Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27106168	27106169	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.K1928fs	0.008:0.672	-	-	-	-	-	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27107105	27107105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.L2239P	0.998	57	0%	47	29.8%	42	42.8%	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	NULL
BCL9	607	genome.wustl.edu	37	1	147096117	147096117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.S1213L	1.000	44	2.3%	43	25.6%	12	58.3%	possibly_damaging(0.918)	tolerated(0.06)	deleterious(0.691)	NULL
ARHGEF11	9826	genome.wustl.edu	37	1	156949025	156949025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198236.1	-1	reviewed	p.I109M	1.000	326	0%	318	19.8%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PKP1	5317	genome.wustl.edu	37	1	201288983	201288983	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000299.2	+1	reviewed	p.P424	0.000	78	0%	90	30%	0	-	-	-	-	superfamily_ARM repeat
GALNT14	79623	genome.wustl.edu	37	2	31133839	31133839	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024572.2	-1	validated	p.N529	0.002	248	0.4%	207	26.1%	45	17.7%	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
XIRP2	129446	genome.wustl.edu	37	2	168103963	168103963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.A2021S	0.987	102	0%	60	25%	0	-	possibly_damaging(0.737)	deleterious(0)	deleterious(0.714)	NULL
TTN	7273	genome.wustl.edu	37	2	179393347	179393347	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.Q33141*	1.000	291	0%	214	17.3%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179478885	179478885	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.T13845	1.000	490	0%	528	21.2%	11	45.4%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
CCDC150	284992	genome.wustl.edu	37	2	197530399	197530399	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080539.1	+1	provisional	p.R252*	1.000	218	0%	185	18.9%	0	-	-	-	-	NULL
ALS2	57679	genome.wustl.edu	37	2	202572613	202572613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020919.3	-1	reviewed	p.R1461Q	1.000	240	0.8%	239	22.2%	4	75%	possibly_damaging(0.792)	tolerated(0.56)	neutral(0.303)	superfamily_VPS9 domain (Pfam 02204)
MFF	56947	genome.wustl.edu	37	2	228221828	228221828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020194.4	+1	provisional	p.R342C	1.000	421	0%	409	13%	142	51.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF800
NUP210	23225	genome.wustl.edu	37	3	13377058	13377058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024923.2	-1	reviewed	p.V1247I	0.269	119	0%	118	23.7%	7	42.8%	benign(0.111)	tolerated(0.19)	neutral(0.058)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126736462	126736462	+	Silent	SNP	C	C	G	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.P1134	0.998	105	0%	88	25%	2	50%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
ANTXR2	118429	genome.wustl.edu	37	4	80898779	80898779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145794.1	-1	reviewed	p.D475V	1.000	326	0%	286	21.3%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ant_C
SKIV2L2	23517	genome.wustl.edu	37	5	54635988	54635988	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015360.4	+1	validated	p.A222	1.000	430	0%	423	22.9%	2	50%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
MAP3K1	4214	genome.wustl.edu	37	5	56161690	56161690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005921.1	+1	validated	p.R396H	1.000	363	0%	288	14.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156817650	156817650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037332.2	+1	validated	p.G1190W	1.000	218	0%	215	19.5%	10	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_FragX_IP
SYNGAP1	8831	genome.wustl.edu	37	6	33399956	33399956	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006772.2	+1	reviewed	p.S105fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00233
DSE	29940	genome.wustl.edu	37	6	116757323	116757323	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080976.1	+1	reviewed	p.Q564	1.000	194	0%	145	19.3%	2	0%	-	-	-	NULL
ESR1	2099	genome.wustl.edu	37	6	152382152	152382154	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000125.3	+1	reviewed	p.V422in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
NPSR1	387129	genome.wustl.edu	37	7	34724220	34724220	+	Silent	SNP	C	C	G	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207173.1	+1	reviewed	p.S68	0.000	580	0%	639	19.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HIP1	3092	genome.wustl.edu	37	7	75189186	75189186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005338.4	-1	reviewed	p.V409I	0.001	15	0%	21	23.8%	3	0%	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98609014	98609014	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456197	+1	known	p.R3446Q	0.001	137	0%	120	14.2%	27	40.7%	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
CNTNAP2	26047	genome.wustl.edu	37	7	147844678	147844678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.R884W	1.000	159	0%	136	24.3%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EZH2	2146	genome.wustl.edu	37	7	148514368	148514368	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004456.3	-1	reviewed	p.Y452*	1.000	317	0%	304	25%	4	75%	-	-	-	HMMSmart_SANT
SSPO	23145	genome.wustl.edu	37	7	149477454	149477454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.R509*	0.000	60	0%	58	25.9%	0	-	-	-	-	superfamily_Serine proterase inhibitors,HMMPfam_TIL
CSMD1	64478	genome.wustl.edu	37	8	3265577	3265577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.A640T	0.073	232	0%	185	26.5%	0	-	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
HR	55806	genome.wustl.edu	37	8	21979148	21979148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005144.4	-1	reviewed	p.H727Q	0.934	443	0.5%	483	23.6%	1	0%	benign(0.017)	tolerated(0.19)	neutral(0.050)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139190825	139190825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.H328N	0.998	206	0%	209	18.2%	0	-	benign(0.247)	tolerated(0.34)	neutral(0.048)	NULL
PCBD1	5092	genome.wustl.edu	37	10	72643772	72643772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000281.2	-1	reviewed	p.G84S	1.000	178	0%	157	42.7%	266	92.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pterin_4a,superfamily_Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
PTEN	5728	genome.wustl.edu	37	10	89717626	89717626	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.C218fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
FGFR2	2263	genome.wustl.edu	37	10	123279677	123279677	+	Missense_Mutation	SNP	G	G	C	rs79184941	byCluster	TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.S252W	1.000	117	0%	107	23.4%	5	60%	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	NULL
STK32C	282974	genome.wustl.edu	37	10	134036465	134036465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173575.2	-1	reviewed	p.R340Q	0.998	41	0%	47	12.8%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MUC5B	727897	genome.wustl.edu	37	11	1268804	1268804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T3568M	0.001	295	0.3%	287	13.6%	20	40%	unknown(0)	-	-	NULL
OR4A16	81327	genome.wustl.edu	37	11	55111246	55111246	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005274.1	+1	provisional	p.T190	0.718	589	0%	462	17.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PGR	5241	genome.wustl.edu	37	11	100933192	100933192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000926.4	-1	reviewed	p.S733Y	1.000	262	0%	254	16.9%	15	6.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
DYNC2H1	79659	genome.wustl.edu	37	11	102980397	102980397	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.L32	0.000	129	0%	152	19.7%	0	-	-	-	-	NULL
OR8D2	283160	genome.wustl.edu	37	11	124189683	124189683	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002918.1	-1	provisional	p.S137	0.001	177	0%	128	18.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TAS2R13	50838	genome.wustl.edu	37	12	11061487	11061487	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023920.2	-1	reviewed	p.T137	0.000	198	0%	143	25.2%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
CSAD	51380	genome.wustl.edu	37	12	53553926	53553926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015989.4	-1	validated	p.D409N	0.897	65	1.5%	98	28.6%	33	42.4%	benign(0.015)	tolerated(0.64)	neutral(0.004)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
ARHGAP9	64333	genome.wustl.edu	37	12	57872934	57872934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032496.2	-1	reviewed	p.E86K	0.976	260	0%	227	25.6%	0	-	possibly_damaging(0.649)	tolerated(0.1)	deleterious(0.514)	HMMSmart_SH3,superfamily_SH3
KCTD10	83892	genome.wustl.edu	37	12	109889536	109889536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031954.3	-1	provisional	p.N269S	1.000	50	0%	42	21.4%	9	0%	benign(0.085)	tolerated(0.88)	neutral(0.006)	NULL
SDSL	113675	genome.wustl.edu	37	12	113871964	113871964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138432.2	+1	provisional	p.A127V	1.000	147	0%	173	22%	21	42.8%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
OR4M1	441670	genome.wustl.edu	37	14	20249106	20249106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005500.1	+1	provisional	p.V209L	0.908	741	0.1%	769	19.9%	0	-	benign(0.002)	tolerated(0.83)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BDKRB2	624	genome.wustl.edu	37	14	96707048	96707048	+	Missense_Mutation	SNP	C	C	T	rs183386880	by1000genomes	TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000623.3	+1	reviewed	p.T128M	0.000	78	1.3%	74	27%	1	0%	benign(0.253)	tolerated(0.14)	neutral(0.276)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC30A4	7782	genome.wustl.edu	37	15	45777386	45777386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013309.4	-1	validated	p.A422G	0.616	349	0%	352	19%	1	0%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
ABAT	18	genome.wustl.edu	37	16	8858686	8858686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000663.4	+1	reviewed	p.R180Q	1.000	85	0%	86	22.1%	1	0%	possibly_damaging(0.621)	tolerated(0.41)	neutral(0.231)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
E2F4	1874	genome.wustl.edu	37	16	67231931	67231931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001950.3	+1	reviewed	p.L383V	1.000	240	0%	257	18.7%	63	38%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MARVELD3	91862	genome.wustl.edu	37	16	71668441	71668441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052858.3	+1	validated	p.A314V	0.128	153	0%	144	22.9%	4	25%	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	HMMPfam_MARVEL
ANKFN1	162282	genome.wustl.edu	37	17	54403675	54403675	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153228.2	+1	validated	p.L52	1.000	301	0%	278	23%	0	-	-	-	-	NULL
CCDC47	57003	genome.wustl.edu	37	17	61843400	61843400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020198.2	-1	validated	p.M46V	0.004	272	0.4%	261	19.5%	11	36.3%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66881445	66881445	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007168.2	-1	reviewed	p.F1107	0.001	203	0%	156	17.3%	0	-	-	-	-	NULL
CTIF	9811	genome.wustl.edu	37	18	46146000	46146000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142397.1	+1	validated	p.E22K	1.000	41	0%	36	11.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GNA11	2767	genome.wustl.edu	37	19	3113330	3113330	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002067.2	+1	validated	p.A108	1.000	41	0%	42	16.7%	7	42.8%	-	-	-	HMMPfam_G-alpha,superfamily_Transducn_insert,superfamily_SSF52540
CAMSAP3	57662	genome.wustl.edu	37	19	7682714	7682714	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080429.2	+1	validated	p.T1201fs	0.990	-	-	-	-	-	-	-	-	-	superfamily_PRC-barrel domain,HMMPfam_DUF1781
FBN3	84467	genome.wustl.edu	37	19	8161815	8161815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032447.3	-1	reviewed	p.R1788L	1.000	77	1.3%	92	18.5%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
MUC16	94025	genome.wustl.edu	37	19	9073176	9073176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.P4757L	0.003	184	0%	148	20.3%	3	66.6%	unknown(0)	-	-	NULL
CYP4F2	8529	genome.wustl.edu	37	19	15989736	15989736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082.3	-1	reviewed	p.G470R	1.000	87	0%	87	16.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450
SLC5A5	6528	genome.wustl.edu	37	19	18001755	18001755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000453.2	+1	reviewed	p.T571I	0.219	113	0%	157	23.6%	1	100%	possibly_damaging(0.923)	deleterious(0.02)	deleterious(0.756)	NULL
IL12RB1	3594	genome.wustl.edu	37	19	18174729	18174729	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005535.1	-1	reviewed	p.A525	0.000	32	0%	47	17%	2	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ZNF606	80095	genome.wustl.edu	37	19	58490830	58490830	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025027.3	-1	validated	p.G406	0.002	242	0%	188	20.2%	4	0%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PROKR2	128674	genome.wustl.edu	37	20	5294673	5294673	+	Missense_Mutation	SNP	C	C	T	rs138672528	by1000genomes	TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144773.2	-1	reviewed	p.V115M	1.000	201	0%	176	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
ITSN1	6453	genome.wustl.edu	37	21	35144400	35144400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003024.2	+1	reviewed	p.R360C	0.996	287	0.3%	250	18.4%	1	0%	unknown(0)	deleterious(0)	-	NULL
DGCR8	54487	genome.wustl.edu	37	22	20079118	20079118	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022720.5	+1	validated	p.L489	1.000	174	0%	125	21.6%	7	28.5%	-	-	-	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26706651	26706651	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021115.4	+1	validated	p.S510	0.407	101	0%	91	19.8%	0	-	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZC3H7B	23264	genome.wustl.edu	37	22	41752792	41752792	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017590.4	+1	reviewed	p.G887	1.000	23	0%	29	20.7%	7	0%	-	-	-	HMMPfam_zf-CCCH,superfamily_SSF90229
SERHL2	253190	genome.wustl.edu	37	22	42950994	42950994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014509.3	+1	provisional	p.K25E	1.000	81	0%	108	13.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_alpha/beta-Hydrolases
TRO	7216	genome.wustl.edu	37	X	54950037	54950037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039705.1	+1	reviewed	p.P358S	0.001	79	0%	79	20.3%	3	0%	benign(0.071)	tolerated(0.42)	neutral(0.019)	NULL
CYLC1	1538	genome.wustl.edu	37	X	83128725	83128725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021118.1	+1	provisional	p.S337T	0.910	207	0%	132	19.7%	0	-	unknown(0)	tolerated(0.25)	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135430967	135430967	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.S1701*	0.020	250	0%	228	23.7%	0	-	-	-	-	NULL
FGF13	2258	genome.wustl.edu	37	X	137715055	137715055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GQ-01	TCGA-A5-A0GQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139500.1	-1	reviewed	p.V242M	0.921	265	0%	309	19.4%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
