORCS1	114815	genome.wustl.edu	37	10	108459026	108459026	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.E453	1.000	91	0%	84	23.8%	0	-	-	-	-	HMMSmart_VPS10,superfamily_SSF110296
PDCD4	27250	genome.wustl.edu	37	10	112657809	112657809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014456.3	+1	reviewed	p.E458G	1.000	243	0.4%	191	33%	118	38.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SHOC2	8036	genome.wustl.edu	37	10	112769007	112769007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007373.3	+1	reviewed	p.V429A	1.000	77	0%	74	13.5%	2	0%	benign(0.101)	deleterious(0.05)	neutral(0.353)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
FAM160B1	57700	genome.wustl.edu	37	10	116621012	116621012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020940.3	+1	validated	p.R704Q	1.000	127	0%	134	29.9%	6	16.6%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
PNLIP	5406	genome.wustl.edu	37	10	118313334	118313334	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000936.2	+1	reviewed	p.T185	0.000	27	0%	31	25.8%	0	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
SEC23IP	11196	genome.wustl.edu	37	10	121658165	121658165	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007190.2	+1	reviewed	p.S130	0.000	419	0.2%	537	28.5%	4	25%	-	-	-	NULL
SEC23IP	11196	genome.wustl.edu	37	10	121685667	121685667	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007190.2	+1	reviewed	p.R747	1.000	162	0%	149	32.9%	12	33.3%	-	-	-	NULL
FANK1	92565	genome.wustl.edu	37	10	127697100	127697100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145235.3	+1	validated	p.N277T	1.000	87	0%	105	24.8%	41	58.5%	benign(0.044)	tolerated(0.35)	neutral(0.023)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NPS	594857	genome.wustl.edu	37	10	129350873	129350873	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030013.1	+1	provisional	p.K80N	1.000	224	0%	248	27.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
EBF3	253738	genome.wustl.edu	37	10	131671739	131671739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355311	-1	known	p.T253M	1.000	41	0%	68	48.5%	0	-	possibly_damaging(0.648)	tolerated(0.06)	deleterious(0.550)	NULL
ATHL1	80162	genome.wustl.edu	37	11	292645	292645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025092.4	+1	validated	p.L376V	0.061	4	0.000	9	0.556	29	44.8%	possibly_damaging(0.736)	deleterious(0.01)	deleterious(0.675)	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases
MUC5B	727897	genome.wustl.edu	37	11	1263423	1263423	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.P1774	0.000	13	0%	45	35.6%	2	100%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1267606	1267606	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.E3169*	0.000	30	0%	67	40.3%	7	14.2%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271044	1271044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T4315A	0.001	36	0%	67	31.3%	6	66.6%	unknown(0)	-	-	NULL
NAP1L4	4676	genome.wustl.edu	37	11	2993340	2993340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005969.3	-1	reviewed	p.F103V	1.000	168	0%	215	29.8%	74	50%	benign(0.08)	tolerated(0.1)	neutral(0.292)	HMMPfam_NAP
RHOG	391	genome.wustl.edu	37	11	3849290	3849290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001665.3	-1	validated	p.A27T	0.995	22	0%	64	25%	72	44.4%	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR52R1	119695	genome.wustl.edu	37	11	4825161	4825161	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005177.3	-1	validated	p.I229	0.000	162	0%	173	34.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51Q1	390061	genome.wustl.edu	37	11	5443786	5443786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004757.2	+1	validated	p.A119V	1.000	455	0%	458	33%	0	-	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM5	85363	genome.wustl.edu	37	11	5701172	5701172	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033034.2	-1	reviewed	p.K79T	0.984	137	0%	182	30.8%	9	33.3%	benign(0.055)	deleterious(0)	neutral(0.448)	superfamily_RING/U-box
OR52N1	79473	genome.wustl.edu	37	11	5809120	5809120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001913.1	-1	provisional	p.F309L	0.369	338	0%	320	30%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF81321
OR52E4	390081	genome.wustl.edu	37	11	5905801	5905801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005165.1	+1	provisional	p.E93D	0.051	416	0.2%	318	31.8%	0	-	benign(0.023)	tolerated(0.12)	neutral(0.262)	HMMPfam_7tm_1,superfamily_SSF81321
OR56A1	120796	genome.wustl.edu	37	11	6048169	6048169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001917.2	-1	validated	p.L256I	0.002	247	0%	215	34.4%	0	-	benign(0.09)	deleterious(0.01)	neutral(0.412)	HMMPfam_7tm_1,superfamily_SSF81321
OR52B2	255725	genome.wustl.edu	37	11	6191186	6191186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004052.1	-1	provisional	p.R124H	1.000	344	0%	387	31.3%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SMPD1	6609	genome.wustl.edu	37	11	6414911	6414911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000543.3	+1	reviewed	p.R443Q	0.993	45	0%	96	34.4%	14	0%	possibly_damaging(0.782)	tolerated(0.2)	neutral(0.342)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
DCHS1	8642	genome.wustl.edu	37	11	6662658	6662658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.D63N	1.000	7	0.000	11	0.455	0	-	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	HMMPfam_Cadherin,superfamily_Cadherin
OR2AG1	144125	genome.wustl.edu	37	11	6806533	6806533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004489.2	+1	validated	p.E89*	0.001	240	0%	199	27.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF215	7762	genome.wustl.edu	37	11	6977532	6977532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013250.2	+1	validated	p.K442E	0.012	264	0%	230	32.6%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_C2H2 and C2HC zinc fingers
NLRP14	338323	genome.wustl.edu	37	11	7063897	7063897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176822.3	+1	reviewed	p.F214L	1.000	231	0%	188	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NACHT
ST5	6764	genome.wustl.edu	37	11	8715677	8715677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.G1127D	1.000	53	0%	84	33.3%	90	35.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF143	7702	genome.wustl.edu	37	11	9517878	9517878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003442.5	+1	validated	p.R265Q	1.000	63	0%	71	28.2%	5	80%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_C2H2 and C2HC zinc fingers
USP47	55031	genome.wustl.edu	37	11	11959901	11959901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017944.3	+1	validated	p.F657L	1.000	90	0%	65	30.8%	7	14.2%	benign(0.032)	tolerated(0.31)	neutral(0.029)	NULL
COPB1	1315	genome.wustl.edu	37	11	14508011	14508011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144061.1	-1	reviewed	p.R247C	1.000	237	0%	246	31.3%	17	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
ABCC8	6833	genome.wustl.edu	37	11	17464343	17464343	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000352.3	-1	reviewed	p.F518	1.000	34	0%	66	16.7%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
USH1C	10083	genome.wustl.edu	37	11	17547929	17547929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153676.3	-1	reviewed	p.F213L	1.000	12	0%	34	17.6%	0	-	probably_damaging(0.967)	tolerated(0.06)	deleterious(0.732)	HMMPfam_PDZ,superfamily_PDZ
MRGPRX3	117195	genome.wustl.edu	37	11	18158857	18158857	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054031.3	+1	reviewed	p.I36	0.938	161	0%	213	29.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
PTPN5	84867	genome.wustl.edu	37	11	18762153	18762153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006906.1	-1	validated	p.F304L	1.000	19	0%	43	25.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ANO3	63982	genome.wustl.edu	37	11	26574805	26574805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031418.2	+1	validated	p.I433M	1.000	525	0%	444	31.1%	0	-	possibly_damaging(0.925)	tolerated(0.38)	neutral(0.391)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33565480	33565480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012194.1	+1	validated	p.D494N	0.806	240	0%	278	29.1%	0	-	benign(0.139)	deleterious(0.02)	neutral(0.395)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33689584	33689584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012194.1	+1	validated	p.D1818N	0.998	32	0%	38	18.4%	0	-	possibly_damaging(0.819)	deleterious(0.04)	deleterious(0.658)	NULL
NAT10	55226	genome.wustl.edu	37	11	34139774	34139774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024662.2	+1	validated	p.D202G	1.000	64	0%	76	17.1%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C11orf74	119710	genome.wustl.edu	37	11	36654935	36654935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138787.2	+1	predicted	p.L80I	0.367	140	0%	112	28.6%	30	56.6%	benign(0.35)	tolerated(0.3)	neutral(0.140)	NULL
API5	8539	genome.wustl.edu	37	11	43351561	43351561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142930.1	+1	validated	p.R392C	1.000	131	0%	105	31.4%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_API5,superfamily_ARM-type_fold
TTC17	55761	genome.wustl.edu	37	11	43419005	43419005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018259.5	+1	validated	p.F294L	1.000	360	0%	367	39.2%	6	16.6%	benign(0)	tolerated(0.71)	neutral(0.002)	superfamily_SSF48452
EXT2	2132	genome.wustl.edu	37	11	44193272	44193272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000401.3	+1	reviewed	p.W442R	1.000	318	0%	328	30.5%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46564236	46564236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017749.2	-1	validated	p.S354L	0.999	45	4.4%	90	37.8%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CKAP5	9793	genome.wustl.edu	37	11	46784276	46784276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.R1310C	1.000	156	0.6%	150	20.7%	28	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
NR1H3	10062	genome.wustl.edu	37	11	47282993	47282993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005693.2	+1	validated	p.R234Q	1.000	49	0%	108	25%	31	32.2%	benign(0.155)	tolerated(0.19)	neutral(0.063)	superfamily_Nuclear receptor ligand-binding domain
LOC340970	340970	genome.wustl.edu	37	11	49013331	49013331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343062.1	-1	model	p.C35R	1.000	160	0%	157	27.4%	0	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
ENSG00000181950	0	genome.wustl.edu	37	11	55234662	55234662	+	Missense_Mutation	SNP	C	C	A	rs181940029	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314689	+1	known	p.S44Y	0.000	126	0%	177	32.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C11	219429	genome.wustl.edu	37	11	55371520	55371520	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004700.1	-1	provisional	p.I110	0.886	248	0%	206	10.7%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703607	55703607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006637.1	-1	reviewed	p.E90D	0.000	284	0%	189	33.9%	0	-	benign(0.007)	tolerated(0.28)	neutral(0.032)	HMMPfam_7tm_1,superfamily_SSF81321
OR8H2	390151	genome.wustl.edu	37	11	55872802	55872802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005200.1	+1	provisional	p.T95M	0.000	993	0%	738	31.3%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMPfam_7tm_1,superfamily_SSF81321
OR8K5	219453	genome.wustl.edu	37	11	55927111	55927111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004058.2	-1	validated	p.M228T	0.007	231	0%	240	34.6%	0	-	possibly_damaging(0.707)	deleterious(0.01)	deleterious(0.661)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043864	56043864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004745.1	+1	provisional	p.F250L	0.607	496	0%	534	31.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR9G1	390174	genome.wustl.edu	37	11	56467967	56467967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005213.1	+1	provisional	p.S35F	0.000	303	0%	243	20.6%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	superfamily_SSF81321
OR5AK3P	81228	genome.wustl.edu	37	11	56739023	56739023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326876	+1	known	p.S167P	0.000	71	0%	94	19.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5AN1	390195	genome.wustl.edu	37	11	59132298	59132298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004729.1	+1	provisional	p.R123C	1.000	426	0%	426	30%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
GIF	2694	genome.wustl.edu	37	11	59610010	59610010	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005142.2	-1	reviewed	p.I139	0.837	95	0%	135	17%	0	-	-	-	-	HMMPfam_Cobalamin_bind
TTC9C	283237	genome.wustl.edu	37	11	62496346	62496346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173810.3	+1	provisional	p.Q9R	1.000	20	0%	38	15.8%	23	39.1%	benign(0)	tolerated(0.36)	neutral(0.020)	HMMSmart_SM00028,superfamily_TPR-like
FERMT3	83706	genome.wustl.edu	37	11	63987447	63987447	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178443.2	+1	reviewed	p.D392	0.301	12	0%	33	57.6%	6	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,HMMPfam_FERM_M,HMMSmart_SM00295,superfamily_PH domain-like
SART1	9092	genome.wustl.edu	37	11	65744523	65744523	+	Silent	SNP	G	G	A	rs185941895	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005146.4	+1	reviewed	p.P632	0.999	17	0%	32	28.1%	175	40.5%	-	-	-	HMMPfam_SART-1
CATSPER1	117144	genome.wustl.edu	37	11	65787798	65787798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.A685V	0.603	27	0%	35	28.6%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	superfamily_Voltage-gated potassium channels
NPAS4	266743	genome.wustl.edu	37	11	66190287	66190287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178864.3	+1	validated	p.F191L	1.000	22	0%	70	42.9%	0	-	benign(0.34)	tolerated(0.27)	neutral(0.141)	NULL
PPP6R3	55291	genome.wustl.edu	37	11	68305257	68305257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018312.4	+1	validated	p.R42H	1.000	69	0%	76	30.3%	0	-	benign(0.123)	tolerated(0.14)	neutral(0.260)	NULL
PPP6R3	55291	genome.wustl.edu	37	11	68367930	68367930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018312.4	+1	validated	p.W640*	1.000	93	0%	123	29.3%	8	0%	-	-	-	NULL
RNF121	55298	genome.wustl.edu	37	11	71705778	71705778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018320.4	+1	reviewed	p.S214L	1.000	69	0%	163	28.2%	13	38.4%	possibly_damaging(0.56)	tolerated(0.13)	neutral(0.444)	superfamily_SSF57850
NUMA1	4926	genome.wustl.edu	37	11	71726137	71726137	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.E804	0.278	15	0%	40	17.5%	46	19.5%	-	-	-	NULL
C2CD3	26005	genome.wustl.edu	37	11	73796730	73796730	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015531.4	-1	validated	p.C1281	1.000	75	0%	83	26.5%	0	-	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
XRRA1	143570	genome.wustl.edu	37	11	74563071	74563071	+	Silent	SNP	G	G	A	rs188659360	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182969.1	-1	validated	p.F401	0.017	64	0%	93	23.7%	3	0%	probably_damaging(0.965)	-	-	superfamily_L domain-like
MOGAT2	80168	genome.wustl.edu	37	11	75439135	75439135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025098.2	+1	provisional	p.F199S	0.085	16	0%	26	23.1%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_DAGAT
UVRAG	7405	genome.wustl.edu	37	11	75562938	75562938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003369.3	+1	reviewed	p.R43Q	1.000	289	0%	373	27.6%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_C2,superfamily_C2_CaLB
UVRAG	7405	genome.wustl.edu	37	11	75572800	75572800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003369.3	+1	reviewed	p.R82K	1.000	35	0%	46	26.1%	1	0%	benign(0)	tolerated(0.2)	neutral(0.049)	HMMSmart_C2,superfamily_C2_CaLB
UVRAG	7405	genome.wustl.edu	37	11	75718615	75718615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003369.3	+1	reviewed	p.R317C	1.000	147	0%	160	34.4%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76158035	76158035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020193.3	+1	validated	p.R18I	1.000	76	0%	105	29.5%	2	100%	possibly_damaging(0.527)	tolerated(0.06)	deleterious(0.500)	HMMPfam_ENT
NDUFC2	4718	genome.wustl.edu	37	11	77784179	77784179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004549.4	-1	validated	p.R59C	1.000	210	0%	380	33.7%	335	35.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NDUF_C2
CCDC89	220388	genome.wustl.edu	37	11	85396179	85396179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152723.1	-1	provisional	p.R332H	0.164	152	0%	128	38.3%	3	33.3%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
C11orf73	51501	genome.wustl.edu	37	11	86056716	86056716	+	RNA	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024596.1	+1	validated	NULL	0.657	77	0%	58	27.6%	18	72.2%	-	-	-	-
ENSG00000204456	0	genome.wustl.edu	37	11	89500140	89500140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000375974	-1	known	p.S76P	0.000	152	0%	177	23.7%	0	-	-	-	-	NULL
FAT3	120114	genome.wustl.edu	37	11	92623929	92623929	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.L4442	0.372	32	0%	65	35.4%	0	-	-	-	-	NULL
CCDC67	159989	genome.wustl.edu	37	11	93088644	93088644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181645.3	+1	validated	p.R46Q	0.940	92	0%	88	29.5%	0	-	possibly_damaging(0.67)	tolerated(0.38)	neutral(0.255)	NULL
MED17	9440	genome.wustl.edu	37	11	93526927	93526927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004268.4	+1	reviewed	p.V224G	1.000	86	0%	97	21.6%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2364
HEPHL1	341208	genome.wustl.edu	37	11	93778868	93778868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.P67L	1.000	94	0%	134	17.9%	0	-	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	superfamily_Cupredoxin
HEPHL1	341208	genome.wustl.edu	37	11	93779019	93779019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.K117N	1.000	132	0%	182	30.2%	0	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_3
TMEM133	83935	genome.wustl.edu	37	11	100863100	100863100	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032021.2	+1	validated	p.E21*	0.003	166	0%	125	33.6%	2	50%	-	-	-	NULL
PGR	5241	genome.wustl.edu	37	11	100996830	100996830	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000926.4	-1	reviewed	p.I566S	0.998	40	0%	55	25.5%	10	70%	benign(0.021)	deleterious(0)	neutral(0.446)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MMP3	4314	genome.wustl.edu	37	11	102713510	102713510	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002422.3	-1	reviewed	p.S81	0.000	80	0%	73	31.5%	0	-	-	-	-	HMMPfam_PG_binding_1,superfamily_PGBD-like
MMP13	4322	genome.wustl.edu	37	11	102815092	102815092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002427.3	-1	reviewed	p.Y440C	0.986	132	0%	155	35.5%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
DYNC2H1	79659	genome.wustl.edu	37	11	102991711	102991711	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.E436*	1.000	27	0%	25	32%	0	-	-	-	-	HMMPfam_DHC_N1
DYNC2H1	79659	genome.wustl.edu	37	11	103026164	103026164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.E1226D	1.000	113	0%	80	31.2%	0	-	benign(0.07)	tolerated(0.12)	neutral(0.266)	HMMPfam_DHC_N2
DDI1	414301	genome.wustl.edu	37	11	103907653	103907653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001711.2	+1	validated	p.E35K	0.992	112	0%	108	38.9%	0	-	possibly_damaging(0.848)	deleterious(0.03)	deleterious(0.690)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
AASDHPPT	60496	genome.wustl.edu	37	11	105967615	105967615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015423.2	+1	reviewed	p.R304Q	0.969	108	0.9%	103	40.8%	20	30%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
ATM	472	genome.wustl.edu	37	11	108173607	108173607	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.E1783*	0.901	223	0%	208	31.2%	0	-	-	-	-	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108190750	108190750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.E2139D	1.000	121	0%	126	11.1%	0	-	benign(0.286)	tolerated(0.7)	neutral(0.090)	HMMPfam_FAT,superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108205734	108205734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.I2683M	0.639	132	0%	130	33.8%	3	33.3%	possibly_damaging(0.572)	deleterious(0.01)	deleterious(0.602)	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
BTG4	54766	genome.wustl.edu	37	11	111365929	111365929	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017589.2	-1	reviewed	p.K207	0.176	190	0%	166	27.7%	2	0%	-	-	-	NULL
ANKK1	255239	genome.wustl.edu	37	11	113270483	113270483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178510.1	+1	reviewed	p.H598N	1.000	4	0.000	21	0.333	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
DRD2	1813	genome.wustl.edu	37	11	113286177	113286177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000795.3	-1	reviewed	p.R230Q	0.996	67	0%	142	29.6%	0	-	benign(0.127)	tolerated(0.96)	neutral(0.011)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HTR3B	9177	genome.wustl.edu	37	11	113802105	113802105	+	Splice_Site	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006028.3	+1	reviewed	e3-1	1.000	44	0%	82	30.5%	0	-	-	-	-	-
HTR3B	9177	genome.wustl.edu	37	11	113802527	113802527	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006028.3	+1	reviewed	p.E102	0.707	122	0%	167	34.1%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
FAM55A	120400	genome.wustl.edu	37	11	114393786	114393786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152315.2	-1	validated	p.Q166R	0.012	209	0%	171	34.5%	0	-	benign(0.003)	tolerated(0.45)	neutral(0.012)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117374633	117374633	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.I822	0.970	12	0%	42	38.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
AMICA1	120425	genome.wustl.edu	37	11	118074145	118074145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098526.1	-1	validated	p.R257Q	0.000	507	0%	703	32.7%	0	-	probably_damaging(0.956)	tolerated(0.26)	neutral(0.433)	NULL
MLL	4297	genome.wustl.edu	37	11	118374094	118374094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.S2493F	0.442	160	0%	182	28%	0	-	benign(0.303)	-	-	NULL
ARCN1	372	genome.wustl.edu	37	11	118461177	118461177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001655.4	+1	reviewed	p.R314C	1.000	86	0%	135	36.3%	10	70%	possibly_damaging(0.945)	tolerated(0.13)	deleterious(0.642)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
UPK2	7379	genome.wustl.edu	37	11	118828379	118828379	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006760.3	+1	reviewed	e4+1	1.000	27	0%	48	37.5%	0	-	-	-	-	-
CCDC84	338657	genome.wustl.edu	37	11	118882686	118882686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198489.1	+1	provisional	p.A184V	0.038	89	0%	139	33.8%	12	58.3%	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
HYOU1	10525	genome.wustl.edu	37	11	118918791	118918791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130991.1	-1	reviewed	p.M793T	1.000	68	0%	88	36.4%	97	47.4%	benign(0.023)	tolerated(0.48)	neutral(0.011)	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
UBASH3B	84959	genome.wustl.edu	37	11	122677201	122677201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032873.4	+1	validated	p.I560R	1.000	110	0%	146	32.9%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGAM,superfamily_SSF53254
OR6M1	390261	genome.wustl.edu	37	11	123676550	123676550	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005325.1	-1	provisional	p.E170*	0.005	267	0%	214	28%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8D4	338662	genome.wustl.edu	37	11	123777351	123777351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005197.1	+1	provisional	p.F71L	0.972	428	0%	464	33%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8B12	219858	genome.wustl.edu	37	11	124413346	124413346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005195.1	-1	provisional	p.D69Y	0.983	293	0%	290	34.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SPA17	53340	genome.wustl.edu	37	11	124545165	124545165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017425.3	+1	reviewed	p.S2L	1.000	146	0.7%	155	29%	58	53.4%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC37A2	219855	genome.wustl.edu	37	11	124951675	124951675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198277.2	+1	validated	p.N253S	0.000	20	0%	42	21.4%	1	0%	benign(0)	tolerated(0.77)	neutral(0.001)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HYLS1	219844	genome.wustl.edu	37	11	125769318	125769318	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134793.1	+1	reviewed	p.R19*	0.253	77	0%	66	21.2%	34	91.1%	-	-	-	NULL
ETS1	2113	genome.wustl.edu	37	11	128360374	128360374	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143820.1	-1	validated	p.Q104	1.000	92	0%	155	27.7%	3	66.6%	-	-	-	HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SAM_homology
KCNJ1	3758	genome.wustl.edu	37	11	128710042	128710042	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000220.2	-1	reviewed	p.E52*	1.000	132	0%	192	32.3%	0	-	-	-	-	HMMPfam_IRK,superfamily_Voltage-gated potassium channels
SNX19	399979	genome.wustl.edu	37	11	130785043	130785043	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014758.2	-1	validated	p.L264	0.001	50	0%	85	38.8%	4	100%	-	-	-	HMMPfam_PXA,HMMSmart_SM00313
CACNA2D4	93589	genome.wustl.edu	37	12	1919485	1919485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172364.4	-1	reviewed	p.D894N	0.965	11	0%	42	19%	0	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	NULL
DYRK4	8798	genome.wustl.edu	37	12	4705829	4705829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003845.1	+1	provisional	p.N165T	0.999	53	0%	81	29.6%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KCNA5	3741	genome.wustl.edu	37	12	5154345	5154345	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002234.2	+1	reviewed	p.F344	0.790	34	0%	59	11.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CD163L1	283316	genome.wustl.edu	37	12	7585167	7585167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174941.4	-1	reviewed	p.S204Y	0.000	200	0%	166	21.7%	0	-	benign(0.013)	deleterious(0.02)	neutral(0.384)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
SLC2A14	144195	genome.wustl.edu	37	12	7984272	7984272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153449.2	-1	provisional	p.S90Y	0.836	60	0%	95	38.9%	0	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
FOXJ2	55810	genome.wustl.edu	37	12	8205425	8205425	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018416.2	+1	validated	p.F568	1.000	10	0%	36	38.9%	2	50%	-	-	-	NULL
FAM90A1	55138	genome.wustl.edu	37	12	8375299	8375299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018088.3	-1	validated	p.E172K	0.000	14	0%	33	33.3%	1	100%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
A2M	2	genome.wustl.edu	37	12	9230446	9230446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000014.4	-1	reviewed	p.A1043T	0.995	169	0%	142	12.7%	95	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
PZP	5858	genome.wustl.edu	37	12	9311046	9311046	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002864.2	-1	validated	p.S1088	0.015	205	0%	170	31.8%	0	-	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
KLRC3	3823	genome.wustl.edu	37	12	10568248	10568248	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007333.2	-1	reviewed	p.F245V	0.047	57	0%	74	41.9%	0	-	unknown(0)	-	-	NULL
ARHGDIB	397	genome.wustl.edu	37	12	15103494	15103494	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001175.4	-1	validated	p.T51	0.002	400	0%	357	31.4%	26	3.8%	-	-	-	HMMPfam_Rho_GDI,superfamily_E set domains
PTPRO	5800	genome.wustl.edu	37	12	15654583	15654583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030667.1	+1	reviewed	p.R231C	1.000	171	0%	153	28.8%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
PDE3A	5139	genome.wustl.edu	37	12	20774339	20774339	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000921.3	+1	validated	p.R512*	0.995	82	0%	63	23.8%	1	0%	-	-	-	NULL
RECQL	5965	genome.wustl.edu	37	12	21636461	21636461	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002907.3	-1	reviewed	p.E183	0.860	354	0%	332	30.4%	6	50%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNJ8	3764	genome.wustl.edu	37	12	21918719	21918719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004982.2	-1	reviewed	p.L405F	1.000	264	0%	293	18.8%	7	0%	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12D	1.000	42	0%	50	30%	1	0%	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
IFLTD1	160492	genome.wustl.edu	37	12	25699349	25699349	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145728.1	-1	validated	p.Y150*	0.949	233	0%	202	31.2%	0	-	-	-	-	superfamily_Lamin A/C globular tail domain
ITPR2	3709	genome.wustl.edu	37	12	26568245	26568245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.P2433T	0.987	159	0%	149	33.6%	6	50%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_Ion_trans
IPO8	10526	genome.wustl.edu	37	12	30806009	30806009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006390.2	-1	reviewed	p.L656I	1.000	193	0%	129	32.6%	3	33.3%	possibly_damaging(0.857)	tolerated(0.2)	neutral(0.380)	superfamily_ARM-type_fold
CPNE8	144402	genome.wustl.edu	37	12	39223234	39223234	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153634.2	-1	reviewed	p.C118	1.000	365	0%	281	30.6%	1	0%	-	-	-	HMMSmart_C2,superfamily_C2_CaLB
C12orf40	283461	genome.wustl.edu	37	12	40040646	40040646	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031748.2	+1	validated	p.N114H	0.000	110	0%	79	40.5%	0	-	benign(0.001)	-	-	NULL
C12orf40	283461	genome.wustl.edu	37	12	40114750	40114750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031748.2	+1	validated	p.E552D	0.000	205	0%	150	27.3%	0	-	possibly_damaging(0.532)	-	-	NULL
CNTN1	1272	genome.wustl.edu	37	12	41333284	41333284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001843.2	+1	reviewed	p.S459N	0.982	109	0%	60	28.3%	2	0%	possibly_damaging(0.858)	tolerated(0.18)	neutral(0.387)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
GXYLT1	283464	genome.wustl.edu	37	12	42499711	42499711	+	Missense_Mutation	SNP	C	C	T	rs76555438		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173601.1	-1	validated	p.R258H	1.000	124	0%	126	34.9%	2	100%	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
ADAMTS20	80070	genome.wustl.edu	37	12	43822260	43822260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.E1243D	1.000	100	0%	90	25.6%	0	-	benign(0.354)	tolerated(0.43)	neutral(0.126)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS20	80070	genome.wustl.edu	37	12	43925874	43925874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.S193Y	0.000	210	0%	236	30.5%	0	-	benign(0.01)	tolerated(0.17)	neutral(0.059)	NULL
NELL2	4753	genome.wustl.edu	37	12	45173726	45173726	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145107.1	-1	reviewed	p.E189*	1.000	254	0%	207	36.2%	0	-	-	-	-	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
ANO6	196527	genome.wustl.edu	37	12	45796859	45796859	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142679.1	+1	validated	p.L539	0.969	236	0%	279	28.7%	2	50%	-	-	-	NULL
ARID2	196528	genome.wustl.edu	37	12	46246049	46246049	+	Silent	SNP	T	T	G	rs146664069	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422737	+1	known	p.L1355R	1.000	183	0%	193	28%	1	100%	-	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49415845	49415845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.R5501Q	1.000	101	0%	173	34.1%	20	45%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
PRPF40B	25766	genome.wustl.edu	37	12	50036024	50036024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031698.1	+1	provisional	p.E609K	1.000	29	0%	58	34.5%	33	51.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCN8A	6334	genome.wustl.edu	37	12	52139748	52139748	+	Missense_Mutation	SNP	A	A	G	rs181076505	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.Q687R	1.000	131	0%	155	26.5%	0	-	possibly_damaging(0.681)	tolerated(0.34)	neutral(0.266)	NULL
KRT85	3891	genome.wustl.edu	37	12	52761185	52761185	+	Missense_Mutation	SNP	G	G	A	rs56033871		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.S2L	0.985	10	0%	23	47.8%	0	-	benign(0.208)	deleterious(0)	neutral(0.465)	NULL
KRT6B	3854	genome.wustl.edu	37	12	52841590	52841590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005555.3	-1	reviewed	p.R466C	1.000	218	0%	391	27.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament,PatternScan_IF
KRT76	51350	genome.wustl.edu	37	12	53170650	53170650	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015848.4	-1	reviewed	p.G142	0.000	28	0%	61	37.7%	0	-	-	-	-	NULL
CALCOCO1	57658	genome.wustl.edu	37	12	54105644	54105644	+	RNA	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026554.1	-1	validated	NULL	0.000	14	0%	72	33.3%	17	23.5%	-	-	-	-
HOXC5	3222	genome.wustl.edu	37	12	54428124	54428124	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018953.2	+1	reviewed	p.E173*	1.000	30	0%	55	27.3%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ITGA5	3678	genome.wustl.edu	37	12	54797491	54797491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002205.2	-1	reviewed	p.S565Y	1.000	39	0%	73	11%	4	0%	benign(0.248)	deleterious(0.04)	neutral(0.374)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
OR6C3	254786	genome.wustl.edu	37	12	55726085	55726085	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054104.1	+1	provisional	p.L201	0.000	373	0%	354	32.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6C65	403282	genome.wustl.edu	37	12	55795032	55795032	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005518.1	+1	provisional	p.S240	0.054	148	0%	144	31.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
METTL7B	196410	genome.wustl.edu	37	12	56077752	56077752	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152637.2	+1	validated	p.S218	0.616	165	0%	411	33.8%	0	-	-	-	-	superfamily_SSF53335
ITGA7	3679	genome.wustl.edu	37	12	56090126	56090126	+	Missense_Mutation	SNP	C	C	T	rs150583010	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144996.1	-1	reviewed	p.G614R	1.000	4	0.000	10	0.400	0	-	benign(0.001)	tolerated(0.69)	neutral(0.002)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
TIMELESS	8914	genome.wustl.edu	37	12	56818547	56818547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003920.3	-1	validated	p.R623W	1.000	45	0%	66	48.5%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BAZ2A	11176	genome.wustl.edu	37	12	56999815	56999815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013449.3	-1	validated	p.E766D	0.993	15	0%	23	30.4%	4	25%	possibly_damaging(0.942)	tolerated(0.41)	neutral(0.402)	NULL
SHMT2	6472	genome.wustl.edu	37	12	57628070	57628070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005412.5	+1	reviewed	p.R481C	0.991	38	0%	122	33.6%	287	35.1%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	superfamily_PyrdxlP-dep_Trfase_major
SLC26A10	65012	genome.wustl.edu	37	12	58018721	58018721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133489.2	+1	validated	p.R434C	0.298	50	0%	171	35.7%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
CDK4	1019	genome.wustl.edu	37	12	58145447	58145447	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000075.2	-1	reviewed	p.G18	1.000	54	0%	80	41.2%	109	45.8%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
IFNG	3458	genome.wustl.edu	37	12	68551796	68551796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000619.2	-1	reviewed	p.S88N	0.000	156	0%	144	40.3%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
MDM1	56890	genome.wustl.edu	37	12	68719294	68719294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017440.4	-1	reviewed	p.R187I	1.000	440	0.2%	465	33.8%	10	60%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
BEST3	144453	genome.wustl.edu	37	12	70070986	70070986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032735.2	-1	validated	p.V230I	1.000	97	0%	117	25.6%	0	-	benign(0.009)	tolerated(0.9)	neutral(0.001)	HMMPfam_Bestrophin
TBC1D15	64786	genome.wustl.edu	37	12	72291686	72291686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022771.4	+1	reviewed	p.R400I	1.000	156	0%	139	26.6%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
BBS10	79738	genome.wustl.edu	37	12	76740131	76740131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024685.3	-1	reviewed	p.S545F	0.000	291	0%	303	37.3%	0	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	superfamily_GroEL-ATPase
ZDHHC17	23390	genome.wustl.edu	37	12	77220694	77220694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015336.2	+1	validated	p.R302W	1.000	190	0%	124	30.6%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MYF6	4618	genome.wustl.edu	37	12	81102648	81102648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002469.2	+1	reviewed	p.S213L	1.000	82	0%	64	39.1%	0	-	probably_damaging(0.957)	tolerated(0.3)	neutral(0.429)	NULL
CCDC59	29080	genome.wustl.edu	37	12	82748291	82748291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014167.4	-1	validated	p.R183C	1.000	48	0%	43	27.9%	69	40.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85518171	85518171	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.L1294*	0.000	317	0%	282	29.8%	3	66.6%	-	-	-	NULL
MGAT4C	25834	genome.wustl.edu	37	12	86383187	86383187	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013244.3	-1	validated	p.S46	0.893	41	0%	52	40.4%	0	-	-	-	-	NULL
C12orf50	160419	genome.wustl.edu	37	12	88390377	88390377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152589.1	-1	predicted	p.K112N	1.000	144	0%	121	30.6%	0	-	possibly_damaging(0.818)	deleterious(0)	deleterious(0.754)	NULL
CEP290	80184	genome.wustl.edu	37	12	88512302	88512302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.R557C	1.000	82	0%	56	10.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLXNC1	10154	genome.wustl.edu	37	12	94603463	94603463	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005761.1	+1	provisional	p.R513*	0.989	235	0.4%	307	30.6%	1	0%	-	-	-	NULL
CDK17	5128	genome.wustl.edu	37	12	96707124	96707124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002595.3	-1	reviewed	p.R131H	1.000	89	0%	112	42.9%	1	100%	probably_damaging(0.999)	tolerated(0.46)	deleterious(0.502)	NULL
C12orf63	374467	genome.wustl.edu	37	12	97051792	97051792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198520.2	+1	validated	p.D170N	1.000	226	0%	218	32.6%	0	-	unknown(0)	tolerated(0.79)	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97085076	97085076	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198520.2	+1	validated	p.R509	0.958	108	0%	127	30.7%	0	-	-	-	-	NULL
ANKS1B	56899	genome.wustl.edu	37	12	99194779	99194779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152788.3	-1	validated	p.A1064V	1.000	96	0%	93	29%	0	-	possibly_damaging(0.842)	tolerated(0.27)	neutral(0.356)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
C12orf42	374470	genome.wustl.edu	37	12	103872168	103872168	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099336.1	-1	validated	p.E13*	0.003	74	0%	69	14.5%	0	-	-	-	-	NULL
TDG	6996	genome.wustl.edu	37	12	104376599	104376599	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003211.4	+1	reviewed	p.G167	0.994	251	0%	230	23%	10	30%	-	-	-	HMMPfam_UDG,superfamily_UDNA_glycsylseSF
GLT8D2	83468	genome.wustl.edu	37	12	104393197	104393197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031302.3	-1	provisional	p.S127L	0.137	273	0%	231	19.5%	1	0%	possibly_damaging(0.767)	deleterious(0)	deleterious(0.729)	HMMPfam_Glyco_transf_8,superfamily_SSF53448
ENSG00000179821	0	genome.wustl.edu	37	12	105371541	105371541	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312876	-1	known	p.D83A	1.000	32	0%	43	44.2%	0	-	-	-	-	HMMPfam_Filament
NAA25	80018	genome.wustl.edu	37	12	112509855	112509855	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024953.3	-1	reviewed	p.E294*	1.000	45	0%	68	32.4%	3	0%	-	-	-	HMMPfam_NatB_MDM20,superfamily_TPR-like
C12orf51	283450	genome.wustl.edu	37	12	112686222	112686222	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.F927V	1.000	30	0%	46	28.3%	0	-	benign(0.002)	-	-	NULL
RASAL1	8437	genome.wustl.edu	37	12	113559336	113559336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004658.1	-1	reviewed	p.R136C	0.642	68	0%	157	38.9%	7	71.4%	benign(0.011)	tolerated(0.2)	neutral(0.050)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
IQCD	115811	genome.wustl.edu	37	12	113645265	113645265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138451.1	-1	provisional	p.R236K	0.000	63	0%	97	30.9%	12	66.6%	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
PLBD2	196463	genome.wustl.edu	37	12	113824749	113824749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173542.3	+1	validated	p.E432K	0.980	22	0%	40	37.5%	14	50%	benign(0.002)	tolerated(0.8)	neutral(0.001)	HMMPfam_Phospholip_B
TBX5	6910	genome.wustl.edu	37	12	114836450	114836450	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000192.3	-1	reviewed	p.A146	0.045	15	0%	25	20%	0	-	-	-	-	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2
MED13L	23389	genome.wustl.edu	37	12	116534502	116534502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.E151K	1.000	142	0%	152	28.9%	3	100%	possibly_damaging(0.65)	deleterious(0.05)	deleterious(0.574)	NULL
CCDC64	92558	genome.wustl.edu	37	12	120499525	120499525	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207311.2	+1	validated	p.V219	0.997	104	0%	172	41.9%	10	80%	-	-	-	NULL
PXN	5829	genome.wustl.edu	37	12	120660724	120660724	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080855.1	-1	validated	p.L145	0.924	11	0%	41	46.3%	9	55.5%	-	-	-	HMMPfam_Paxillin
COQ5	84274	genome.wustl.edu	37	12	120941426	120941426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302223	-1	known	p.F219L	0.000	14	0%	23	21.7%	96	47.9%	unknown(0)	tolerated(0.49)	-	NULL
KDM2B	84678	genome.wustl.edu	37	12	121970820	121970820	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032590.4	-1	reviewed	p.Y274	0.390	10	0%	25	44%	3	33.3%	-	-	-	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
TMEM120B	144404	genome.wustl.edu	37	12	122181540	122181540	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080825.2	+1	validated	p.T25	0.001	32	0%	63	30.2%	4	0%	-	-	-	HMMPfam_TMPIT
DNAH10	196385	genome.wustl.edu	37	12	124359937	124359937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.D2582Y	1.000	45	0%	99	10.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
POLE	5426	genome.wustl.edu	37	12	133250289	133250289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.V411L	1.000	120	0%	257	30.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
ZNF268	10795	genome.wustl.edu	37	12	133779075	133779075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003415.2	+1	validated	p.Q268R	0.000	65	0%	68	22.1%	0	-	benign(0)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
ENSG00000187721	0	genome.wustl.edu	37	13	19601067	19601067	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433887	-1	known	p.*68L	0.020	24	0%	23	34.8%	0	-	-	-	-	NULL
TPTE2	93492	genome.wustl.edu	37	13	19997250	19997250	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199254.2	-1	validated	p.K507N	0.889	159	0%	147	27.2%	0	-	benign(0.248)	deleterious(0.01)	neutral(0.431)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
IFT88	8100	genome.wustl.edu	37	13	21173633	21173633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175605.3	+1	reviewed	p.R256S	1.000	23	0%	31	35.5%	1	0%	possibly_damaging(0.607)	tolerated(0.14)	neutral(0.460)	HMMPfam_TPR_1,HMMSmart_SM00671,HMMSmart_SM00028,superfamily_TPR-like
SACS	26278	genome.wustl.edu	37	13	23912155	23912155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.D1954Y	1.000	96	0%	94	40.4%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
SACS	26278	genome.wustl.edu	37	13	23912323	23912323	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.E1898*	1.000	116	0%	108	27.8%	2	0%	-	-	-	NULL
NUPL1	9818	genome.wustl.edu	37	13	25883413	25883413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014089.3	+1	reviewed	p.L93F	1.000	45	0%	38	18.4%	1	100%	possibly_damaging(0.45)	tolerated(0.32)	neutral(0.171)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26273425	26273425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.E776K	1.000	96	0%	98	34.7%	0	-	benign(0.055)	tolerated(0.08)	neutral(0.303)	superfamily_HAD-like
GPR12	2835	genome.wustl.edu	37	13	27333417	27333417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005288.3	-1	validated	p.R183Q	0.001	31	0%	26	50%	0	-	benign(0.002)	tolerated(0.37)	neutral(0.019)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FRY	10129	genome.wustl.edu	37	13	32721489	32721489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.R417Q	1.000	66	0%	93	25.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FRY	10129	genome.wustl.edu	37	13	32783023	32783023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.N1351S	0.922	112	0%	128	31.2%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
FRY	10129	genome.wustl.edu	37	13	32821627	32821627	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.F2332	1.000	124	0%	118	24.6%	0	-	-	-	-	NULL
LHFP	10186	genome.wustl.edu	37	13	40175086	40175086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005780.2	-1	reviewed	p.G90S	1.000	116	0%	160	21.2%	5	0%	possibly_damaging(0.639)	tolerated(0.07)	deleterious(0.542)	HMMPfam_L_HGMIC_fpl
KIAA0564	23078	genome.wustl.edu	37	13	42385395	42385395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.L677F	1.000	179	0%	173	11%	2	0%	benign(0.118)	deleterious(0.03)	neutral(0.374)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC122	160857	genome.wustl.edu	37	13	44411474	44411474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144974.3	-1	validated	p.I255N	1.000	146	0%	161	12.4%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HTR2A	3356	genome.wustl.edu	37	13	47409732	47409732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000621.3	-1	reviewed	p.S219L	0.554	168	0%	155	13.5%	0	-	benign(0.208)	tolerated(0.19)	neutral(0.070)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HTR2A	3356	genome.wustl.edu	37	13	47469906	47469906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000621.3	-1	reviewed	p.T46A	1.000	194	0%	255	32.2%	0	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	superfamily_Family A G protein-coupled receptor-like
CAB39L	81617	genome.wustl.edu	37	13	49924940	49924940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079670.1	-1	validated	p.F168L	1.000	238	0%	253	27.7%	4	25%	possibly_damaging(0.523)	deleterious(0.03)	deleterious(0.541)	HMMPfam_Mo25,superfamily_ARM-type_fold
SPRYD7	57213	genome.wustl.edu	37	13	50495696	50495696	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020456.2	-1	validated	p.V137	1.000	83	0%	99	19.2%	26	73%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
KCNRG	283518	genome.wustl.edu	37	13	50589732	50589732	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173605.1	+1	validated	p.L35	0.923	228	0%	220	34.1%	2	100%	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
RNASEH2B	79621	genome.wustl.edu	37	13	51503712	51503712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024570.2	+1	reviewed	p.Q80K	1.000	77	0%	81	11.1%	35	20%	probably_damaging(0.999)	tolerated(0.35)	deleterious(0.511)	HMMPfam_RNase_H2-Ydr279
WDFY2	115825	genome.wustl.edu	37	13	52332385	52332385	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052950.3	+1	reviewed	p.F374	0.999	50	0%	82	23.2%	9	66.6%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
LOC341689	341689	genome.wustl.edu	37	13	59104453	59104453	+	RNA	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017487.3	+1	model	NULL	0.085	234	0%	215	20.5%	0	-	-	-	-	-
DIAPH3	81624	genome.wustl.edu	37	13	60384965	60384965	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042517.1	-1	validated	p.L1040	0.941	135	0%	164	32.3%	12	58.3%	-	-	-	HMMSmart_SM00498
DIAPH3	81624	genome.wustl.edu	37	13	60584769	60584769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042517.1	-1	validated	p.S269N	1.000	104	0%	65	33.8%	1	100%	probably_damaging(0.97)	deleterious(0.04)	deleterious(0.761)	HMMPfam_Drf_GBD
LOC121906	121906	genome.wustl.edu	37	13	98128099	98128099	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344083.1	+1	model	p.G120	1.000	61	0%	61	32.8%	0	-	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
IPO5	3843	genome.wustl.edu	37	13	98668014	98668014	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000469360	+1	known	p.S826L	0.964	125	0%	175	28.6%	116	43.1%	-	-	-	superfamily_ARM repeat
TM9SF2	9375	genome.wustl.edu	37	13	100169899	100169899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004800.1	+1	provisional	p.D68A	1.000	64	0%	70	37.1%	21	23.8%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
ERCC5	2073	genome.wustl.edu	37	13	103515335	103515335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000123.2	+1	reviewed	p.E612D	0.004	178	0%	170	39.4%	12	41.6%	benign(0.002)	tolerated(0.53)	neutral(0.007)	superfamily_PIN domain-like
SLC10A2	6555	genome.wustl.edu	37	13	103718243	103718243	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000452.2	-1	reviewed	p.V119	0.000	200	0.5%	206	27.7%	0	-	-	-	-	HMMPfam_SBF
COL4A2	1284	genome.wustl.edu	37	13	111102753	111102753	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.R431*	0.087	15	0%	33	30.3%	17	0%	-	-	-	HMMPfam_Collagen
ARHGEF7	8874	genome.wustl.edu	37	13	111857651	111857651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113511.1	+1	reviewed	p.D111N	1.000	49	0%	78	34.6%	1	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
PROZ	8858	genome.wustl.edu	37	13	113814465	113814465	+	Nonsense_Mutation	SNP	G	G	T	rs3024778	byCluster;byFrequency	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003891.1	+1	provisional	p.E70*	1.000	61	0%	102	46.1%	0	-	-	-	-	HMMPfam_Gla,HMMSmart_SM00069,PatternScan_GLA_1,superfamily_GLA-domain
ATP4B	496	genome.wustl.edu	37	13	114309194	114309194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000705.3	-1	reviewed	p.L59P	0.977	10	0%	34	17.6%	0	-	benign(0.173)	deleterious(0.01)	neutral(0.422)	HMMPfam_Na_K-ATPase
OR4Q3	441669	genome.wustl.edu	37	14	20215626	20215626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172194.1	+1	provisional	p.L14I	0.975	394	0.3%	330	32.7%	0	-	possibly_damaging(0.895)	deleterious(0.03)	deleterious(0.718)	superfamily_SSF81321
OR4M1	441670	genome.wustl.edu	37	14	20248736	20248736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005500.1	+1	provisional	p.F85L	0.995	557	0.2%	509	31.6%	0	-	benign(0.17)	tolerated(1)	neutral(0.015)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4K13	390433	genome.wustl.edu	37	14	20502032	20502032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004714.1	-1	provisional	p.A296T	0.001	104	0%	82	29.3%	0	-	benign(0.002)	tolerated(0.6)	neutral(0.004)	superfamily_SSF81321
OR4K17	390436	genome.wustl.edu	37	14	20586408	20586408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004715.1	+1	provisional	p.F281L	0.921	246	0%	207	35.7%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6S1	341799	genome.wustl.edu	37	14	21108984	21108984	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001968.1	-1	provisional	p.N289	1.000	219	0%	364	10.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CMTM5	116173	genome.wustl.edu	37	14	23846538	23846538	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138460.2	+1	reviewed	p.D26E	1.000	18	0%	31	32.3%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
MYH7	4625	genome.wustl.edu	37	14	23900677	23900677	+	Missense_Mutation	SNP	C	C	T	rs3218713	byCluster	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.R249Q	1.000	117	0%	265	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
RNF31	55072	genome.wustl.edu	37	14	24620710	24620710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017999.4	+1	validated	p.S585F	0.032	20	0%	45	37.8%	34	47%	possibly_damaging(0.508)	deleterious(0.01)	deleterious(0.576)	NULL
IPO4	79711	genome.wustl.edu	37	14	24651346	24651346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024658.3	-1	validated	p.E874D	1.000	14	0%	38	18.4%	85	54.1%	benign(0.031)	tolerated(0.31)	neutral(0.029)	superfamily_ARM repeat
C14orf21	161424	genome.wustl.edu	37	14	24771468	24771468	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174913.1	+1	provisional	p.T327	0.129	174	0%	233	30%	2	50%	-	-	-	HMMPfam_PUF,HMMSmart_Pumilio,superfamily_ARM-type_fold
G2E3	55632	genome.wustl.edu	37	14	31074996	31074996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017769.3	+1	validated	p.K432N	1.000	102	0%	92	32.6%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,superfamily_HECT
HECTD1	25831	genome.wustl.edu	37	14	31613289	31613289	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000261312	-1	known	p.K936Q	0.002	32	0%	55	32.7%	0	-	benign(0.067)	deleterious(0.03)	neutral(0.369)	NULL
HECTD1	25831	genome.wustl.edu	37	14	31637506	31637506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.I540M	1.000	219	0%	266	35%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	superfamily_ARM repeat
AKAP6	9472	genome.wustl.edu	37	14	33015867	33015867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.E670K	1.000	232	0%	225	35.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35295280	35295280	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013448.2	-1	validated	p.E159*	1.000	63	0%	88	37.5%	0	-	-	-	-	NULL
KIAA0391	9692	genome.wustl.edu	37	14	35736002	35736002	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014672.2	+1	provisional	p.L449	0.992	130	0%	187	30.5%	56	37.5%	-	-	-	NULL
KLHL28	54813	genome.wustl.edu	37	14	45414302	45414302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017658.3	-1	validated	p.R277Q	1.000	186	0%	197	34%	1	100%	benign(0.017)	tolerated(0.1)	neutral(0.287)	superfamily_Galactose oxidase central domain
MGAT2	4247	genome.wustl.edu	37	14	50088956	50088957	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002408.3	+1	reviewed	p.R325fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_MGAT2,superfamily_Nucleotide-diphospho-sugar transferases
SOS2	6655	genome.wustl.edu	37	14	50649313	50649313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006939.2	-1	validated	p.K242N	1.000	65	0%	111	30.6%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
TMX1	81542	genome.wustl.edu	37	14	51713891	51713891	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030755.4	+1	validated	p.W132*	1.000	167	0%	174	39.7%	10	10%	-	-	-	superfamily_Thioredoxin-like
NID2	22795	genome.wustl.edu	37	14	52520978	52520978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.D277N	1.000	82	0%	89	31.5%	0	-	benign(0.251)	tolerated(0.35)	neutral(0.046)	NULL
SAMD4A	23034	genome.wustl.edu	37	14	55169136	55169136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015589.4	+1	validated	p.D184Y	1.000	94	0%	110	39.1%	1	0%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
KTN1	3895	genome.wustl.edu	37	14	56119646	56119646	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079521.1	+1	validated	p.G894	0.639	177	0%	141	31.9%	98	48.9%	-	-	-	NULL
C14orf101	54916	genome.wustl.edu	37	14	57114036	57114036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017799.3	+1	validated	p.R649W	1.000	93	0%	98	23.5%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JKAMP	51528	genome.wustl.edu	37	14	59951259	59951259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442454	+1	known	p.A6S	0.000	6	0.000	6	0.667	1	100%	-	-	-	NULL
C14orf135	64430	genome.wustl.edu	37	14	60574495	60574495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000404681	+1	known	p.L47I	1.000	98	0%	79	17.7%	1	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
SYT16	83851	genome.wustl.edu	37	14	62536447	62536447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031914.2	+1	validated	p.K217R	0.999	319	0%	364	28.8%	2	0%	benign(0.022)	deleterious(0)	neutral(0.446)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63453860	63453860	+	Missense_Mutation	SNP	C	C	T	rs148002630		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139318.3	-1	reviewed	p.R160Q	1.000	206	0%	164	28%	0	-	benign(0.138)	deleterious(0.02)	neutral(0.395)	NULL
SYNE2	23224	genome.wustl.edu	37	14	64540714	64540714	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.E3576*	0.996	274	0%	298	31.2%	0	-	-	-	-	NULL
FUT8	2530	genome.wustl.edu	37	14	66028359	66028359	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178154.1	+1	reviewed	p.G26	1.000	293	0%	199	28.6%	2	50%	-	-	-	NULL
GPHN	10243	genome.wustl.edu	37	14	67567593	67567593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020806.4	+1	reviewed	p.R420C	1.000	57	0%	48	33.3%	2	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_MoeA_N,superfamily_MoeA_N
ZFYVE26	23503	genome.wustl.edu	37	14	68244886	68244886	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.L1585R	1.000	199	0%	232	27.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1
RGS6	9628	genome.wustl.edu	37	14	72926360	72926360	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004296.4	+1	validated	p.S121	0.000	37	0%	60	15%	1	100%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
DPF3	8110	genome.wustl.edu	37	14	73181152	73181152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012074.3	-1	provisional	p.D195N	0.998	80	0%	154	29.9%	0	-	possibly_damaging(0.838)	deleterious(0.03)	deleterious(0.684)	superfamily_SSF57667
MLH3	27030	genome.wustl.edu	37	14	75513424	75513424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040108.1	-1	reviewed	p.V979F	0.000	204	0%	252	34.1%	7	71.4%	unknown(0)	deleterious(0.03)	-	NULL
MLH3	27030	genome.wustl.edu	37	14	75514328	75514328	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040108.1	-1	reviewed	p.T677	0.004	128	0%	175	29.7%	1	100%	-	-	-	NULL
C14orf1	11161	genome.wustl.edu	37	14	76123750	76123750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007176.2	-1	validated	p.F32L	0.804	107	0%	133	34.6%	71	53.5%	probably_damaging(0.996)	tolerated(0.32)	deleterious(0.486)	HMMPfam_Erg28
C14orf118	55668	genome.wustl.edu	37	14	76620831	76620831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017926.2	+1	validated	p.R42H	1.000	72	1.4%	58	44.8%	2	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZDHHC22	283576	genome.wustl.edu	37	14	77600273	77600273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174976.2	-1	validated	p.E182A	1.000	6	0.000	14	0.286	0	-	benign(0.055)	tolerated(0.08)	neutral(0.303)	NULL
POMT2	29954	genome.wustl.edu	37	14	77765877	77765877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013382.5	-1	reviewed	p.R282C	1.000	56	0%	113	38.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMT
SLIRP	81892	genome.wustl.edu	37	14	78177192	78177192	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031210.4	+1	validated	p.E37*	1.000	145	0%	235	18.3%	294	6.8%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
NRXN3	9369	genome.wustl.edu	37	14	79434674	79434674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004796.4	+1	reviewed	p.E670K	1.000	103	0%	78	30.8%	0	-	benign(0.292)	tolerated(0.37)	neutral(0.109)	superfamily_ConA_like_lec_gl
C14orf159	80017	genome.wustl.edu	37	14	91662798	91662798	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102368.1	+1	validated	p.N425	0.151	25	0%	75	32%	62	43.5%	-	-	-	NULL
TC2N	123036	genome.wustl.edu	37	14	92251541	92251541	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128595.1	-1	validated	p.R443*	1.000	367	0%	337	40.9%	23	26%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TC2N	123036	genome.wustl.edu	37	14	92258712	92258712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128595.1	-1	validated	p.S349F	1.000	205	0%	211	28.9%	17	35.2%	possibly_damaging(0.819)	tolerated(0.05)	deleterious(0.655)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TRIP11	9321	genome.wustl.edu	37	14	92480758	92480758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004239.3	-1	reviewed	p.R329S	0.173	130	0%	167	32.3%	1	0%	benign(0.304)	tolerated(0.15)	neutral(0.336)	NULL
UBR7	55148	genome.wustl.edu	37	14	93685647	93685647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175748.3	+1	validated	p.D300E	0.987	62	0%	78	30.8%	24	29.1%	possibly_damaging(0.895)	tolerated(0.37)	neutral(0.372)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93709114	93709114	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.S968	0.024	86	0%	128	27.3%	0	-	-	-	-	NULL
SERPINA10	51156	genome.wustl.edu	37	14	94756345	94756345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100607.1	-1	reviewed	p.R196C	0.006	116	0%	132	28%	0	-	possibly_damaging(0.866)	deleterious(0.04)	deleterious(0.684)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
TCL1A	8115	genome.wustl.edu	37	14	96178581	96178581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098725.1	-1	validated	p.F91L	0.865	144	0%	215	26%	0	-	probably_damaging(0.974)	tolerated(0.78)	neutral(0.417)	HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1
ATG2B	55102	genome.wustl.edu	37	14	96784131	96784131	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018036.5	-1	validated	p.N981H	1.000	232	0%	214	28%	0	-	possibly_damaging(0.746)	tolerated(0.2)	neutral(0.323)	NULL
EIF5	1983	genome.wustl.edu	37	14	103805657	103805657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001969.3	+1	validated	p.R298H	1.000	114	0%	125	30.4%	66	36.3%	benign(0.335)	tolerated(0.14)	neutral(0.355)	HMMSmart_SM00515,superfamily_ARM repeat
AHNAK2	113146	genome.wustl.edu	37	14	105412333	105412333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.S3152L	0.029	26	0%	56	58.9%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
IGHV1-24	28467	genome.wustl.edu	37	14	106733326	106733326	+	Nonsense_Mutation	SNP	G	G	A	rs146235389	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390610	-1	known	p.R57*	0.899	394	0%	534	31.8%	3	0%	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
OR4M2	390538	genome.wustl.edu	37	15	22369034	22369034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004719.2	+1	validated	p.F153L	0.021	1592	0%	1294	13.1%	0	-	possibly_damaging(0.523)	tolerated(0.19)	neutral(0.226)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4N4	283694	genome.wustl.edu	37	15	22383122	22383122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005241.1	+1	provisional	p.S217Y	0.983	452	0%	478	12.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR4N4	283694	genome.wustl.edu	37	15	22383340	22383340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005241.1	+1	provisional	p.R290C	0.642	278	0%	339	10.9%	0	-	benign(0.233)	deleterious(0.01)	neutral(0.429)	superfamily_SSF81321
NIPA2	81614	genome.wustl.edu	37	15	23012432	23012432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008860.2	-1	reviewed	p.L99I	1.000	172	0%	272	21%	19	10.5%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE
MAGEL2	54551	genome.wustl.edu	37	15	23889356	23889356	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019066.4	-1	reviewed	p.A575	0.002	26	0%	39	28.2%	0	-	-	-	-	HMMPfam_MAGE
ATP10A	57194	genome.wustl.edu	37	15	25932878	25932878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.M1088T	1.000	107	0%	203	33.5%	1	0%	benign(0.009)	deleterious(0.03)	neutral(0.365)	NULL
GABRA5	2558	genome.wustl.edu	37	15	27126074	27126074	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000810.3	+1	reviewed	p.L56	0.082	26	0%	54	31.5%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HERC2	8924	genome.wustl.edu	37	15	28467335	28467335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.D1831Y	0.997	57	0%	98	9.2%	1	0%	possibly_damaging(0.91)	deleterious(0.03)	deleterious(0.727)	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28886686	28886686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382946	+1	known	p.R472Q	1.000	388	0%	516	17.1%	1	0%	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34042194	34042194	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.V2738	0.136	47	0%	56	25%	0	-	-	-	-	HMMPfam_RyR
C15orf24	56851	genome.wustl.edu	37	15	34376669	34376669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020154.2	-1	validated	p.N199H	1.000	171	0%	220	30.5%	161	37.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DUF2012
PGBD4	161779	genome.wustl.edu	37	15	34395157	34395157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152595.4	+1	validated	p.S142L	0.354	92	0%	98	30.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC12A6	9990	genome.wustl.edu	37	15	34553131	34553131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133647.1	-1	reviewed	p.F136S	1.000	101	0%	157	31.8%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
AQR	9716	genome.wustl.edu	37	15	35174815	35174815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.R1018Q	1.000	153	0%	128	32%	17	41.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52540
FSIP1	161835	genome.wustl.edu	37	15	39893089	39893089	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152597.4	-1	validated	p.E580*	0.544	136	0%	123	37.4%	0	-	-	-	-	NULL
BUB1B	701	genome.wustl.edu	37	15	40502378	40502378	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001211.5	+1	reviewed	p.A784	0.044	100	0%	147	31.3%	23	34.7%	-	-	-	superfamily_Protein kinase-like (PK-like)
FAM82A2	55177	genome.wustl.edu	37	15	41029328	41029328	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018145.1	-1	provisional	p.T451	0.956	166	0%	299	30.4%	54	38.8%	-	-	-	superfamily_TPR-like
SPINT1	6692	genome.wustl.edu	37	15	41148248	41148248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181642.2	+1	reviewed	p.R442C	0.001	28	0%	56	26.8%	431	49.6%	possibly_damaging(0.804)	deleterious(0.02)	deleterious(0.685)	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,superfamily_BPTI-like
RHOV	171177	genome.wustl.edu	37	15	41555061	41555061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007236.4	+1	reviewed	p.S110N	1.000	153	0%	210	32.9%	47	48.9%	benign(0.015)	tolerated(0.14)	neutral(0.250)	superfamily_EF-hand
MGA	23269	genome.wustl.edu	37	15	41999948	41999948	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.V737	1.000	65	0%	77	33.8%	0	-	-	-	-	NULL
GANC	2595	genome.wustl.edu	37	15	42630604	42630604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198141.2	+1	reviewed	p.D587N	1.000	201	0%	203	16.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
ZFP106	64397	genome.wustl.edu	37	15	42714724	42714724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022473.1	-1	provisional	p.K1760T	1.000	123	0%	180	33.3%	6	50%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMSmart_WD40,superfamily_WD40_like,HMMSmart_PQQ,HMMPfam_WD40
TGM7	116179	genome.wustl.edu	37	15	43585075	43585075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052955.2	-1	validated	p.A91T	0.999	39	0%	58	43.1%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Transglut_N,superfamily_Ig_E-set
TP53BP1	7158	genome.wustl.edu	37	15	43784215	43784215	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141980.1	-1	validated	p.E91*	1.000	222	0%	318	29.6%	1	0%	-	-	-	NULL
MAP1A	4130	genome.wustl.edu	37	15	43818847	43818847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002373.5	+1	reviewed	p.E1726K	1.000	40	0%	98	29.6%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
SPATA5L1	79029	genome.wustl.edu	37	15	45707792	45707792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024063.2	+1	validated	p.R551Q	0.997	111	0%	124	32.3%	18	61.1%	benign(0.008)	tolerated(0.15)	neutral(0.241)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SHC4	399694	genome.wustl.edu	37	15	49118203	49118203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203349.3	-1	validated	p.D620Y	0.919	322	0%	349	28.7%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_SH2 domain
FGF7	2252	genome.wustl.edu	37	15	49716625	49716625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002009.3	+1	reviewed	p.V44A	1.000	236	0%	190	31.6%	1	0%	possibly_damaging(0.882)	tolerated(0.37)	neutral(0.363)	NULL
FGF7	2252	genome.wustl.edu	37	15	49776510	49776510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002009.3	+1	reviewed	p.E132K	1.000	124	0%	105	15.2%	0	-	benign(0.011)	tolerated(0.65)	neutral(0.004)	HMMPfam_FGF,HMMSmart_SM00442,PatternScan_HBGF_FGF,superfamily_Cytokine
DTWD1	56986	genome.wustl.edu	37	15	49926772	49926772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144955.1	+1	validated	p.K150E	0.996	274	0%	282	18.8%	31	12.9%	benign(0)	tolerated(0.97)	-	HMMPfam_DTW
TNFAIP8L3	388121	genome.wustl.edu	37	15	51350092	51350092	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207381.2	-1	provisional	p.E289*	1.000	99	0%	124	25.8%	2	50%	-	-	-	HMMPfam_DUF758
PIGB	9488	genome.wustl.edu	37	15	55643036	55643036	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004855.4	+1	reviewed	p.V421	0.295	154	0%	164	35.4%	5	40%	-	-	-	HMMPfam_Glyco_transf_22
PYGO1	26108	genome.wustl.edu	37	15	55841157	55841157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015617.1	-1	provisional	p.G29D	1.000	229	0.4%	226	34.1%	1	100%	benign(0.388)	deleterious(0.03)	deleterious(0.488)	NULL
RFX7	64864	genome.wustl.edu	37	15	56387541	56387541	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022841.5	-1	validated	p.S795	0.966	252	0%	184	35.9%	0	-	-	-	-	NULL
CGNL1	84952	genome.wustl.edu	37	15	57731216	57731216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032866.3	+1	validated	p.G340E	1.000	142	0%	127	29.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GCOM1	145781	genome.wustl.edu	37	15	57896505	57896505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018090.1	+1	reviewed	p.E38D	0.095	122	0%	142	16.9%	1	0%	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
CCNB2	9133	genome.wustl.edu	37	15	59408985	59408985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004701.2	+1	reviewed	p.D232Y	1.000	255	0%	269	30.9%	107	42.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
NARG2	79664	genome.wustl.edu	37	15	60748862	60748862	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024611.4	-1	validated	p.L220	0.323	102	0%	99	28.3%	3	100%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62270920	62270920	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.K732T	0.435	189	0%	170	34.7%	0	-	benign(0.03)	tolerated(0.08)	neutral(0.301)	NULL
LOC100289289	100289289	genome.wustl.edu	37	15	62546496	62546496	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343368.1	-1	model	p.N762H	1.000	19	0%	21	33.3%	0	-	-	-	-	NULL
RAB8B	51762	genome.wustl.edu	37	15	63548721	63548721	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016530.2	+1	validated	p.V114	1.000	90	0%	82	29.3%	3	0%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100130855	100130855	genome.wustl.edu	37	15	63848988	63848988	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078495.1	-1	model	NULL	0.000	18	0%	35	22.9%	0	-	-	-	-	-
DENND4A	10260	genome.wustl.edu	37	15	65964167	65964167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144823.1	-1	validated	p.A1475V	0.970	116	0%	117	31.6%	1	100%	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
AAGAB	79719	genome.wustl.edu	37	15	67495183	67495183	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024666.3	-1	validated	p.G308	1.000	120	0%	126	15.9%	39	28.2%	-	-	-	NULL
MYO9A	4649	genome.wustl.edu	37	15	72324929	72324929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.A281T	1.000	111	0%	111	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADPGK	83440	genome.wustl.edu	37	15	73044839	73044839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031284.4	-1	validated	p.L445S	0.203	130	0%	108	33.3%	19	42.1%	possibly_damaging(0.433)	deleterious(0.04)	deleterious(0.490)	HMMPfam_ADP_PFK_GK,superfamily_SSF53613
ENSG00000233166	0	genome.wustl.edu	37	15	75594985	75594985	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454231	-1	known	p.A12	0.974	29	0%	49	34.7%	0	-	-	-	-	NULL
CSPG4	1464	genome.wustl.edu	37	15	75968105	75968105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001897.4	-1	reviewed	p.T2252M	0.990	8	0.000	52	0.308	10	10%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ETFA	2108	genome.wustl.edu	37	15	76508916	76508916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000126.3	-1	reviewed	p.I329T	0.227	34	0%	54	25.9%	142	47.8%	benign(0)	tolerated(0.28)	neutral(0.032)	superfamily_DHS-like NAD/FAD-binding domain
SGK269	79834	genome.wustl.edu	37	15	77471399	77471399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024776.2	-1	validated	p.G957D	1.000	144	0%	152	32.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81212487	81212487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018689.1	+1	validated	p.D617A	1.000	49	0%	102	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC647020	647020	genome.wustl.edu	37	15	81410530	81410530	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719614.2	-1	model	p.F89C	1.000	36	0%	84	26.2%	0	-	-	-	-	superfamily_L domain-like
BNC1	646	genome.wustl.edu	37	15	83933080	83933080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001717.3	-1	reviewed	p.P308L	0.979	110	0%	78	35.9%	0	-	probably_damaging(0.974)	tolerated(1)	neutral(0.416)	NULL
ZNF592	9640	genome.wustl.edu	37	15	85341672	85341672	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014630.2	+1	validated	p.F901	1.000	29	0%	62	25.8%	17	58.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
AKAP13	11214	genome.wustl.edu	37	15	86205640	86205640	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.G1589	1.000	166	0%	171	29.8%	1	0%	-	-	-	NULL
IQGAP1	8826	genome.wustl.edu	37	15	91016190	91016190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.R766Q	0.964	126	0%	169	14.8%	7	28.5%	benign(0.003)	tolerated(0.61)	neutral(0.004)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
CRTC3	64784	genome.wustl.edu	37	15	91184374	91184374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022769.3	+1	validated	p.H532N	0.040	17	0%	17	23.5%	2	0%	possibly_damaging(0.891)	tolerated(0.35)	neutral(0.371)	NULL
BLM	641	genome.wustl.edu	37	15	91292703	91292703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000057.2	+1	reviewed	p.E69K	0.000	194	0%	201	29.4%	0	-	probably_damaging(0.99)	tolerated(0.52)	neutral(0.450)	NULL
SV2B	9899	genome.wustl.edu	37	15	91795664	91795664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014848.4	+1	validated	p.G233E	1.000	52	0%	57	22.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLCO3A1	28232	genome.wustl.edu	37	15	92669338	92669338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013272.3	+1	validated	p.L408I	0.993	102	0%	131	29%	9	44.4%	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	HMMPfam_OATP,superfamily_MFS general substrate transporter
CHD2	1106	genome.wustl.edu	37	15	93467575	93467575	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001271.3	+1	reviewed	p.S29	0.848	258	0.4%	337	33.8%	3	66.6%	-	-	-	NULL
NR2F2	7026	genome.wustl.edu	37	15	96877406	96877406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021005.3	+1	reviewed	p.I182L	1.000	26	0%	45	46.7%	24	29.1%	possibly_damaging(0.887)	tolerated(0.09)	deleterious(0.643)	superfamily_Nuclear receptor ligand-binding domain,HMMPfam_zf-C4_C
ADAMTS17	170691	genome.wustl.edu	37	15	100514743	100514743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139057.2	-1	reviewed	p.R1051Q	1.000	20	0%	37	24.3%	1	0%	benign(0.061)	tolerated(0.15)	neutral(0.245)	HMMPfam_PLAC
SRRM2	23524	genome.wustl.edu	37	16	2814932	2814932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.D1468A	0.814	221	0%	623	30.8%	22	54.5%	unknown(0)	-	-	NULL
OR2C1	4993	genome.wustl.edu	37	16	3405993	3405993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012368.2	+1	validated	p.S18L	0.983	123	0%	210	33.8%	0	-	possibly_damaging(0.793)	deleterious(0)	deleterious(0.742)	superfamily_Family A G protein-coupled receptor-like
ADCY9	115	genome.wustl.edu	37	16	4164273	4164273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001116.2	-1	reviewed	p.E391K	1.000	36	0%	32	15.6%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
NMRAL1	57407	genome.wustl.edu	37	16	4511942	4511942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020677.3	-1	provisional	p.E247K	1.000	18	0%	45	31.1%	256	40.6%	benign(0.251)	tolerated(0.52)	neutral(0.034)	superfamily_NAD(P)-bd
GRIN2A	2903	genome.wustl.edu	37	16	9858336	9858336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.R1022H	1.000	167	0%	174	40.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NMDAR2_C
GRIN2A	2903	genome.wustl.edu	37	16	9892164	9892164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.D776N	1.000	45	0%	63	22.2%	0	-	probably_damaging(0.953)	tolerated(0.3)	neutral(0.425)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIN2A	2903	genome.wustl.edu	37	16	10031828	10031828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.H332R	1.000	78	0%	87	29.9%	0	-	benign(0.038)	tolerated(0.49)	neutral(0.013)	superfamily_Periplasmic binding protein-like I
EMP2	2013	genome.wustl.edu	37	16	10626882	10626882	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001424.4	-1	validated	p.A128	0.000	51	0%	78	34.6%	217	39.6%	-	-	-	HMMPfam_PMP22_Claudin
KIAA0430	9665	genome.wustl.edu	37	16	15710962	15710962	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.A1008	0.128	200	0%	354	33.9%	0	-	-	-	-	NULL
XYLT1	64131	genome.wustl.edu	37	16	17353332	17353332	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022166.3	-1	reviewed	p.P142	0.043	131	0%	150	28.7%	0	-	-	-	-	NULL
ACSM2A	123876	genome.wustl.edu	37	16	20480978	20480978	+	Missense_Mutation	SNP	G	G	T	rs185396407	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010845.2	+1	validated	p.R178I	0.963	554	0%	627	30%	0	-	possibly_damaging(0.78)	deleterious(0.02)	deleterious(0.674)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM1	116285	genome.wustl.edu	37	16	20693784	20693784	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052956.2	-1	validated	p.G135	0.054	122	0%	162	32.1%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DNAH3	55567	genome.wustl.edu	37	16	20994085	20994085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.K2606T	0.999	33	0%	59	30.5%	0	-	benign(0.019)	tolerated(0.17)	neutral(0.060)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21093012	21093012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.E972K	0.984	187	0%	212	35.8%	0	-	benign(0.004)	tolerated(0.85)	neutral(0.001)	HMMPfam_DHC_N2
UQCRC2	7385	genome.wustl.edu	37	16	21994410	21994410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003366.2	+1	validated	p.A427V	1.000	81	0%	80	13.8%	463	24.8%	benign(0.13)	tolerated(0.76)	neutral(0.012)	superfamily_LuxS/MPP-like metallohydrolase
SCNN1G	6340	genome.wustl.edu	37	16	23208689	23208689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039.3	+1	reviewed	p.V340I	0.998	73	0%	84	35.7%	7	28.5%	benign(0)	tolerated(1)	-	HMMPfam_ASC
PALB2	79728	genome.wustl.edu	37	16	23640560	23640560	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024675.3	-1	reviewed	p.N851H	0.004	73	0%	131	27.5%	6	50%	benign(0.006)	tolerated(0.28)	neutral(0.032)	superfamily_WD40_like
XPO6	23214	genome.wustl.edu	37	16	28123225	28123225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015171.2	-1	provisional	p.A752T	0.900	31	0%	36	36.1%	24	33.3%	benign(0)	tolerated(0.61)	neutral(0.004)	superfamily_ARM repeat
APOBR	55911	genome.wustl.edu	37	16	28508359	28508359	+	Missense_Mutation	SNP	G	G	A	rs143668661	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018690.2	+1	reviewed	p.R657Q	0.000	8	0.000	36	0.472	5	80%	benign(0.051)	tolerated(0.64)	neutral(0.006)	NULL
FBRS	64319	genome.wustl.edu	37	16	30679892	30679892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105079.1	+1	validated	p.R176C	1.000	24	0%	16	25%	31	45.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRCAP	10847	genome.wustl.edu	37	16	30718621	30718621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.E142K	1.000	31	0%	78	10.3%	2	50%	unknown(0)	-	-	HMMPfam_HSA,HMMSmart_SM00573
PRSS8	5652	genome.wustl.edu	37	16	31143491	31143491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002773.3	-1	reviewed	p.R291C	0.001	5	0.000	38	0.158	658	14.4%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
MYLK3	91807	genome.wustl.edu	37	16	46761267	46761267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182493.2	-1	validated	p.D599N	1.000	34	0%	66	30.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ABCC12	94160	genome.wustl.edu	37	16	48138169	48138169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033226.2	-1	reviewed	p.E928D	1.000	67	0%	108	30.6%	0	-	possibly_damaging(0.948)	tolerated(0.1)	deleterious(0.677)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
PAPD5	64282	genome.wustl.edu	37	16	50245299	50245299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040284.2	+1	validated	p.R11Q	1.000	76	0%	67	26.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotidyltransferase
CYLD	1540	genome.wustl.edu	37	16	50788285	50788285	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015247.2	+1	reviewed	p.F288C	1.000	74	0%	74	40.5%	5	20%	benign(0.345)	deleterious(0)	deleterious(0.553)	HMMPfam_CAP_GLY,superfamily_Cap-Gly domain
FTO	79068	genome.wustl.edu	37	16	54145785	54145785	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080432.2	+1	reviewed	p.I492	0.035	201	0%	304	28.3%	3	0%	-	-	-	NULL
GPR97	222487	genome.wustl.edu	37	16	57719645	57719645	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170776.4	+1	validated	p.V449	0.873	36	0%	86	29.1%	0	-	-	-	-	HMMPfam_7tm_2
SETD6	79918	genome.wustl.edu	37	16	58552344	58552344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024860.2	+1	validated	p.R314H	1.000	38	0%	22	40.9%	32	50%	probably_damaging(0.983)	tolerated(0.18)	deleterious(0.485)	superfamily_RuBisCo LSMT C-terminal substrate-binding domain
CNOT1	23019	genome.wustl.edu	37	16	58577366	58577366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206999.1	-1	validated	p.D1527Y	0.000	49	0%	53	26.4%	5	0%	benign(0)	-	-	NULL
CTCF	10664	genome.wustl.edu	37	16	67655479	67655479	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.R448*	1.000	87	0%	191	30.4%	5	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GFOD2	81577	genome.wustl.edu	37	16	67709476	67709476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030819.3	-1	validated	p.F247S	1.000	30	0%	69	39.1%	15	53.3%	possibly_damaging(0.529)	tolerated(0.15)	neutral(0.419)	HMMPfam_GFO_IDH_MocA_C,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain
EDC4	23644	genome.wustl.edu	37	16	67916940	67916940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014329.3	+1	validated	p.A1237T	0.724	8	0.000	25	0.320	146	48.6%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
ZFP90	146198	genome.wustl.edu	37	16	68597759	68597759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133458.2	+1	provisional	p.E357K	1.000	135	0%	179	20.7%	3	0%	benign(0.048)	tolerated(0.09)	neutral(0.299)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP90	146198	genome.wustl.edu	37	16	68598588	68598588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133458.2	+1	provisional	p.R633Q	1.000	156	0%	168	32.7%	2	50%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	superfamily_C2H2 and C2HC zinc fingers
HP	3240	genome.wustl.edu	37	16	72094270	72094270	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005143.3	+1	reviewed	p.E234	1.000	83	0%	153	31.4%	552	46.3%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ZFHX3	463	genome.wustl.edu	37	16	72822233	72822233	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.G3314	1.000	57	0%	52	30.8%	13	7.6%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72845838	72845838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.R1210Q	1.000	225	0%	249	29.3%	0	-	unknown(0)	-	-	NULL
FA2H	79152	genome.wustl.edu	37	16	74752910	74752910	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024306.4	-1	reviewed	p.F254	0.885	34	0%	85	21.2%	12	50%	-	-	-	HMMPfam_FA_hydroxylase
WDR59	79726	genome.wustl.edu	37	16	74908203	74908203	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030581.3	-1	validated	p.H943	0.987	25	0%	28	39.3%	33	33.3%	-	-	-	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76532582	76532582	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138994.3	+1	validated	p.Q713*	0.414	104	1%	114	31.6%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
ATMIN	23300	genome.wustl.edu	37	16	81076021	81076021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015251.2	+1	validated	p.A200T	1.000	97	0%	102	30.4%	4	25%	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	HMMSmart_SM00355
PLCG2	5336	genome.wustl.edu	37	16	81954809	81954809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002661.2	+1	validated	p.D748Y	1.000	92	0%	115	33.9%	9	33.3%	possibly_damaging(0.482)	deleterious(0)	deleterious(0.605)	superfamily_SH3,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
MLYCD	23417	genome.wustl.edu	37	16	83945881	83945881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012213.2	+1	reviewed	p.A286V	1.000	27	0%	48	25%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MCD
DNAAF1	123872	genome.wustl.edu	37	16	84205874	84205874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178452.4	+1	reviewed	p.P513S	0.000	15	0%	33	27.3%	8	75%	benign(0.135)	tolerated(0.77)	neutral(0.013)	NULL
FOXL1	2300	genome.wustl.edu	37	16	86612649	86612649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005250.2	+1	validated	p.F107S	1.000	19	0%	43	27.9%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
ZNF778	197320	genome.wustl.edu	37	16	89294417	89294417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182531.2	+1	validated	p.S546L	0.000	110	0%	250	34.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SMG6	23293	genome.wustl.edu	37	17	1972142	1972142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017575.4	-1	validated	p.F1255L	1.000	7	0.000	22	0.318	24	50%	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	HMMSmart_SM00670,superfamily_PIN domain-like
CTNS	1497	genome.wustl.edu	37	17	3563924	3563924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031681.2	+1	reviewed	p.R367C	0.237	10	0.000	9	0.444	11	27.2%	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
ZMYND15	84225	genome.wustl.edu	37	17	4645733	4645733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136046.1	+1	provisional	p.A364V	1.000	35	0%	105	33.3%	0	-	benign(0.15)	tolerated(0.08)	neutral(0.313)	NULL
ZNF232	7775	genome.wustl.edu	37	17	5009459	5009459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014519.2	-1	validated	p.K332T	0.000	73	0%	139	36%	21	28.5%	unknown(0)	tolerated(0.18)	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF594	84622	genome.wustl.edu	37	17	5087196	5087196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032530.1	-1	validated	p.K119T	0.646	131	0%	182	37.4%	1	0%	possibly_damaging(0.911)	tolerated(0.2)	neutral(0.412)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
NLRP1	22861	genome.wustl.edu	37	17	5462355	5462355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033004.3	-1	reviewed	p.Y554C	0.000	106	0%	148	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PITPNM3	83394	genome.wustl.edu	37	17	6364709	6364709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031220.3	-1	reviewed	p.R825H	1.000	20	0%	46	37%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like
KIAA0753	9851	genome.wustl.edu	37	17	6493947	6493947	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014804.2	-1	validated	p.Q815P	0.035	78	0%	101	33.7%	9	0%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
TMEM95	339168	genome.wustl.edu	37	17	7259722	7259722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198154.1	+1	provisional	p.L149I	1.000	73	0%	191	22%	0	-	possibly_damaging(0.722)	-	-	NULL
CD68	968	genome.wustl.edu	37	17	7483303	7483303	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001251.2	+1	reviewed	p.T75	0.000	42	0%	84	25%	10	20%	-	-	-	HMMPfam_Lamp
DNAH2	146754	genome.wustl.edu	37	17	7674139	7674139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.R1417H	0.871	98	1%	216	28.2%	2	50%	benign(0.053)	tolerated(0.13)	neutral(0.256)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7674666	7674666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.D1461Y	1.000	65	0%	110	37.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7705015	7705015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.G2940E	0.991	74	0%	149	38.3%	0	-	possibly_damaging(0.852)	tolerated(0.19)	neutral(0.377)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD3	1107	genome.wustl.edu	37	17	7813831	7813831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439235	+1	known	p.R236C	1.000	44	0%	80	37.5%	176	46%	unknown(0)	deleterious(0.01)	-	HMMPfam_CHDCT2
ALOX15B	247	genome.wustl.edu	37	17	7950374	7950374	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141.2	+1	reviewed	p.Q479	0.468	35	0%	89	41.6%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxigenase
MYH1	4619	genome.wustl.edu	37	17	10399439	10399439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.R1666Q	1.000	201	0%	175	32%	0	-	benign(0.017)	tolerated(0.06)	neutral(0.323)	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10400422	10400422	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.E1540D	0.998	155	0%	135	37.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10411797	10411797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.A594S	0.000	71	0%	84	36.9%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
TEKT3	64518	genome.wustl.edu	37	17	15231385	15231385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031898.2	-1	reviewed	p.R196Q	1.000	267	0%	318	13.5%	1	0%	benign(0.003)	tolerated(0.43)	neutral(0.013)	HMMPfam_Tektin
CCDC144A	9720	genome.wustl.edu	37	17	16608558	16608558	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014695.1	+1	provisional	p.S170*	0.028	424	0%	508	19.5%	0	-	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18067133	18067133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418233	+1	known	p.S5Y	1.000	12	0%	21	28.6%	0	-	unknown(0)	-	-	NULL
LGALS9C	654346	genome.wustl.edu	37	17	18387193	18387193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040078.2	+1	validated	p.V15A	0.647	65	0%	128	16.4%	0	-	benign(0.018)	deleterious(0)	neutral(0.445)	HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
FBXW10	10517	genome.wustl.edu	37	17	18682560	18682560	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031456.3	+1	validated	p.T1035	0.980	88	0%	144	30.6%	1	100%	-	-	-	NULL
CCDC144NL	339184	genome.wustl.edu	37	17	20799111	20799111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004306.1	-1	provisional	p.D75N	0.003	72	0%	144	19.4%	0	-	possibly_damaging(0.922)	deleterious(0.05)	deleterious(0.717)	NULL
DHRS13	147015	genome.wustl.edu	37	17	27228258	27228258	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144683.3	-1	validated	p.I144	0.575	23	0%	66	22.7%	25	48%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
SSH2	85464	genome.wustl.edu	37	17	27963303	27963303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033389.2	-1	reviewed	p.D622Y	1.000	152	0%	213	38%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NSRP1	84081	genome.wustl.edu	37	17	28511765	28511765	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032141.2	+1	validated	p.F250	0.993	186	0%	186	31.2%	19	36.8%	-	-	-	NULL
SLC6A4	6532	genome.wustl.edu	37	17	28530328	28530328	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001045.4	-1	reviewed	p.P560	0.689	125	0%	162	34%	0	-	-	-	-	HMMPfam_SNF
OMG	4974	genome.wustl.edu	37	17	29622074	29622074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002544.4	-1	validated	p.A426T	0.054	551	0%	514	33.3%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
NF1	4763	genome.wustl.edu	37	17	29653179	29653179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.L1726R	0.998	155	0%	129	27.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00516
SUZ12	23512	genome.wustl.edu	37	17	30320913	30320913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015355.2	+1	reviewed	p.Q441H	0.960	94	0%	105	22.9%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO1D	4642	genome.wustl.edu	37	17	31087410	31087410	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015194.1	-1	provisional	p.F398	1.000	835	0%	828	32.4%	3	33.3%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN5	162394	genome.wustl.edu	37	17	33591578	33591578	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144975.3	+1	validated	p.S505	0.000	109	0%	168	36.9%	12	50%	-	-	-	NULL
SLFN12	55106	genome.wustl.edu	37	17	33749312	33749312	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018042.3	-1	validated	p.E246*	0.000	284	0%	316	32.3%	1	0%	-	-	-	HMMPfam_AAA_4
SLFN12L	100506736	genome.wustl.edu	37	17	33849343	33849343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145027.1	-1	validated	p.R19I	0.000	145	0%	198	35.4%	0	-	unknown(0)	deleterious(0.01)	-	NULL
GGNBP2	79893	genome.wustl.edu	37	17	34916663	34916663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024835.2	+1	validated	p.K160M	1.000	123	0%	203	10.8%	11	45.4%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
ACACA	31	genome.wustl.edu	37	17	35578754	35578754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.R1192*	1.000	143	0%	102	30.4%	2	0%	-	-	-	HMMPfam_ACC_central
WNK4	65266	genome.wustl.edu	37	17	40945619	40945619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032387.4	+1	reviewed	p.E723K	1.000	74	0%	188	35.6%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
SPPL2C	162540	genome.wustl.edu	37	17	43923486	43923486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175882.2	+1	validated	p.A405V	1.000	24	0%	86	29.1%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
LRRC37A2	474170	genome.wustl.edu	37	17	44626546	44626546	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006607.2	+1	validated	p.A1347	0.005	116	0%	179	10.6%	3	0%	-	-	-	NULL
CDC27	996	genome.wustl.edu	37	17	45214585	45214585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114091.1	-1	reviewed	p.E622*	1.000	83	0%	116	21.6%	5	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
KPNB1	3837	genome.wustl.edu	37	17	45755744	45755744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290158	+1	known	p.V773A	1.000	116	0%	178	34.8%	248	47.9%	benign(0.083)	tolerated(0.07)	neutral(0.325)	superfamily_ARM repeat
CBX1	10951	genome.wustl.edu	37	17	46154232	46154232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127228.1	-1	reviewed	p.F45L	1.000	131	0%	200	31%	37	45.9%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,superfamily_Chromo domain-like
IGF2BP1	10642	genome.wustl.edu	37	17	47118747	47118747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006546.3	+1	reviewed	p.E276K	1.000	57	0%	138	34.1%	0	-	benign(0.419)	deleterious(0.01)	deleterious(0.542)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
CACNA1G	8913	genome.wustl.edu	37	17	48696108	48696108	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018896.3	+1	validated	p.F1840	0.994	12	0%	37	35.1%	1	100%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ANKFN1	162282	genome.wustl.edu	37	17	54517729	54517729	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153228.2	+1	validated	p.E321*	1.000	118	0%	143	34.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COIL	8161	genome.wustl.edu	37	17	55027901	55027901	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004645.2	-1	reviewed	p.G234	0.022	146	0%	219	11%	10	10%	-	-	-	NULL
AKAP1	8165	genome.wustl.edu	37	17	55187411	55187411	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003488.3	+1	reviewed	p.S580	0.042	50	0%	69	33.3%	21	57.1%	-	-	-	NULL
MRPS23	51649	genome.wustl.edu	37	17	55917273	55917273	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016070.2	-1	reviewed	p.S148	0.105	177	0%	266	28.9%	274	45.9%	-	-	-	NULL
C17orf47	284083	genome.wustl.edu	37	17	56620466	56620466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038704.1	-1	predicted	p.K361T	0.001	75	0%	96	31.2%	0	-	probably_damaging(0.988)	-	-	NULL
TEX14	56155	genome.wustl.edu	37	17	56657088	56657088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198393.2	-1	reviewed	p.S1099L	0.950	68	0%	75	32%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
USP32	84669	genome.wustl.edu	37	17	58348773	58348773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032582.3	-1	validated	p.R214Q	1.000	97	0%	98	30.6%	0	-	probably_damaging(0.997)	tolerated(0.74)	neutral(0.468)	superfamily_SSF47473
FTSJ3	117246	genome.wustl.edu	37	17	61898928	61898928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017647.3	-1	reviewed	p.R558W	0.987	156	0%	283	33.9%	30	30%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
POLG2	11232	genome.wustl.edu	37	17	62489027	62489027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007215.3	-1	reviewed	p.R225Q	0.000	120	0%	239	31%	3	33.3%	benign(0.017)	tolerated(0.19)	neutral(0.050)	superfamily_SSF55681
LOC100289243	100289243	genome.wustl.edu	37	17	62746678	62746678	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343577.1	+1	model	p.P102	0.994	64	0%	84	35.7%	10	50%	-	-	-	HMMPfam_Sec63,HMMSmart_SM00611
RGS9	8787	genome.wustl.edu	37	17	63193350	63193350	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003835.3	+1	reviewed	p.E323*	1.000	69	0%	87	31%	1	0%	-	-	-	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
CEP112	201134	genome.wustl.edu	37	17	64059106	64059106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145036.3	-1	validated	p.S350Y	1.000	292	0%	347	23.9%	0	-	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66937090	66937090	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007168.2	-1	reviewed	p.S37*	0.003	113	0%	105	32.4%	1	0%	-	-	-	NULL
ABCA6	23460	genome.wustl.edu	37	17	67101675	67101675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080284.2	-1	reviewed	p.E890K	0.011	146	0%	113	35.4%	2	0%	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67190014	67190014	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080282.3	-1	reviewed	p.E488*	1.000	175	0%	207	31.4%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM47	91107	genome.wustl.edu	37	17	73870695	73870695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033452.2	-1	validated	p.R596C	0.998	6	0.000	21	0.333	132	47.7%	benign(0.307)	deleterious(0)	deleterious(0.540)	NULL
QRICH2	84074	genome.wustl.edu	37	17	74276783	74276783	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032134.1	-1	provisional	p.L1305	0.212	6	0.000	24	0.417	1	100%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78332269	78332269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.N3682D	0.000	24	0%	56	42.9%	5	40%	benign(0.025)	tolerated(0.23)	neutral(0.043)	NULL
USP14	9097	genome.wustl.edu	37	18	203147	203147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005151.3	+1	reviewed	p.F331C	1.000	265	0%	215	28.4%	18	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_SSF54001
THOC1	9984	genome.wustl.edu	37	18	214894	214894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005131.2	-1	validated	p.V569A	1.000	264	0%	258	39.5%	95	51.5%	possibly_damaging(0.617)	tolerated(0.1)	deleterious(0.501)	HMMSmart_DEATH,superfamily_DEATH_like
EMILIN2	84034	genome.wustl.edu	37	18	2891059	2891059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032048.2	+1	validated	p.E312K	0.006	62	0%	101	33.7%	1	0%	possibly_damaging(0.633)	tolerated(0.63)	neutral(0.225)	NULL
MYOM1	8736	genome.wustl.edu	37	18	3100327	3100327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.D1225N	1.000	50	0%	87	32.2%	0	-	benign(0.218)	tolerated(0.26)	neutral(0.056)	HMMSmart_SM00409,HMMPfam_V-set
PTPRM	5797	genome.wustl.edu	37	18	8076512	8076512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.L501I	1.000	110	0%	86	14%	2	0%	benign(0.096)	tolerated(0.16)	neutral(0.067)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
APCDD1	147495	genome.wustl.edu	37	18	10487854	10487854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153000.4	+1	validated	p.R455I	1.000	46	0%	57	24.6%	87	1.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NAPG	8774	genome.wustl.edu	37	18	10526103	10526103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003826.2	+1	reviewed	p.A2T	1.000	24	0%	35	22.9%	3	66.6%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
SLMO1	10650	genome.wustl.edu	37	18	12427106	12427106	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142405.1	+1	validated	p.E120*	0.764	50	0%	152	32.9%	2	100%	-	-	-	HMMPfam_PRELI
MC2R	4158	genome.wustl.edu	37	18	13885386	13885386	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000529.2	-1	reviewed	p.I44	0.989	56	0%	71	31%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANKRD30B	374860	genome.wustl.edu	37	18	14763881	14763881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.I339M	0.028	46	0%	45	33.3%	0	-	possibly_damaging(0.847)	deleterious(0.01)	deleterious(0.731)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14803793	14803793	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.E752*	0.000	72	0%	96	28.1%	0	-	-	-	-	NULL
ENSG00000180777	0	genome.wustl.edu	37	18	14810129	14810129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000320584	+1	known	p.S135Y	0.002	37	0%	48	37.5%	0	-	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	NULL
ROCK1	6093	genome.wustl.edu	37	18	18629823	18629823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005406.2	-1	reviewed	p.K65I	1.000	93	0%	103	21.4%	2	0%	benign(0.009)	deleterious(0.03)	neutral(0.365)	superfamily_Kinase_like
ESCO1	114799	genome.wustl.edu	37	18	19153312	19153312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052911.2	-1	validated	p.N498T	1.000	170	0%	165	32.1%	2	100%	benign(0.079)	tolerated(0.09)	neutral(0.302)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21419829	21419829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198129.1	+1	reviewed	p.H1091R	0.000	111	0%	118	36.4%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
ZNF521	25925	genome.wustl.edu	37	18	22806757	22806757	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015461.2	-1	validated	p.P375	0.066	118	0%	131	31.3%	0	-	-	-	-	NULL
DSC3	1825	genome.wustl.edu	37	18	28576941	28576941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001941.3	-1	reviewed	p.G770V	0.995	170	0%	129	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DSG3	1830	genome.wustl.edu	37	18	29055636	29055636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001944.2	+1	reviewed	p.D805N	0.268	167	0%	143	25.9%	1	0%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	NULL
RNF138	51444	genome.wustl.edu	37	18	29709127	29709127	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016271.3	+1	reviewed	p.E239*	1.000	88	0%	111	28.8%	10	60%	-	-	-	NULL
MEP1B	4225	genome.wustl.edu	37	18	29797906	29797906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005925.2	+1	validated	p.R690Q	0.000	107	0%	132	31.8%	0	-	benign(0.087)	tolerated(0.3)	neutral(0.035)	NULL
NOL4	8715	genome.wustl.edu	37	18	31709908	31709908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003787.3	-1	validated	p.S114L	1.000	471	0%	397	34.5%	0	-	possibly_damaging(0.706)	deleterious(0.02)	deleterious(0.637)	NULL
ZSCAN30	100101467	genome.wustl.edu	37	18	32834020	32834020	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112734.2	-1	validated	p.S293	0.820	203	0%	232	31%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
EPG5	57724	genome.wustl.edu	37	18	43534502	43534502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020964.2	-1	validated	p.E289A	1.000	133	0%	169	29%	0	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
C18orf25	147339	genome.wustl.edu	37	18	43842930	43842930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145055.3	+1	validated	p.S354Y	1.000	120	0%	129	38%	16	56.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PIAS2	9063	genome.wustl.edu	37	18	44470550	44470550	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004671.2	-1	validated	p.T164	0.013	148	0%	124	30.6%	3	0%	-	-	-	NULL
DYM	54808	genome.wustl.edu	37	18	46906063	46906063	+	Nonsense_Mutation	SNP	C	C	A	rs120074164		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017653.3	-1	reviewed	p.E87*	1.000	198	0%	204	17.2%	3	0%	-	-	-	HMMPfam_Dymeclin
MYO5B	4645	genome.wustl.edu	37	18	47500803	47500803	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.F413	0.021	153	0.7%	242	38.8%	2	100%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CXXC1	30827	genome.wustl.edu	37	18	47810828	47810828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445672	-1	known	p.A199V	1.000	65	0%	167	31.7%	52	48%	-	-	-	NULL
SKA1	220134	genome.wustl.edu	37	18	47917535	47917535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039535.2	+1	validated	p.V164A	1.000	93	0%	130	22.3%	3	0%	benign(0.21)	tolerated(0.49)	neutral(0.031)	HMMPfam_DUF1395
DCC	1630	genome.wustl.edu	37	18	50734131	50734131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.N602S	1.000	146	0%	140	29.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DSEL	92126	genome.wustl.edu	37	18	65179508	65179508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032160.2	-1	validated	p.L790V	0.997	201	0%	201	33.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DSEL	92126	genome.wustl.edu	37	18	65180379	65180379	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032160.2	-1	validated	p.L499	0.998	121	0%	138	28.3%	1	0%	-	-	-	NULL
FBXO15	201456	genome.wustl.edu	37	18	71797778	71797778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142958.1	-1	reviewed	p.E150*	1.000	145	0%	230	30.9%	0	-	-	-	-	superfamily_SSF81383
MOB3A	126308	genome.wustl.edu	37	19	2076855	2076855	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130807.2	-1	validated	p.F193	0.988	6	0.000	15	0.400	19	21%	-	-	-	HMMPfam_Mob1_phocein,superfamily_Mob1_phocein
ZNF556	80032	genome.wustl.edu	37	19	2877345	2877345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024967.1	+1	provisional	p.R130Q	0.000	52	0%	106	48.1%	1	0%	probably_damaging(0.976)	tolerated(0.67)	neutral(0.420)	superfamily_SSF57667
CATSPERD	257062	genome.wustl.edu	37	19	5744476	5744476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152784.3	+1	validated	p.F204L	0.000	160	0%	364	34.9%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
EMR1	2015	genome.wustl.edu	37	19	6906538	6906538	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450315	+1	known	e9+2	0.206	122	0%	186	34.9%	0	-	-	-	-	-
EMR1	2015	genome.wustl.edu	37	19	6921873	6921873	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001974.3	+1	reviewed	p.I590	1.000	189	0%	267	36%	0	-	-	-	-	HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like
EVI5L	115704	genome.wustl.edu	37	19	7914025	7914025	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145245.3	+1	validated	p.V182	1.000	12	0%	18	44.4%	4	75%	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
MUC16	94025	genome.wustl.edu	37	19	9086055	9086055	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.E1920	0.000	159	0%	204	32.8%	0	-	-	-	-	NULL
ZNF562	54811	genome.wustl.edu	37	19	9764083	9764083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130031.1	-1	validated	p.L275I	0.138	250	0.4%	329	28.6%	3	33.3%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF846	162993	genome.wustl.edu	37	19	9869200	9869200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077624.1	-1	validated	p.L185F	0.002	148	0%	143	36.4%	6	33.3%	possibly_damaging(0.69)	deleterious(0.05)	deleterious(0.593)	superfamily_C2H2 and C2HC zinc fingers
OLFM2	93145	genome.wustl.edu	37	19	9971459	9971459	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058164.2	-1	provisional	p.Q25	0.999	6	0.000	11	0.364	7	85.7%	-	-	-	NULL
DNM2	1785	genome.wustl.edu	37	19	10913005	10913005	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005360.1	+1	reviewed	p.T488	0.751	18	0%	44	27.3%	101	53.4%	-	-	-	HMMPfam_Dynamin_M
RAB3D	9545	genome.wustl.edu	37	19	11447873	11447873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004283.3	-1	validated	p.D68G	1.000	119	0%	306	26.1%	20	50%	possibly_damaging(0.521)	tolerated(1)	neutral(0.175)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
CCDC151	115948	genome.wustl.edu	37	19	11545607	11545607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145045.4	-1	validated	p.K77N	0.999	41	0%	103	26.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF763	284390	genome.wustl.edu	37	19	12089301	12089301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012753.1	+1	validated	p.R191*	0.000	212	0%	367	30.5%	6	50%	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF433	163059	genome.wustl.edu	37	19	12126814	12126814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080411.1	-1	provisional	p.A290T	0.863	109	0%	212	34.9%	1	0%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12155800	12155800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080404.1	-1	inferred	p.G186E	0.758	168	0%	351	33%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	superfamily_C2H2 and C2HC zinc fingers
ZNF442	79973	genome.wustl.edu	37	19	12460636	12460636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030824.2	-1	validated	p.R588Q	0.000	207	0%	292	30.5%	3	0%	benign(0.023)	tolerated(0.73)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF442	79973	genome.wustl.edu	37	19	12461342	12461342	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030824.2	-1	validated	p.I353L	0.698	581	0%	838	29%	0	-	benign(0.023)	tolerated(0.08)	neutral(0.301)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF799	90576	genome.wustl.edu	37	19	12501710	12501710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080821.1	-1	validated	p.E501G	1.000	358	0%	501	36.3%	3	33.3%	possibly_damaging(0.917)	deleterious(0.04)	deleterious(0.717)	superfamily_C2H2 and C2HC zinc fingers
WDR83	84292	genome.wustl.edu	37	19	12781083	12781083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099737.2	+1	reviewed	p.F105S	1.000	20	0%	55	23.6%	33	45.4%	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CACNA1A	773	genome.wustl.edu	37	19	13386694	13386694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127222.1	-1	reviewed	p.V1320A	1.000	33	0%	83	26.5%	0	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1A	773	genome.wustl.edu	37	19	13419322	13419322	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127222.1	-1	reviewed	p.F563	0.935	20	0%	40	25%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
PKN1	5585	genome.wustl.edu	37	19	14557323	14557323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213560.1	+1	reviewed	p.A193V	0.934	14	0%	68	22.1%	46	23.9%	benign(0.007)	tolerated(0.34)	neutral(0.023)	HMMPfam_HR1,HMMSmart_SM00742,superfamily_HR1 repeat
ENSG00000225607	0	genome.wustl.edu	37	19	15890551	15890551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412610	-1	known	p.Q57H	0.066	24	0%	60	40%	0	-	-	-	-	superfamily_Cytochrome P450
CPAMD8	27151	genome.wustl.edu	37	19	17091369	17091369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015692.2	-1	validated	p.R555Q	0.998	26	0%	38	34.2%	5	60%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_A2M_N_2
PBX4	80714	genome.wustl.edu	37	19	19680940	19680940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025245.1	-1	reviewed	p.R204C	1.000	8	0.000	29	0.276	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PBC
ZNF626	199777	genome.wustl.edu	37	19	20808128	20808128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076675.2	-1	validated	p.F185L	0.002	280	0%	337	13.6%	2	0%	benign(0)	tolerated(0.72)	neutral(0.002)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF714	148206	genome.wustl.edu	37	19	21281114	21281114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000291770	+1	known	p.L14V	0.133	182	0%	264	37.5%	0	-	benign(0.33)	tolerated(0.07)	neutral(0.422)	HMMSmart_SM00349
ZNF708	7562	genome.wustl.edu	37	19	21476601	21476601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021269.2	-1	validated	p.E389D	1.000	351	0%	463	28.9%	4	50%	benign(0.011)	deleterious(0.02)	neutral(0.384)	superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21991060	21991060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003423.2	-1	validated	p.F593L	0.923	276	0%	347	34.6%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	superfamily_C2H2 and C2HC zinc fingers
ZNF208	7757	genome.wustl.edu	37	19	22157072	22157072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.K255T	0.006	320	0%	422	10.2%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_SSF57667
ZNF257	113835	genome.wustl.edu	37	19	22271727	22271727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033468.2	+1	provisional	p.R392I	1.000	200	0%	235	17.4%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22496986	22496986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.R123I	0.018	135	0%	231	18.2%	0	-	possibly_damaging(0.592)	tolerated(0.17)	neutral(0.263)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497357	22497357	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.E247*	0.490	425	0%	540	31.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22498330	22498330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.I571T	0.998	330	0%	449	28.7%	0	-	benign(0.301)	tolerated(0.16)	neutral(0.152)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24310450	24310450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203282.2	+1	validated	p.K550E	0.015	426	0.2%	482	41.1%	14	42.8%	benign(0.001)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TSHZ3	57616	genome.wustl.edu	37	19	31767955	31767955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.R915Q	1.000	37	0%	73	38.4%	2	0%	probably_damaging(0.987)	tolerated(0.18)	deleterious(0.492)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ANKRD27	84079	genome.wustl.edu	37	19	33130360	33130360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.F340L	1.000	31	0%	99	13.1%	2	50%	benign(0.019)	tolerated(0.28)	neutral(0.033)	HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993
SCGB2B2	284402	genome.wustl.edu	37	19	35085231	35085231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025591.2	-1	validated	p.A32V	0.058	76	0%	196	30.1%	0	-	possibly_damaging(0.507)	-	-	superfamily_Secretoglobin
LOC100132622	100132622	genome.wustl.edu	37	19	36159451	36159451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719701.1	-1	model	p.D52Y	1.000	27	0%	59	32.2%	0	-	-	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36222961	36222961	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.R1864*	1.000	7	0.000	26	0.231	6	33.3%	-	-	-	NULL
PRODH2	58510	genome.wustl.edu	37	19	36297638	36297638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021232.1	-1	reviewed	p.R334L	1.000	28	0%	40	30%	0	-	benign(0.429)	deleterious(0.01)	deleterious(0.545)	HMMPfam_Pro_dh,superfamily_SSF51730
PRODH2	58510	genome.wustl.edu	37	19	36297998	36297998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021232.1	-1	reviewed	p.A284D	0.000	6	0.000	12	0.333	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Pro_dh,superfamily_SSF51730
APLP1	333	genome.wustl.edu	37	19	36367468	36367468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024807.1	+1	reviewed	p.G465D	1.000	14	0%	32	37.5%	5	80%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
ZNF345	25850	genome.wustl.edu	37	19	37368919	37368919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003419.3	+1	provisional	p.R396I	0.989	368	0%	398	12.3%	1	0%	benign(0.056)	deleterious(0)	neutral(0.448)	superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37676966	37676966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152279.3	-1	validated	p.E491D	1.000	351	0%	433	27.5%	1	100%	benign(0.368)	deleterious(0.02)	deleterious(0.500)	superfamily_SSF57667
C19orf33	64073	genome.wustl.edu	37	19	38795547	38795549	+	In_Frame_Del	DEL	GAA	GAA	-	rs139805446	byCluster;by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033520.1	+1	provisional	p.K91in_frame_del	0.206:0.197:0.147	-	-	-	-	-	-	-	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39002960	39002960	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.I3103	0.294	20	0%	74	32.4%	0	-	-	-	-	NULL
FBXO17	115290	genome.wustl.edu	37	19	39433344	39433344	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148169.1	-1	reviewed	p.S256	0.866	38	0%	110	34.5%	6	0%	-	-	-	HMMPfam_FBA,superfamily_Galactose-binding domain-like
PLEKHG2	64857	genome.wustl.edu	37	19	39915363	39915363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022835.2	+1	validated	p.S1197L	0.001	102	0%	318	30.8%	22	45.4%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
PSMC4	5704	genome.wustl.edu	37	19	40485861	40485861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006503.2	+1	reviewed	p.A271T	1.000	92	0%	140	22.1%	311	44.6%	possibly_damaging(0.884)	deleterious(0.03)	deleterious(0.710)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF229	7772	genome.wustl.edu	37	19	44934494	44934494	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014518.2	-1	validated	p.E154	0.000	121	0%	158	27.2%	0	-	-	-	-	NULL
KPTN	11133	genome.wustl.edu	37	19	47984032	47984032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007059.2	-1	validated	p.T195M	0.994	49	0%	90	24.4%	38	47.3%	possibly_damaging(0.946)	tolerated(0.15)	deleterious(0.631)	NULL
SYNGR4	23546	genome.wustl.edu	37	19	48879403	48879403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012451.2	+1	reviewed	p.R178H	1.000	34	0%	58	25.9%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
SPACA4	171169	genome.wustl.edu	37	19	49110402	49110402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133498.2	+1	validated	p.G56D	0.060	12	0%	34	38.2%	1	100%	probably_damaging(0.999)	tolerated(0.37)	deleterious(0.509)	HMMPfam_UPAR_LY6,superfamily_SSF57302
CGB	1082	genome.wustl.edu	37	19	49526297	49526297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000737.2	-1	reviewed	p.R115H	0.542	26	0%	65	13.8%	0	-	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	HMMSmart_SM00068,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_Cystine-knot cytokines
SIGLEC7	27036	genome.wustl.edu	37	19	51648167	51648167	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014385.2	+1	validated	e3-2	0.019	75	0%	169	30.8%	0	-	-	-	-	-
ZNF577	84765	genome.wustl.edu	37	19	52376599	52376599	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032679.2	-1	validated	p.E215A	0.000	143	0%	181	37.6%	3	66.6%	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF432	9668	genome.wustl.edu	37	19	52536998	52536998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014650.2	-1	provisional	p.R645Q	0.024	264	0%	330	29.1%	4	50%	benign(0.214)	deleterious(0.04)	neutral(0.370)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52619792	52619792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178523.3	-1	validated	p.T209A	0.038	277	1.1%	239	10.5%	1	0%	possibly_damaging(0.664)	tolerated(0.27)	neutral(0.268)	superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52658178	52658178	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102657.1	-1	provisional	p.K920Q	0.000	98	0%	130	34.6%	9	22.2%	probably_damaging(0.983)	tolerated(0.49)	neutral(0.440)	NULL
ZNF610	162963	genome.wustl.edu	37	19	52869132	52869132	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173530.2	+1	validated	p.I167M	0.005	209	0%	293	33.4%	2	50%	possibly_damaging(0.822)	tolerated(0.09)	deleterious(0.607)	NULL
ZNF83	55769	genome.wustl.edu	37	19	53116556	53116556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105549.1	-1	validated	p.R421I	0.025	278	0%	423	33.1%	17	64.7%	benign(0.005)	tolerated(0.09)	neutral(0.296)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53209139	53209139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030972.3	-1	validated	p.R390I	0.999	297	0.7%	437	38.4%	1	100%	possibly_damaging(0.701)	tolerated(0.12)	deleterious(0.512)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
ZNF28	7576	genome.wustl.edu	37	19	53303814	53303814	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006969.2	-1	validated	p.K375	0.008	284	0%	411	30.4%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF665	79788	genome.wustl.edu	37	19	53668982	53668982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024733.3	-1	provisional	p.R254I	0.023	272	0%	392	35.5%	0	-	benign(0.268)	tolerated(0.17)	neutral(0.087)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF818P	390963	genome.wustl.edu	37	19	53716480	53716480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344759	+1	known	p.R81I	0.008	8	0.000	9	0.444	1	0%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NLRP12	91662	genome.wustl.edu	37	19	54314492	54314492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144687.2	-1	reviewed	p.E141K	0.825	22	0%	55	36.4%	0	-	possibly_damaging(0.858)	tolerated(0.87)	neutral(0.332)	NULL
CACNG7	59284	genome.wustl.edu	37	19	54418681	54418681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031896.3	+1	reviewed	p.V116I	1.000	40	0%	45	37.8%	0	-	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_PMP22_Claudin
LILRB2	10288	genome.wustl.edu	37	19	54782713	54782713	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005874.3	-1	reviewed	p.S303	0.066	17	0%	26	38.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
KIR3DL2	3812	genome.wustl.edu	37	19	55377839	55377839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006737.2	+1	reviewed	p.D374Y	0.004	347	0%	472	29.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NLRP7	199713	genome.wustl.edu	37	19	55438997	55438997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127255.1	-1	reviewed	p.R986I	0.000	98	0%	248	30.2%	5	80%	possibly_damaging(0.463)	tolerated(0.09)	neutral(0.449)	superfamily_RNI-like
GP6	51206	genome.wustl.edu	37	19	55526203	55526203	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083899.1	-1	validated	p.E370D	0.000	74	0%	124	37.9%	2	100%	unknown(0)	-	-	NULL
TNNT1	7138	genome.wustl.edu	37	19	55653228	55653228	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003283.4	-1	reviewed	p.F63	1.000	27	0%	89	22.5%	1	100%	-	-	-	NULL
ZSCAN5A	79149	genome.wustl.edu	37	19	56736094	56736094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024303.1	-1	provisional	p.G108C	0.000	67	0%	126	28.6%	1	100%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_SCAN,HMMSmart_SCAN
ZNF471	57573	genome.wustl.edu	37	19	57027674	57027674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020813.2	+1	validated	p.D22Y	0.117	241	0.4%	278	29.5%	1	100%	possibly_damaging(0.697)	tolerated(0.1)	deleterious(0.536)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZFP28	140612	genome.wustl.edu	37	19	57066484	57066484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020828.1	+1	provisional	p.R777I	0.995	353	0%	333	30%	0	-	probably_damaging(0.99)	tolerated(0.17)	deleterious(0.500)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PEG3	5178	genome.wustl.edu	37	19	57326152	57326152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006210.2	-1	reviewed	p.L1220I	0.001	228	0%	291	30.9%	0	-	possibly_damaging(0.601)	tolerated(0.21)	neutral(0.252)	superfamily_C2H2 and C2HC zinc fingers
PEG3	5178	genome.wustl.edu	37	19	57334963	57334963	+	Missense_Mutation	SNP	A	A	C	rs35355795	byCluster;byFrequency	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006210.2	-1	reviewed	p.F160C	0.014	33	0%	62	27.4%	0	-	possibly_damaging(0.576)	tolerated(0.27)	neutral(0.231)	NULL
PEG3	5178	genome.wustl.edu	37	19	57335892	57335892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006210.2	-1	reviewed	p.F44L	0.989	83	0%	86	23.3%	0	-	possibly_damaging(0.888)	deleterious(0.03)	deleterious(0.712)	HMMPfam_SCAN,HMMSmart_SM00431
ZNF547	284306	genome.wustl.edu	37	19	57889367	57889367	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173631.2	+1	validated	p.Q341	0.001	243	0%	427	31.1%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
VN1R1	57191	genome.wustl.edu	37	19	57967043	57967043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020633.2	-1	reviewed	p.A271D	0.466	137	0%	184	17.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like
ZNF772	400720	genome.wustl.edu	37	19	57985398	57985398	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024596.2	-1	validated	p.F238	0.005	109	0%	184	40.2%	0	-	-	-	-	NULL
ZNF773	374928	genome.wustl.edu	37	19	58017979	58017979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198542.1	+1	provisional	p.E172D	0.181	141	0%	232	32.3%	1	100%	benign(0.001)	tolerated(0.43)	neutral(0.013)	superfamily_C2H2 and C2HC zinc fingers
ZIK1	284307	genome.wustl.edu	37	19	58101525	58101525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010879.2	+1	provisional	p.A116S	0.001	149	0%	260	34.2%	0	-	benign(0.013)	tolerated(0.12)	neutral(0.261)	NULL
ZNF211	10520	genome.wustl.edu	37	19	58152984	58152984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006385.3	+1	validated	p.S390Y	0.003	229	0%	338	33.4%	3	0%	possibly_damaging(0.602)	tolerated(0.36)	neutral(0.228)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZSCAN4	201516	genome.wustl.edu	37	19	58187754	58187754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152677.2	+1	validated	p.D81Y	0.999	95	0%	147	33.3%	1	100%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_SCAN
ZNF551	90233	genome.wustl.edu	37	19	58199354	58199354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138347.3	+1	validated	p.S555R	0.000	266	0.4%	479	11.5%	1	0%	possibly_damaging(0.767)	tolerated(0.73)	neutral(0.286)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF776	284309	genome.wustl.edu	37	19	58264652	58264652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431353	+1	known	p.F57L	0.028	98	0%	160	25%	1	0%	benign(0.009)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF776	284309	genome.wustl.edu	37	19	58265990	58265990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173632.3	+1	validated	p.R498C	0.000	175	0.6%	285	32.6%	0	-	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF544	27300	genome.wustl.edu	37	19	58773135	58773135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014480.2	+1	provisional	p.S388Y	0.006	66	0%	101	28.7%	6	33.3%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF132	7691	genome.wustl.edu	37	19	58945910	58945910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003433.3	-1	validated	p.S301G	0.017	84	0%	113	25.7%	1	100%	possibly_damaging(0.936)	tolerated(0.29)	neutral(0.411)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DEFB129	140881	genome.wustl.edu	37	20	210075	210075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080831.2	+1	validated	p.P72L	0.000	238	0%	215	33.5%	0	-	benign(0.075)	tolerated(0.09)	neutral(0.301)	NULL
CSNK2A1	1457	genome.wustl.edu	37	20	476388	476388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001895.3	-1	reviewed	p.V162A	1.000	114	0%	112	33%	25	44%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SIRPB1	10326	genome.wustl.edu	37	20	1559159	1559159	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006065.3	-1	reviewed	p.F86	0.000	158	0%	212	29.7%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
FAM113A	64773	genome.wustl.edu	37	20	2820510	2820510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022760.3	-1	predicted	p.D17N	0.992	7	0.000	27	0.222	9	44.4%	benign(0)	tolerated(0.96)	-	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3128701	3128701	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021826.4	-1	validated	p.K339T	0.976	116	0%	157	32.5%	5	80%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
PAK7	57144	genome.wustl.edu	37	20	9561060	9561060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020341.3	-1	reviewed	p.G241E	1.000	282	0%	295	32.2%	0	-	unknown(0)	tolerated(0.45)	-	NULL
JAG1	182	genome.wustl.edu	37	20	10639128	10639128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.E228K	1.000	124	0.8%	209	26.3%	4	75%	benign(0.186)	tolerated(0.2)	neutral(0.067)	HMMPfam_DSL,HMMSmart_DSL
FLRT3	23767	genome.wustl.edu	37	20	14306338	14306338	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013281.2	-1	reviewed	p.S605	1.000	213	0%	215	30.7%	0	-	-	-	-	NULL
KIF16B	55614	genome.wustl.edu	37	20	16337070	16337070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024704.3	-1	validated	p.N1176D	1.000	58	0%	80	28.7%	3	66.6%	probably_damaging(0.969)	tolerated(0.16)	deleterious(0.471)	superfamily_PX domain
PCSK2	5126	genome.wustl.edu	37	20	17462701	17462701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002594.2	+1	reviewed	p.L635I	1.000	17	0%	21	28.6%	0	-	possibly_damaging(0.556)	deleterious(0)	deleterious(0.634)	NULL
CST1	1469	genome.wustl.edu	37	20	23731499	23731499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001898.2	-1	reviewed	p.A2V	0.352	18	0%	33	45.5%	1	0%	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
ENTPD6	955	genome.wustl.edu	37	20	25204780	25204780	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447877	+1	known	p.S269L	0.053	5	0.000	15	0.267	86	60.4%	-	-	-	HMMPfam_GDA1_CD39
DEFB119	245932	genome.wustl.edu	37	20	29976866	29976866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153323.3	-1	validated	p.T77A	0.000	231	0%	288	36.8%	0	-	benign(0.395)	deleterious(0)	deleterious(0.572)	NULL
XKR7	343702	genome.wustl.edu	37	20	30585208	30585208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011718.1	+1	provisional	p.Y563C	1.000	5	0.000	36	0.222	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HCK	3055	genome.wustl.edu	37	20	30681808	30681808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002110.3	+1	reviewed	p.T412K	0.922	37	0%	47	42.6%	6	33.3%	benign(0.27)	deleterious(0.04)	neutral(0.378)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CBFA2T2	9139	genome.wustl.edu	37	20	32212579	32212579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005093.3	+1	reviewed	p.E243D	0.912	126	0%	189	31.2%	5	20%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33328808	33328808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.S1751Y	1.000	53	0%	74	18.9%	20	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33342596	33342596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.S535L	0.998	104	0%	109	36.7%	0	-	benign(0.176)	deleterious(0)	neutral(0.461)	NULL
C20orf24	55969	genome.wustl.edu	37	20	35240579	35240579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199483.1	+1	validated	p.E129K	0.740	110	0%	249	31.7%	484	47.7%	benign(0.043)	deleterious(0)	neutral(0.447)	HMMPfam_Rab5ip
NDRG3	57446	genome.wustl.edu	37	20	35310919	35310919	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032013.2	-1	validated	e6+2	1.000	65	0%	122	36.9%	0	-	-	-	-	-
ZHX3	23051	genome.wustl.edu	37	20	39832964	39832964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015035.3	-1	reviewed	p.K198T	1.000	184	0%	161	34.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HNF4A	3172	genome.wustl.edu	37	20	43052674	43052674	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000457.3	+1	reviewed	p.S303	0.480	14	0%	20	40%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
PABPC1L	80336	genome.wustl.edu	37	20	43545442	43545442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001124756.1	+1	provisional	p.F145V	1.000	61	0%	109	37.6%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RBPJL	11317	genome.wustl.edu	37	20	43945485	43945485	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014276.2	+1	reviewed	p.S480	0.665	39	0%	96	32.3%	0	-	-	-	-	NULL
ZNF334	55713	genome.wustl.edu	37	20	45130103	45130103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018102.3	-1	validated	p.E625D	1.000	234	0%	233	35.2%	1	0%	possibly_damaging(0.697)	deleterious(0.02)	deleterious(0.633)	superfamily_SSF57667
ZNF334	55713	genome.wustl.edu	37	20	45130368	45130368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018102.3	-1	validated	p.R537I	0.528	317	0%	342	34.5%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	superfamily_SSF57667
ZNF334	55713	genome.wustl.edu	37	20	45131208	45131208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018102.3	-1	validated	p.R257I	1.000	146	0%	191	34.6%	0	-	possibly_damaging(0.902)	tolerated(0.16)	neutral(0.416)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SLC13A3	64849	genome.wustl.edu	37	20	45192088	45192088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022829.4	-1	reviewed	p.A533T	1.000	13	0%	18	22.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Na_sulph_symp
ZNFX1	57169	genome.wustl.edu	37	20	47881369	47881369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021035.2	-1	validated	p.R679W	1.000	122	0.8%	122	32%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CBLN4	140689	genome.wustl.edu	37	20	54578975	54578975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080617.4	-1	reviewed	p.E85K	1.000	56	0%	55	27.3%	0	-	possibly_damaging(0.796)	tolerated(0.13)	deleterious(0.551)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
ZBP1	81030	genome.wustl.edu	37	20	56191234	56191234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432548	-1	known	p.D109Y	0.007	15	0%	25	36%	0	-	-	-	-	NULL
RAB22A	57403	genome.wustl.edu	37	20	56928527	56928527	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020673.2	+1	reviewed	p.R104*	1.000	112	0%	143	16.8%	17	0%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF831	128611	genome.wustl.edu	37	20	57768155	57768155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178457.1	+1	provisional	p.G694E	0.000	4	0.000	31	0.355	0	-	possibly_damaging(0.798)	tolerated(0.08)	deleterious(0.601)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58442873	58442873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.N1340H	0.000	193	0%	136	33.8%	1	100%	probably_damaging(0.982)	tolerated(0.18)	deleterious(0.482)	NULL
CDH26	60437	genome.wustl.edu	37	20	58562650	58562650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177980.2	+1	reviewed	p.S327L	0.000	68	0%	93	28%	1	100%	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TCFL5	10732	genome.wustl.edu	37	20	61490808	61490808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006602.2	-1	validated	p.S301Y	1.000	53	0%	64	34.4%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
USP25	29761	genome.wustl.edu	37	21	17250772	17250772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013396.3	+1	validated	p.R1049Q	1.000	180	0%	169	36.1%	31	16.1%	possibly_damaging(0.706)	tolerated(0.17)	neutral(0.313)	NULL
C21orf91	54149	genome.wustl.edu	37	21	19165819	19165819	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100420.1	-1	validated	p.I269	0.927	75	0%	47	25.5%	15	26.6%	-	-	-	HMMPfam_EURL
JAM2	58494	genome.wustl.edu	37	21	27081748	27081748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021219.2	+1	reviewed	p.E270*	0.995	75	0%	80	38.8%	5	0%	-	-	-	NULL
LTN1	26046	genome.wustl.edu	37	21	30339154	30339154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015565.2	-1	validated	p.E553D	0.050	156	0%	156	24.4%	1	100%	possibly_damaging(0.489)	tolerated(0.38)	neutral(0.180)	superfamily_ARM repeat
CLDN8	9073	genome.wustl.edu	37	21	31587676	31587676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199328.2	-1	reviewed	p.E190K	0.183	138	0.7%	114	14%	0	-	benign(0.003)	tolerated(0.57)	neutral(0.006)	NULL
KRTAP11-1	337880	genome.wustl.edu	37	21	32253404	32253404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175858.2	-1	validated	p.V147A	0.051	118	0%	108	28.7%	0	-	benign(0.004)	deleterious(0.03)	neutral(0.364)	HMMPfam_PMG
GCFC1	94104	genome.wustl.edu	37	21	34110616	34110616	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016631.3	-1	reviewed	p.F783	1.000	133	0%	133	15%	5	80%	-	-	-	HMMPfam_GCFC
DNAJC28	54943	genome.wustl.edu	37	21	34860704	34860704	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040192.1	-1	validated	p.E333*	1.000	92	0%	153	29.4%	4	25%	-	-	-	NULL
DNAJC28	54943	genome.wustl.edu	37	21	34861619	34861619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040192.1	-1	validated	p.M28L	0.001	68	0%	132	35.6%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37623473	37623473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.K1671T	1.000	44	0%	58	32.8%	4	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
LCA5L	150082	genome.wustl.edu	37	21	40778350	40778350	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152505.3	-1	validated	p.E491*	0.005	75	0%	101	24.8%	1	0%	-	-	-	NULL
FAM3B	54097	genome.wustl.edu	37	21	42716444	42716444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058186.3	+1	validated	p.N110S	1.000	53	0%	54	18.5%	43	37.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C21orf33	8209	genome.wustl.edu	37	21	45563136	45563136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004649.6	+1	reviewed	p.E191K	1.000	8	0.000	17	0.235	106	33%	benign(0.341)	tolerated(0.38)	neutral(0.125)	HMMPfam_DJ-1_PfpI,superfamily_Class I glutamine amidotransferase-like
ADARB1	104	genome.wustl.edu	37	21	46596405	46596405	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015833.3	+1	validated	p.F263	0.934	62	0%	106	30.2%	2	50%	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
COL6A1	1291	genome.wustl.edu	37	21	47421198	47421198	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001848.2	+1	reviewed	p.F618	1.000	6	0.000	31	0.194	46	0%	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
DIP2A	23181	genome.wustl.edu	37	21	47910559	47910559	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015151.3	+1	reviewed	p.S70	0.950	13	0%	27	33.3%	3	66.6%	-	-	-	HMMPfam_DMAP_binding
OR11H1	81061	genome.wustl.edu	37	22	16449709	16449709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005239.1	-1	provisional	p.F32L	0.236	882	0%	779	12.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
IGLV3-25	28793	genome.wustl.edu	37	22	23029254	23029254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390305	+1	known	p.L8I	0.001	27	0%	38	50%	43	0%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
ADRBK2	157	genome.wustl.edu	37	22	26057559	26057559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005160.3	+1	reviewed	p.K94T	1.000	68	0%	51	27.5%	0	-	benign(0.109)	tolerated(0.61)	neutral(0.013)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
MYO18B	84700	genome.wustl.edu	37	22	26423514	26423514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.K2525R	1.000	49	0%	75	34.7%	3	0%	benign(0.008)	tolerated(0.36)	neutral(0.020)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26707793	26707793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021115.4	+1	validated	p.D581N	1.000	180	0.6%	299	27.4%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C22orf31	25770	genome.wustl.edu	37	22	29456529	29456529	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015370.1	-1	predicted	p.S102	0.000	76	0%	116	31.9%	0	-	-	-	-	NULL
OSM	5008	genome.wustl.edu	37	22	30661091	30661091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020530.3	-1	reviewed	p.A26V	0.002	19	0%	103	36.9%	1	0%	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_LIF_OSM
CCDC157	550631	genome.wustl.edu	37	22	30772688	30772688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017437.2	+1	validated	p.R738Q	0.000	7	0.000	20	0.400	2	50%	benign(0.033)	tolerated(0.33)	neutral(0.026)	NULL
SLC5A4	6527	genome.wustl.edu	37	22	32626980	32626980	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014227.2	-1	validated	p.T368	0.066	52	0%	50	34%	0	-	-	-	-	HMMPfam_SSF
APOL1	8542	genome.wustl.edu	37	22	36657678	36657678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145343.2	+1	reviewed	p.F91S	0.001	42	0%	74	41.9%	82	51.2%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
RAC2	5880	genome.wustl.edu	37	22	37637190	37637190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401529	-1	known	p.A42T	0.001	8	0.000	39	0.385	0	-	benign(0.05)	deleterious(0.01)	neutral(0.409)	NULL
CARD10	29775	genome.wustl.edu	37	22	37893107	37893107	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014550.3	-1	reviewed	p.S622	0.000	20	0%	57	26.3%	19	42.1%	-	-	-	NULL
SREBF2	6721	genome.wustl.edu	37	22	42269984	42269984	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004599.2	+1	reviewed	p.I350	1.000	36	0%	66	18.2%	19	52.6%	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
LOC100289204	100289204	genome.wustl.edu	37	22	42537363	42537363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343781.1	+1	model	p.R218C	0.000	8	0.000	33	0.394	7	42.8%	unknown(0)	-	-	NULL
TCF20	6942	genome.wustl.edu	37	22	42609778	42609778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005650.1	-1	reviewed	p.K512E	1.000	269	0%	401	28.2%	6	66.6%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	NULL
SCUBE1	80274	genome.wustl.edu	37	22	43715941	43715941	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173050.2	-1	validated	e3+2	1.000	84	0%	111	36.9%	0	-	-	-	-	-
EFCAB6	64800	genome.wustl.edu	37	22	44127641	44127641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022785.2	-1	validated	p.V232A	0.000	44	0%	75	28%	1	100%	benign(0.001)	tolerated(0.49)	neutral(0.011)	superfamily_EF-hand
SMC1B	27127	genome.wustl.edu	37	22	45795017	45795017	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148674.3	-1	validated	p.E357D	0.730	154	0%	235	34.5%	0	-	benign(0.008)	tolerated(0.08)	neutral(0.300)	HMMPfam_SMC_N,superfamily_SSF52540
MXRA5	25878	genome.wustl.edu	37	X	3239636	3239636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.E1364K	0.001	86	0%	146	30.1%	3	33.3%	possibly_damaging(0.667)	tolerated(0.08)	deleterious(0.536)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3248192	3248192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.E192D	0.864	48	0%	72	38.9%	0	-	benign(0.004)	tolerated(0.96)	-	HMMSmart_SM00369,superfamily_L domain-like
ATXN3L	92552	genome.wustl.edu	37	X	13337195	13337195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135995.1	-1	validated	p.F287V	0.994	323	0%	351	31.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
OFD1	8481	genome.wustl.edu	37	X	13754736	13754736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003611.2	+1	reviewed	p.R84I	0.992	312	0%	377	30.2%	4	0%	possibly_damaging(0.938)	tolerated(0.2)	neutral(0.432)	HMMSmart_SM00667
OFD1	8481	genome.wustl.edu	37	X	13775907	13775907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003611.2	+1	reviewed	p.E514K	0.985	129	0%	137	27%	6	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GEMIN8	54960	genome.wustl.edu	37	X	14027161	14027161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042479.1	-1	reviewed	p.E200D	1.000	110	0.9%	131	33.6%	57	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
FANCB	2187	genome.wustl.edu	37	X	14861707	14861707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.Q854H	0.974	356	0.3%	269	30.1%	0	-	possibly_damaging(0.538)	tolerated(0.14)	neutral(0.431)	NULL
FANCB	2187	genome.wustl.edu	37	X	14863026	14863026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.L627I	1.000	552	0%	419	33.4%	1	0%	possibly_damaging(0.921)	tolerated(1)	neutral(0.371)	NULL
CTPS2	56474	genome.wustl.edu	37	X	16717206	16717206	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144002.1	-1	reviewed	p.F59	1.000	133	0%	194	35.1%	5	0%	-	-	-	HMMPfam_CTP_synth_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDKL5	6792	genome.wustl.edu	37	X	18600028	18600028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037343.1	+1	reviewed	p.L141I	1.000	348	0%	300	35.3%	0	-	possibly_damaging(0.748)	tolerated(0.22)	neutral(0.317)	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
CDKL5	6792	genome.wustl.edu	37	X	18622142	18622142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037343.1	+1	reviewed	p.F366L	0.999	476	0%	489	35.2%	0	-	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	NULL
PHKA2	5256	genome.wustl.edu	37	X	18956802	18956802	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000292.2	-1	reviewed	p.W328*	1.000	101	0%	166	28.9%	2	100%	-	-	-	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
MAP7D2	256714	genome.wustl.edu	37	X	20034378	20034378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152780.3	-1	validated	p.R452Q	0.046	122	0.8%	198	32.8%	0	-	unknown(0)	tolerated(0.11)	-	HMMPfam_MAP7
RPS6KA3	6197	genome.wustl.edu	37	X	20193391	20193391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004586.2	-1	reviewed	p.P373Q	1.000	147	0%	144	29.2%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_S_TK_X,HMMPfam_Pkinase_C
KLHL15	80311	genome.wustl.edu	37	X	24024528	24024528	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030624.2	-1	reviewed	p.E95*	1.000	303	0%	509	18.7%	0	-	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
LOC389842	389842	genome.wustl.edu	37	X	25663959	25663959	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_372200.7	-1	model	p.I162	0.001	122	0.8%	131	32.8%	128	0%	-	-	-	superfamily_PH domain-like
LOC389842	389842	genome.wustl.edu	37	X	25664380	25664380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_372200.7	-1	model	p.N22S	0.998	93	0%	50	24%	0	-	-	-	-	superfamily_PH domain-like
MAGEB10	139422	genome.wustl.edu	37	X	27839922	27839922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182506.3	+1	reviewed	p.D167Y	0.789	76	0%	96	33.3%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_MAGE
MAGEB10	139422	genome.wustl.edu	37	X	27840254	27840254	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182506.3	+1	reviewed	p.P277	0.001	58	0%	57	10.5%	0	-	-	-	-	HMMPfam_MAGE
MAGEB2	4113	genome.wustl.edu	37	X	30237265	30237265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002364.4	+1	reviewed	p.E190*	0.000	52	0%	65	44.6%	0	-	-	-	-	HMMPfam_MAGE
DMD	1756	genome.wustl.edu	37	X	32519935	32519935	+	Missense_Mutation	SNP	T	T	C	rs128626244		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.K773E	1.000	29	0%	35	20%	0	-	benign(0.075)	deleterious(0.01)	neutral(0.411)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47A	158724	genome.wustl.edu	37	X	34148652	34148652	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.E582*	0.000	158	0%	213	31.9%	0	-	-	-	-	NULL
CXorf22	170063	genome.wustl.edu	37	X	35974224	35974224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152632.3	+1	validated	p.E441K	0.000	305	0%	281	19.2%	0	-	benign(0)	tolerated(0.94)	-	NULL
CXorf22	170063	genome.wustl.edu	37	X	35985907	35985907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152632.3	+1	validated	p.R591Q	0.064	124	0%	91	24.2%	0	-	probably_damaging(0.997)	tolerated(0.17)	deleterious(0.525)	NULL
CXorf22	170063	genome.wustl.edu	37	X	35988963	35988963	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152632.3	+1	validated	p.K631	0.000	71	0%	56	33.9%	0	-	-	-	-	NULL
FAM47C	442444	genome.wustl.edu	37	X	37028389	37028389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013736.2	+1	validated	p.K636E	0.001	154	11%	245	19.2%	0	-	benign(0.187)	tolerated(1)	neutral(0.018)	NULL
CYBB	1536	genome.wustl.edu	37	X	37655332	37655332	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000397.3	+1	reviewed	p.V204	0.152	223	0%	177	10.2%	2	0%	-	-	-	HMMPfam_Ferric_reduct
RPGR	6103	genome.wustl.edu	37	X	38147138	38147138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034853.1	-1	reviewed	p.E577K	0.000	71	0%	61	36.1%	7	100%	possibly_damaging(0.895)	tolerated(0.07)	deleterious(0.672)	NULL
OTC	5009	genome.wustl.edu	37	X	38240627	38240627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000531.5	+1	reviewed	p.L111I	1.000	109	0%	94	34%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace_N
USP9X	8239	genome.wustl.edu	37	X	41031196	41031196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.K1045E	1.000	423	0%	407	33.7%	1	100%	benign(0.005)	tolerated(0.2)	neutral(0.049)	NULL
GPR34	2857	genome.wustl.edu	37	X	41555743	41555743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097579.1	+1	validated	p.R286Q	1.000	116	0%	88	35.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC9A7	84679	genome.wustl.edu	37	X	46508159	46508159	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032591.1	-1	reviewed	p.K474T	1.000	63	0%	89	28.1%	4	0%	possibly_damaging(0.498)	deleterious(0.03)	deleterious(0.531)	HMMPfam_Na_H_Exchanger
PHF16	9767	genome.wustl.edu	37	X	46887475	46887475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077445.1	+1	reviewed	p.F219L	1.000	115	0%	121	28.1%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
PORCN	64840	genome.wustl.edu	37	X	48369747	48369747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203475.1	+1	reviewed	p.F67L	1.000	58	0%	131	27.5%	16	0%	possibly_damaging(0.719)	tolerated(0.13)	deleterious(0.513)	NULL
PIM2	11040	genome.wustl.edu	37	X	48771423	48771423	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006875.3	-1	reviewed	p.W307*	0.542	6	0.000	16	0.500	3	0%	-	-	-	NULL
CACNA1F	778	genome.wustl.edu	37	X	49086968	49086968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.R209W	1.000	8	0.000	15	0.267	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CLCN5	1184	genome.wustl.edu	37	X	49856787	49856787	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127898.1	+1	reviewed	p.R788*	1.000	174	0%	159	32.1%	2	0%	-	-	-	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
CCNB3	85417	genome.wustl.edu	37	X	50054374	50054374	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.E1069*	0.003	160	0%	166	27.1%	0	-	-	-	-	NULL
FAM120C	54954	genome.wustl.edu	37	X	54161390	54161390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017848.4	-1	validated	p.V497A	0.979	52	0%	42	19%	0	-	benign(0.004)	tolerated(0.36)	neutral(0.020)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54776435	54776435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.L1279M	1.000	22	0%	29	41.4%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
APEX2	27301	genome.wustl.edu	37	X	55028732	55028732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014481.2	+1	reviewed	p.E97G	1.000	50	0%	40	20%	15	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
MAGEH1	28986	genome.wustl.edu	37	X	55479059	55479059	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014061.3	+1	reviewed	p.F84	1.000	58	0%	62	32.3%	2	0%	-	-	-	NULL
SPIN2A	54466	genome.wustl.edu	37	X	57162350	57162350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019003.3	-1	reviewed	p.M227I	1.000	347	0%	420	29.8%	5	0%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Spin-Ssty
FAM123B	139285	genome.wustl.edu	37	X	63411643	63411643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152424.3	-1	reviewed	p.F508L	1.000	87	0%	149	21.5%	1	0%	probably_damaging(0.971)	tolerated(0.9)	neutral(0.413)	HMMPfam_WTX
MSN	4478	genome.wustl.edu	37	X	64957102	64957102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.E385K	1.000	48	0%	73	27.4%	63	68.2%	benign(0.019)	tolerated(0.07)	neutral(0.320)	HMMPfam_ERM
OPHN1	4983	genome.wustl.edu	37	X	67518844	67518844	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002547.2	-1	reviewed	p.I83	0.986	139	0%	130	38.5%	1	0%	-	-	-	NULL
IGBP1	3476	genome.wustl.edu	37	X	69354375	69354375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001551.2	+1	reviewed	p.R64Q	0.927	41	0%	74	32.4%	42	0%	benign(0.18)	tolerated(0.43)	neutral(0.030)	HMMPfam_TAP42
ARR3	407	genome.wustl.edu	37	X	69496309	69496309	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004312.2	+1	validated	p.V124	1.000	46	0%	79	25.3%	0	-	-	-	-	HMMPfam_Arrestin_N,superfamily_E set domains
IL2RG	3561	genome.wustl.edu	37	X	70330099	70330099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000206.2	-1	reviewed	p.E167D	0.997	125	0%	277	25.3%	14	0%	benign(0.002)	tolerated(0.68)	neutral(0.002)	HMMSmart_FN3,superfamily_FN_III-like
MED12	9968	genome.wustl.edu	37	X	70349668	70349668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.V1277A	1.000	18	0%	40	30%	7	0%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
OGT	8473	genome.wustl.edu	37	X	70779260	70779260	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181672.2	+1	reviewed	p.N582	1.000	135	0%	189	27.5%	4	0%	-	-	-	NULL
NHSL2	340527	genome.wustl.edu	37	X	71359562	71359562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013627.2	+1	provisional	p.P356A	1.000	67	0%	89	25.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NAP1L2	4674	genome.wustl.edu	37	X	72433613	72433613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021963.2	-1	reviewed	p.G239V	1.000	308	0%	308	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAP
CHIC1	53344	genome.wustl.edu	37	X	72804265	72804265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039840.2	+1	validated	p.E122*	1.000	31	0%	32	15.6%	1	0%	-	-	-	HMMPfam_Erf4
RLIM	51132	genome.wustl.edu	37	X	73812165	73812165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016120.3	-1	reviewed	p.R329C	1.000	124	0%	136	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATRX	546	genome.wustl.edu	37	X	76812925	76812925	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.P2232	0.999	309	0%	244	29.9%	5	80%	-	-	-	NULL
ATP7A	538	genome.wustl.edu	37	X	77284779	77284779	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.T983	0.340	402	0%	424	31.1%	1	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
SH3BGRL	6451	genome.wustl.edu	37	X	80532663	80532663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003022.2	+1	validated	p.R76C	1.000	127	0%	103	21.4%	5	0%	benign(0.034)	tolerated(1)	neutral(0.002)	HMMPfam_SH3BGR,superfamily_Thioredoxin-like
SH3BGRL	6451	genome.wustl.edu	37	X	80533858	80533858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003022.2	+1	validated	p.E87G	1.000	123	0%	118	41.5%	12	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_SH3BGR,superfamily_Thioredoxin-like
SATL1	340562	genome.wustl.edu	37	X	84349970	84349970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012980.2	-1	validated	p.L389I	0.622	20	0%	26	26.9%	0	-	possibly_damaging(0.951)	deleterious(0.02)	deleterious(0.777)	superfamily_Acyl_CoA_acyltransferase
ZNF711	7552	genome.wustl.edu	37	X	84526800	84526800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021998.4	+1	reviewed	p.H751P	1.000	232	0%	177	16.4%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KLHL4	56062	genome.wustl.edu	37	X	86924367	86924367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057162.2	+1	reviewed	p.Q712H	0.001	167	0%	180	19.4%	0	-	benign(0.038)	-	-	HMMSmart_SM00612
DIAPH2	1730	genome.wustl.edu	37	X	96013171	96013171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.E121K	1.000	74	0%	84	32.1%	0	-	unknown(0)	deleterious(0.05)	-	HMMPfam_Drf_GBD
PCDH19	57526	genome.wustl.edu	37	X	99551504	99551504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.S1026N	1.000	186	0.5%	195	24.6%	5	0%	benign(0.071)	tolerated(0.09)	neutral(0.301)	NULL
CENPI	2491	genome.wustl.edu	37	X	100381742	100381742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006733.2	+1	reviewed	p.F244L	0.762	529	0%	636	32.5%	1	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Mis6
TAF7L	54457	genome.wustl.edu	37	X	100531502	100531502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024885.3	-1	reviewed	p.R322W	0.718	222	0.9%	292	30.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARMCX2	9823	genome.wustl.edu	37	X	100911900	100911900	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014782.5	-1	reviewed	p.T225	0.000	99	0%	137	32.8%	19	0%	-	-	-	NULL
ARMCX2	9823	genome.wustl.edu	37	X	100912397	100912397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014782.5	-1	reviewed	p.G60R	0.939	121	0%	147	25.2%	16	0%	unknown(0)	deleterious(0)	-	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101912340	101912340	+	Missense_Mutation	SNP	C	C	T	rs181661823	by1000genomes	TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.R1167W	0.001	345	0%	473	27.9%	2	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_DUF634,superfamily_ARM-type_fold
NXF3	56000	genome.wustl.edu	37	X	102334367	102334367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022052.1	-1	reviewed	p.D419Y	0.952	173	0%	276	35.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NTF2,superfamily_NTF2-like
ENSG00000245920	0	genome.wustl.edu	37	X	102932165	102932165	+	RNA	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501276	+1	known	NULL	0.000	18	0.000	9	0.556	2	0%	-	-	-	-
IL1RAPL2	26280	genome.wustl.edu	37	X	105011511	105011511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017416.1	+1	reviewed	p.T640A	1.000	302	0%	257	37.7%	0	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	NULL
SERPINA7	6906	genome.wustl.edu	37	X	105278299	105278299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000354.5	-1	reviewed	p.G324D	0.997	193	0%	215	38.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
MUM1L1	139221	genome.wustl.edu	37	X	105450438	105450438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000337685	+1	known	p.R338I	0.016	63	0%	76	31.6%	0	-	benign(0.236)	tolerated(0.11)	neutral(0.295)	NULL
MUM1L1	139221	genome.wustl.edu	37	X	105450762	105450762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000337685	+1	known	p.F446C	0.999	164	0%	151	32.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF63748
TBC1D8B	54885	genome.wustl.edu	37	X	106046161	106046161	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017752.2	+1	validated	p.F26	1.000	76	0%	84	22.6%	0	-	-	-	-	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106065236	106065236	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017752.2	+1	validated	p.C130	1.000	253	0%	155	29.7%	0	-	-	-	-	NULL
PRPS1	5631	genome.wustl.edu	37	X	106871947	106871947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002764.3	+1	reviewed	p.V30A	1.000	39	0%	50	32%	11	0%	benign(0.001)	tolerated(1)	-	NULL
VSIG1	340547	genome.wustl.edu	37	X	107319371	107319371	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182607.4	+1	reviewed	p.I251	0.000	358	0%	371	30.5%	0	-	-	-	-	NULL
IRS4	8471	genome.wustl.edu	37	X	107976486	107976486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003604.2	-1	reviewed	p.A1030V	0.999	113	0%	120	20%	0	-	benign(0.029)	deleterious(0.02)	neutral(0.385)	NULL
GUCY2F	2986	genome.wustl.edu	37	X	108695265	108695265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001522.2	-1	reviewed	p.A487T	1.000	121	0%	109	23.9%	0	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
RGAG1	57529	genome.wustl.edu	37	X	109695735	109695735	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020769.2	+1	validated	p.E630	0.002	210	0%	414	31.9%	0	-	-	-	-	NULL
CHRDL1	91851	genome.wustl.edu	37	X	109924822	109924822	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143981.1	-1	reviewed	p.T348	0.007	234	0%	280	35.4%	1	0%	-	-	-	NULL
LOC203510	203510	genome.wustl.edu	37	X	111933609	111933609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001723892.1	+1	model	p.V156A	0.852	140	0%	138	29%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
SLC6A14	11254	genome.wustl.edu	37	X	115572201	115572201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007231.3	+1	reviewed	p.C94W	0.999	510	0.2%	391	16.6%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMPfam_SNF
ZCCHC12	170261	genome.wustl.edu	37	X	117960106	117960106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173798.2	+1	provisional	p.R300I	0.557	180	0%	287	33.4%	1	0%	benign(0.03)	tolerated(0.19)	neutral(0.051)	NULL
ATP1B4	23439	genome.wustl.edu	37	X	119504647	119504647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142447.2	+1	reviewed	p.L136M	1.000	394	0%	450	31.1%	0	-	probably_damaging(0.992)	tolerated(0.15)	deleterious(0.689)	HMMPfam_Na_K-ATPase
CT47B1	643311	genome.wustl.edu	37	X	120008941	120008941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145718.1	-1	validated	p.S195L	0.000	33	6.1%	71	47.9%	0	-	possibly_damaging(0.915)	tolerated(0.95)	neutral(0.366)	NULL
XIAP	331	genome.wustl.edu	37	X	123019576	123019576	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001167.2	+1	reviewed	p.E22*	1.000	108	0%	112	25%	1	0%	-	-	-	superfamily_SSF57924
STAG2	10735	genome.wustl.edu	37	X	123176469	123176469	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.R146*	1.000	89	0%	92	32.6%	22	0%	-	-	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123215311	123215311	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.R953*	1.000	194	0%	193	28.5%	5	0%	-	-	-	superfamily_ARM-type_fold
ODZ1	10178	genome.wustl.edu	37	X	123775791	123775791	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.E643*	1.000	466	0%	426	28.4%	0	-	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
ODZ1	10178	genome.wustl.edu	37	X	124028186	124028186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.P165H	0.999	209	0%	202	27.2%	0	-	possibly_damaging(0.918)	tolerated(0.06)	deleterious(0.691)	HMMPfam_Ten_N
ODZ1	10178	genome.wustl.edu	37	X	124097522	124097522	+	Silent	SNP	A	A	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.S27	0.014	591	0%	661	30.7%	0	-	-	-	-	HMMPfam_Ten_N
DCAF12L2	340578	genome.wustl.edu	37	X	125298631	125298631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013628.2	-1	reviewed	p.E426A	0.555	112	0%	58	29.3%	0	-	benign(0.277)	tolerated(0.52)	neutral(0.038)	NULL
DCAF12L1	139170	genome.wustl.edu	37	X	125686023	125686023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178470.4	-1	reviewed	p.R190H	0.015	21	0%	39	35.9%	0	-	probably_damaging(0.988)	tolerated(0.18)	deleterious(0.493)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
DCAF12L1	139170	genome.wustl.edu	37	X	125686436	125686436	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178470.4	-1	reviewed	p.A52	0.200	11	0%	30	20%	0	-	-	-	-	NULL
SMARCA1	6594	genome.wustl.edu	37	X	128649940	128649940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.D154Y	1.000	228	0%	258	24.8%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZDHHC9	51114	genome.wustl.edu	37	X	128948662	128948662	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008222.2	-1	reviewed	p.F199	1.000	310	0%	448	29.9%	17	0%	-	-	-	NULL
BCORL1	63035	genome.wustl.edu	37	X	129148542	129148542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.F598L	0.996	44	0%	89	32.6%	1	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
RAB33A	9363	genome.wustl.edu	37	X	129318675	129318675	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004794.2	+1	reviewed	p.F225	1.000	74	0%	109	25.7%	2	0%	-	-	-	superfamily_SSF52540
FAM122B	159090	genome.wustl.edu	37	X	133915875	133915875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145284.5	-1	validated	p.A193V	0.025	129	0%	158	27.8%	6	100%	benign(0.252)	tolerated(0.24)	neutral(0.064)	NULL
FAM122B	159090	genome.wustl.edu	37	X	133921558	133921558	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145284.5	-1	validated	p.F128	1.000	101	0%	113	29.2%	7	0%	-	-	-	NULL
DDX26B	203522	genome.wustl.edu	37	X	134714084	134714084	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182540.4	+1	validated	p.R794*	0.974	99	0%	141	33.3%	0	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135429713	135429713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.S1283Y	0.000	699	0%	597	32.3%	0	-	possibly_damaging(0.911)	deleterious(0.03)	deleterious(0.728)	NULL
GPR112	139378	genome.wustl.edu	37	X	135445719	135445719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.K2454T	1.000	238	0%	233	30%	0	-	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	NULL
BRS3	680	genome.wustl.edu	37	X	135570441	135570441	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001727.1	+1	validated	p.V56	1.000	160	0%	130	33.8%	0	-	-	-	-	superfamily_SSF81321
HTATSF1	27336	genome.wustl.edu	37	X	135593363	135593363	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014500.4	+1	reviewed	p.E487*	0.028	303	0%	249	35.7%	45	0%	-	-	-	NULL
VGLL1	51442	genome.wustl.edu	37	X	135630910	135630910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016267.3	+1	reviewed	p.R126Q	0.003	284	0.4%	359	24.5%	3	0%	benign(0.14)	tolerated(0.58)	neutral(0.017)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138844260	138844260	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.K837Q	1.000	401	0.2%	375	27.2%	0	-	probably_damaging(0.956)	deleterious(0.04)	deleterious(0.748)	superfamily_HAD-like
ATP11C	286410	genome.wustl.edu	37	X	138870439	138870439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.D481N	0.994	194	0%	200	30%	1	0%	benign(0.017)	tolerated(0.39)	neutral(0.017)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
PASD1	139135	genome.wustl.edu	37	X	150817104	150817104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173493.2	+1	reviewed	p.R216K	0.000	312	0%	297	28.6%	0	-	probably_damaging(0.984)	-	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150828229	150828229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173493.2	+1	reviewed	p.E254D	0.000	252	0%	229	14%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
PNMA5	114824	genome.wustl.edu	37	X	152159591	152159591	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103150.1	-1	validated	p.E184	0.091	37	0%	89	38.2%	0	-	-	-	-	NULL
SSR4	6748	genome.wustl.edu	37	X	153061980	153061980	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006280.1	+1	reviewed	p.I53	0.997	6	0.000	34	0.265	798	0%	-	-	-	HMMPfam_TRAP-delta
ARHGAP4	393	genome.wustl.edu	37	X	153184500	153184500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GP-01	TCGA-A5-A0GP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001666.4	-1	reviewed	p.D273A	0.998	35	0%	63	28.6%	6	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
